Rorug03G0144700

Glycine-rich RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0015367
Physical Location & Seq
Reverse (-)
11874570 .. 11877805
3236 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0144700.1

Sequence Viewer

Length: 2442 bp
ATGAGTCTGGGAAGTGGTACTACTGGCCGGACATGTATGTTGTGGCGTGTAAGGCTACGCTCAGCCTTCCGTACCATCTTAGCCTGCACCGTAATCTACCTCACCACCCTCTGTGCCCCGGAAACTCTCAAACAACTAGTAGCACACCCAGCCTATTCTTACCTGACAACAATCTTAATAGTCTCAGCAGACGCAACTCTCGGTGATGCCTTGAAAGGCTTCTGGCATGCCCTGTATGCTTGTGTTCAGGTTCTAAGTCTCTCAATTTTGAGCCTCCAGCTGATTGGGCCTGCGCTCTTCACCTCCCATGTGATTGCAGCCTTGGCAGTGGCTGTCTCTGCGTTTGTTGTGGCATTGCCAGAAGTAACAAACTTGATGTGTAAGCGGATTGCGTTTGGGCAGATTGTGATAGTCTATGTAGGCACTGCTATTCATAGTAGTACTGCACAGGCTGATCATGATCAGGATGATATGGTACTCATGCACCCAATTCAAGTGGCTTCAAGTACTATGCTCGGAGCATTGGCATCTGTTCTGGCTATGTTGTTTCCGAACCTGGTCTTCTATCATGAATATTCTTTTCTGGCTATGTTGTCTCCCCACCTTGGCTATCACCAGGTAGGACAAATGTGCCGAAAATATACTGACAATGCCAGGAAAAGGTTGAGCCTTTACTTAGAAGCTGTGGTGTCTCAAGAGAGCTTGGCTGCCCTTGACACTATTTCAGAAGCACAGCACTTGACTATAGTAGGAGAAAAGCTTCTTCACAGTATCAAACAGAAACAGGAAGCCTTGGTGTGGGAGAGACCAGAGATCAGAATCCTAAAACCAAGTTGCATTGATTTGGAAAAGAAATTGCAGGATATAGAAGTACCCTTAAGAGGAATGGAAGTAGCTCTAACTTGTTGCCCTTCATTTCCTGTTGCCATGATTGACAAAGTGCCCAAAGATGCTTTCACCAACATAAAGAGTCGCATAATCCACAAGCTGGAGCAACTTGAGCGCATTTCACCTTTCTACATGACAAAGAATAAGGGAAATTCCCTAGACTGGTCCTTTTGGACCCTCGAAACCCTTTGTCATGAAGATTTGTCGGCTTTCTTTTTTCTTGATTGTCTGAAACTCCTCCAAGAAAATACTGAGGCTATTGAAGAATGCAAGAAGGACACTGAGATAAAAAGTTTCAGTGGTTCACAAAATCAAAGCAATAGCAGTATCATAAGGTGCCGGAGCACTCTAGAGCACATGATACCAAGCAAAGCAAGTTTACTTTTTGCATTCAAGTGCTCGCTTTCTCTAGGTCTTGCTGTGCTATTTGGTTTGATTTATAATGAAAAAGAAGCGTATTGGGCAGGACTCACAATTGCAATAAGTTTTGTCACCGGAAGACAAGCGACATTTACACTTGCCAATGCTCGAGCACAATCAACAGCAATGGGATCAATCTATGGAATCTTGTGCTGTTTTGTTTTCCAAAAATTTGAGGATATAAGCTTCTTACCTCTTATTCCTTGGTTAATATTCACAAGTTTTCTAAGGCACAGCAGGATGTATGGTCAAGCTGGTGGGATATCAGCAGCTGTTGGGGCATTACTAATACTTGGTAGGAAAAATTATGGCCCTCCTATCGATTTTGCAATTGCTAGGATCACAGAGGCTGTAATTGGATTGATCTGTTTCTTCACCATAGAGATTCTCTCATGTCAATTAAGAGCAGCACCTCTAGTAAAACTTGAACTTTCACATTGCTTGGGAGCTCTTCAAGAATGTATCAAAGATATAGTTCTCTTTGACAATAACCAAAGCAACCTGCAAGCTTCAATCCTTCCAGCACTGAAACAGAAACAGGACAATTTGAAGTCCCATCTCGATCAATTTGAGAAGTTTGTTGTTGAAGCTGAGTTGGAGCCTAATTTCTGGTTCATCCCTTTCAACAGCGCTTGTTATCGTAAGCTCCTGAGGTCTGTATTAAAGATGGCTGACCTTTCACTTTTTATGTCCAACAAAGTACAATCTCTATCACTGGCATTAAAAAGATTTGAAGTTGCTGCAGAGTACCTCCAAAGCCACATCAAGGGCATGAAGAATGATCTAGATCTTTTCAAGAATATAGTCTGCTCCTCACTTCAATGCCTTCAAGAGTTGTCTTCCAAGAAGTCCCTTGCAGTACATGACAAACATGACATGGAGTTGGGAGCATTACATGAGGAAGATGATGAGTGTTCCATTTTAAGTTCTTTTCTTCAACATTCCAACTATGTATCGGATGGAATTGATACCGGTGAAGGCGAGAAAGATGAGAAGCTTAAGAGCCAGGTGGTTCTGTGTTTGGGTGGCCTAGGATTCTGCATCACTAGTCTGCTGAGGGAAGTACTAGAGATGGAGAAAGAGTTTCAAGAACTAGCCAAATGGGAGAACCCTTCAAGCCATGTTGTAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006417 GO:0006950 GO:0006996 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010494 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0016043 GO:0017148 GO:0019219 GO:0019222 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031330 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032270 GO:0032991 GO:0034063 GO:0034248 GO:0034249 GO:0034250 GO:0034622 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043487 GO:0043488 GO:0043489 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045182 GO:0045727 GO:0045934 GO:0047484 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065003 GO:0065007 GO:0065008 GO:0070013 GO:0070181 GO:0070925 GO:0071826 GO:0071840 GO:0080090 GO:0080134 GO:0097159 GO:1901000 GO:1901002 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312 GO:1990904 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

813

Amino Acids

90.59

Weight (kDa)

6.31

Isoelectric Point (pI)

46.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FUSC_2 PF13515 435 - 561 6.6e-11 Fusaric acid resistance protein-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015367)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06210
fragaria_vesca FvH4_6g19520 FvH4_6g19520
malus_domestica MD14G1031800.v1.1
prunus_persica Prupe.7G101000_v2.0.a1
pyrus_communis pycom14g02870
rosa_chinensis RchiOBHm_Chr3g0474861
rosa_laevigata RLG00000023889
rosa_multiflora Rmu_sc0011900.1_g000004
rosa_roxburghii Rroxscaffold_6G00406790
rosa_rugosa Rorug03G0144700
rosa_samantha Rh3AG194200 Rh3BG224100 Rh3CG219000 Rh3DG220000
rosa_wichuraiana Rw3G017690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1329
Acc36I ACCTGC 1 cut(s) 1818
AccB1I GGYRCC 1 cut(s) 1224
AccB7I CCANNNNNTGG 1 cut(s) 988
AciI CCGC 1 cut(s) 385
AclWI GGATC 2 cut(s) 1447, 1655
AcoI YGGCCR 1 cut(s) 25
AcsI RAATTY 2 cut(s) 1039, 1478
AfeI AGCGCT 1 cut(s) 1939
AfiI CCNNNNNNNGG 7 cut(s) 605, 660, 798, 881, 988, 1050, 2074
AflII CTTAAG 2 cut(s) 877, 2306
AflIII ACRYGT 1 cut(s) 32
AgeI ACCGGT 1 cut(s) 2279
AhlI ACTAGT 2 cut(s) 136, 2354
AjnI CCWGG 4 cut(s) 555, 615, 653, 2313
AjuI GAANNNNNNNTTGG 2 cut(s) 938, 970
Alw21I GWGCWC 5 cut(s) 1235, 1245, 1289, 1423, 1759
Alw26I GTCTC 6 cut(s) 187, 263, 340, 600, 696, 799
AlwI GGATC 2 cut(s) 1447, 1655
AlwNI CAGNNNCTG 3 cut(s) 332, 1580, 1658
Ama87I CYCGRG 1 cut(s) 1416
Aor51HI AGCGCT 1 cut(s) 1939
AoxI GGCC 4 cut(s) 25, 287, 1618, 2335
ApeKI GCWGC 5 cut(s) 317, 707, 1577, 1715, 2048
ApoI RAATTY 2 cut(s) 1039, 1478
AsiGI ACCGGT 1 cut(s) 2279
Asp700I GAANNNNTTC 2 cut(s) 218, 759
AspA2I CCTAGG 1 cut(s) 2338
AspLEI GCGC 3 cut(s) 295, 1005, 1940
AspS9I GGNCC 4 cut(s) 287, 1053, 1062, 1619
AsuC2I CCSGG 1 cut(s) 119
AsuHPI GGTGA 9 cut(s) 94, 215, 292, 605, 949, 1002, 1372, 1675, 2294
AvaI CYCGRG 1 cut(s) 1416
AvaII GGWCC 2 cut(s) 1053, 1062
AvrII CCTAGG 1 cut(s) 2338
AxyI CCTNAGG 1 cut(s) 1958
BaeGI GKGCMC 2 cut(s) 118, 945
BanI GGYRCC 1 cut(s) 1224
BanII GRGCYC 1 cut(s) 1759
BarI GAAGNNNNNNTAC 1 cut(s) 36
BbsI GAAGAC 3 cut(s) 553, 1393, 2139
Bbv12I GWGCWC 5 cut(s) 1235, 1245, 1289, 1423, 1759
BbvCI CCTCAGC 1 cut(s) 2363
BbvI GCAGC 5 cut(s) 329, 694, 1589, 1727, 2035
BccI CCATC 5 cut(s) 83, 1872, 1969, 2261, 2374
BciT130I CCWGG 4 cut(s) 557, 617, 655, 2315
BclI TGATCA 2 cut(s) 454, 460
BcnI CCSGG 1 cut(s) 119
BcoDI GTCTC 6 cut(s) 187, 263, 340, 600, 696, 799
BcuI ACTAGT 2 cut(s) 136, 2354
BfmI CTRYAG 2 cut(s) 744, 2049
BfoI RGCGCY 1 cut(s) 1941
BfrI CTTAAG 2 cut(s) 877, 2306
BfuAI ACCTGC 1 cut(s) 1818
BglII AGATCT 1 cut(s) 2095
BisI GCNGC 5 cut(s) 318, 708, 1578, 1716, 2049
BlnI CCTAGG 1 cut(s) 2338
BlpI GCTNAGC 1 cut(s) 61
BlsI GCNGC 5 cut(s) 319, 709, 1579, 1717, 2050
BmcAI AGTACT 3 cut(s) 442, 508, 2373
Bme1390I CCNGG 5 cut(s) 119, 557, 617, 655, 2315
Bme18I GGWCC 2 cut(s) 1053, 1062
BmeT110I CYCGRG 1 cut(s) 1416
BmgT120I GGNCC 4 cut(s) 287, 1053, 1062, 1619
BmiI GGNNCC 3 cut(s) 1064, 1226, 1908
BmrFI CCNGG 5 cut(s) 119, 557, 617, 655, 2315
BmsI GCATC 4 cut(s) 196, 536, 940, 2358
BpiI GAAGAC 3 cut(s) 553, 1393, 2139
BplI GAGNNNNNCTC 2 cut(s) 1682, 1714
BpmI CTGGAG 2 cut(s) 260, 1010
Bpu10I CCTNAGC 1 cut(s) 2363
Bpu1102I GCTNAGC 1 cut(s) 61
BpuEI CTTGAG 2 cut(s) 678, 1019
BpuMI CCSGG 1 cut(s) 119
Bsa29I ATCGAT 1 cut(s) 1629
BsaBI GATNNNNATC 3 cut(s) 459, 818, 2094
BsaI GGTCTC 1 cut(s) 799
BsaJI CCNNGG 6 cut(s) 117, 321, 604, 792, 1511, 2338
BsaWI WCCGGW 2 cut(s) 1382, 2279
BsaXI ACNNNNNCTCC 2 cut(s) 2375, 2405
Bsc4I CCNNNNNNNGG 7 cut(s) 605, 660, 798, 881, 988, 1050, 2074
Bse118I RCCGGY 1 cut(s) 2279
Bse1I ACTGG 3 cut(s) 28, 1055, 2028
Bse21I CCTNAGG 1 cut(s) 1958
Bse3DI GCAATG 3 cut(s) 353, 1440, 1744
Bse8I GATNNNNATC 3 cut(s) 459, 818, 2094
BseBI CCWGG 4 cut(s) 557, 617, 655, 2315
BseCI ATCGAT 1 cut(s) 1629
BseDI CCNNGG 6 cut(s) 117, 321, 604, 792, 1511, 2338
BseGI GGATG 4 cut(s) 472, 1554, 1923, 2272
BseJI GATNNNNATC 3 cut(s) 459, 818, 2094
BseLI CCNNNNNNNGG 7 cut(s) 605, 660, 798, 881, 988, 1050, 2074
BseMI GCAATG 3 cut(s) 353, 1440, 1744
BseMII CTCAG 7 cut(s) 75, 198, 1131, 1161, 1890, 1949, 2354
BseNI ACTGG 3 cut(s) 28, 1055, 2028
BseRI GAGGAG 2 cut(s) 1115, 2110
BseSI GKGCMC 2 cut(s) 118, 945
BseXI GCAGC 5 cut(s) 329, 694, 1589, 1727, 2035
BseYI CCCAGC 1 cut(s) 148
BsgI GTGCAG 2 cut(s) 70, 429
BshFI GGCC 4 cut(s) 27, 289, 1620, 2337
BshNI GGYRCC 1 cut(s) 1224
BshTI ACCGGT 1 cut(s) 2279
BshVI ATCGAT 1 cut(s) 1629
BsiHKAI GWGCWC 5 cut(s) 1235, 1245, 1289, 1423, 1759
BsiHKCI CYCGRG 1 cut(s) 1416
BsiSI CCGG 5 cut(s) 28, 119, 1228, 1383, 2280
BslFI GGGAC 2 cut(s) 1846, 2143
BslI CCNNNNNNNGG 7 cut(s) 605, 660, 798, 881, 988, 1050, 2074
BsmAI GTCTC 6 cut(s) 187, 263, 340, 600, 696, 799
BsmFI GGGAC 2 cut(s) 1846, 2143
BsmI GAATGC 2 cut(s) 1160, 1277
BsnI GGCC 4 cut(s) 27, 289, 1620, 2337
Bso31I GGTCTC 1 cut(s) 799
BsoBI CYCGRG 1 cut(s) 1416
Bsp1286I GDGCHC 7 cut(s) 118, 945, 1235, 1245, 1289, 1423, 1759
Bsp143I GATC 9 cut(s) 454, 460, 813, 1439, 1647, 1671, 1870, 2089, 2095
Bsp1720I GCTNAGC 1 cut(s) 61
BspACI CCGC 1 cut(s) 385
BspANI GGCC 4 cut(s) 27, 289, 1620, 2337
BspCNI CTCAG 7 cut(s) 74, 197, 1132, 1162, 1891, 1950, 2355
BspDI ATCGAT 1 cut(s) 1629
BspHI TCATGA 3 cut(s) 457, 568, 1081
BspLI GGNNCC 3 cut(s) 1064, 1226, 1908
BspMAI CTGCAG 1 cut(s) 2053
BspMI ACCTGC 1 cut(s) 1818
BspPI GGATC 2 cut(s) 1447, 1655
BspQI GCTCTTC 2 cut(s) 302, 1764
BspT107I GGYRCC 1 cut(s) 1224
BspTI CTTAAG 2 cut(s) 877, 2306
BspTNI GGTCTC 1 cut(s) 799
BsrDI GCAATG 3 cut(s) 353, 1440, 1744
BsrFI RCCGGY 1 cut(s) 2279
BsrI ACTGG 3 cut(s) 28, 1055, 2028
BssAI RCCGGY 1 cut(s) 2279
BssECI CCNNGG 6 cut(s) 117, 321, 604, 792, 1511, 2338
BssMI GATC 9 cut(s) 454, 460, 813, 1439, 1647, 1671, 1870, 2089, 2095
BssT1I CCWWGG 5 cut(s) 321, 604, 792, 1511, 2338
Bst2UI CCWGG 4 cut(s) 557, 617, 655, 2315
Bst4CI ACNGT 2 cut(s) 91, 770
Bst6I CTCTTC 2 cut(s) 302, 1764
BstAFI CTTAAG 2 cut(s) 877, 2306
BstC8I GCNNGC 5 cut(s) 85, 228, 291, 1289, 1815
BstF5I GGATG 4 cut(s) 472, 1554, 1923, 2272
BstH2I RGCGCY 1 cut(s) 1941
BstHHI GCGC 3 cut(s) 295, 1005, 1940
BstKTI GATC 9 cut(s) 457, 463, 816, 1442, 1650, 1674, 1873, 2092, 2098
BstMAI GTCTC 6 cut(s) 187, 263, 340, 600, 696, 799
BstMBI GATC 9 cut(s) 454, 460, 813, 1439, 1647, 1671, 1870, 2089, 2095
BstMWI GCNNNNNNNGC 9 cut(s) 52, 149, 236, 286, 323, 338, 1000, 1349, 1586
BstNI CCWGG 4 cut(s) 557, 617, 655, 2315
BstNSI RCATGY 2 cut(s) 36, 230
BstSCI CCNGG 5 cut(s) 117, 555, 615, 653, 2313
BstSFI CTRYAG 2 cut(s) 744, 2049
BstSLI GKGCMC 2 cut(s) 118, 945
BstV1I GCAGC 5 cut(s) 329, 694, 1589, 1727, 2035
BstV2I GAAGAC 3 cut(s) 553, 1393, 2139
BstX2I RGATCY 1 cut(s) 2095
BstXI CCANNNNNNTGG 1 cut(s) 284
BstYI RGATCY 1 cut(s) 2095
Bsu15I ATCGAT 1 cut(s) 1629
Bsu36I CCTNAGG 1 cut(s) 1958
BsuRI GGCC 4 cut(s) 27, 289, 1620, 2337
BsuTUI ATCGAT 1 cut(s) 1629
BtsCI GGATG 4 cut(s) 472, 1554, 1923, 2272
BtsI GCAGTG 2 cut(s) 333, 423
BtsIMutI CAGTG 6 cut(s) 333, 423, 1167, 1192, 1832, 2021
BveI ACCTGC 1 cut(s) 1818
Cac8I GCNNGC 5 cut(s) 85, 228, 291, 1289, 1815
CaiI CAGNNNCTG 3 cut(s) 332, 1580, 1658
CciI TCATGA 3 cut(s) 457, 568, 1081
CfoI GCGC 3 cut(s) 295, 1005, 1940
Cfr10I RCCGGY 1 cut(s) 2279
Cfr13I GGNCC 4 cut(s) 287, 1053, 1062, 1619
ClaI ATCGAT 1 cut(s) 1629
CseI GACGC 1 cut(s) 200
CsiI ACCWGGT 2 cut(s) 555, 615
CspAI ACCGGT 1 cut(s) 2279
CspCI CAANNNNNGTGG 2 cut(s) 477, 512
DpnI GATC 9 cut(s) 456, 462, 815, 1441, 1649, 1673, 1872, 2091, 2097
DpnII GATC 9 cut(s) 454, 460, 813, 1439, 1647, 1671, 1870, 2089, 2095
EaeI YGGCCR 1 cut(s) 25
Eam1104I CTCTTC 2 cut(s) 302, 1764
EarI CTCTTC 2 cut(s) 302, 1764
Ecl136II GAGCTC 1 cut(s) 1757
Eco130I CCWWGG 5 cut(s) 321, 604, 792, 1511, 2338
Eco24I GRGCYC 1 cut(s) 1759
Eco31I GGTCTC 1 cut(s) 799
Eco32I GATATC 1 cut(s) 1572
Eco47I GGWCC 2 cut(s) 1053, 1062
Eco47III AGCGCT 1 cut(s) 1939
Eco53kI GAGCTC 1 cut(s) 1757
Eco81I CCTNAGG 1 cut(s) 1958
Eco88I CYCGRG 1 cut(s) 1416
EcoICRI GAGCTC 1 cut(s) 1757
EcoRII CCWGG 4 cut(s) 555, 615, 653, 2313
EcoRV GATATC 1 cut(s) 1572
EcoT14I CCWWGG 5 cut(s) 321, 604, 792, 1511, 2338
EcoT38I GRGCYC 1 cut(s) 1759
ErhI CCWWGG 5 cut(s) 321, 604, 792, 1511, 2338
FaqI GGGAC 2 cut(s) 1846, 2143
FbaI TGATCA 2 cut(s) 454, 460
Fnu4HI GCNGC 5 cut(s) 318, 708, 1578, 1716, 2049
FokI GGATG 4 cut(s) 479, 1561, 1910, 2279
FriOI GRGCYC 1 cut(s) 1759
Fsp4HI GCNGC 5 cut(s) 318, 708, 1578, 1716, 2049
GlaI GCGC 3 cut(s) 294, 1004, 1939
GluI GCNGC 5 cut(s) 318, 708, 1578, 1716, 2049
GsaI CCCAGC 1 cut(s) 152
GsuI CTGGAG 2 cut(s) 260, 1010
HaeII RGCGCY 1 cut(s) 1941
HaeIII GGCC 4 cut(s) 27, 289, 1620, 2337
HapII CCGG 5 cut(s) 28, 119, 1228, 1383, 2280
HgaI GACGC 1 cut(s) 200
HhaI GCGC 3 cut(s) 295, 1005, 1940
Hin6I GCGC 3 cut(s) 293, 1003, 1938
HinP1I GCGC 3 cut(s) 293, 1003, 1938
HindIII AAGCTT 4 cut(s) 758, 1492, 1815, 2303
HinfI GANTC 7 cut(s) 4, 819, 970, 1356, 1452, 1693, 2343
HpaII CCGG 5 cut(s) 28, 119, 1228, 1383, 2280
HphI GGTGA 9 cut(s) 94, 215, 292, 605, 949, 1002, 1372, 1675, 2294
Hpy166II GTNNAC 2 cut(s) 1193, 1268
Hpy188I TCNGA 6 cut(s) 518, 552, 727, 818, 1119, 2266
Hpy8I GTNNAC 2 cut(s) 1193, 1268
HpyAV CCTTC 7 cut(s) 76, 921, 1156, 1835, 2144, 2279, 2430
HpyCH4III ACNGT 2 cut(s) 91, 770
HpyF10VI GCNNNNNNNGC 9 cut(s) 52, 149, 236, 286, 323, 338, 1000, 1349, 1586
HspAI GCGC 3 cut(s) 293, 1003, 1938
Ksp22I TGATCA 2 cut(s) 454, 460
Kzo9I GATC 9 cut(s) 454, 460, 813, 1439, 1647, 1671, 1870, 2089, 2095
LguI GCTCTTC 2 cut(s) 302, 1764
LmnI GCTCC 8 cut(s) 518, 991, 1230, 1754, 1906, 1959, 2123, 2195
Lsp1109I GCAGC 5 cut(s) 329, 694, 1589, 1727, 2035
LweI GCATC 4 cut(s) 196, 536, 940, 2358
MabI ACCWGGT 2 cut(s) 555, 615
MaeIII GTNAC 2 cut(s) 364, 1378
MalI GATC 9 cut(s) 456, 462, 815, 1441, 1649, 1673, 1872, 2091, 2097
MboI GATC 9 cut(s) 454, 460, 813, 1439, 1647, 1671, 1870, 2089, 2095
MfeI CAATTG 2 cut(s) 1362, 1638
MflI RGATCY 1 cut(s) 2095
MhlI GDGCHC 7 cut(s) 118, 945, 1235, 1245, 1289, 1423, 1759
MlyI GAGTC 3 cut(s) 13, 979, 1350
MmeI TCCRAC 3 cut(s) 1884, 2025, 2277
MroXI GAANNNNTTC 2 cut(s) 218, 759
MseI TTAA 8 cut(s) 176, 878, 1517, 1709, 1970, 2030, 2231, 2307
MslI CAYNNNNRTG 2 cut(s) 1282, 2128
MspA1I CMGCKG 2 cut(s) 280, 1580
MspCI CTTAAG 2 cut(s) 877, 2306
MspI CCGG 5 cut(s) 28, 119, 1228, 1383, 2280
MspR9I CCNGG 5 cut(s) 119, 557, 617, 655, 2315
MunI CAATTG 2 cut(s) 1362, 1638
Mva1269I GAATGC 2 cut(s) 1160, 1277
MvaI CCWGG 4 cut(s) 557, 617, 655, 2315
MwoI GCNNNNNNNGC 9 cut(s) 52, 149, 236, 286, 323, 338, 1000, 1349, 1586
NciI CCSGG 1 cut(s) 119
NdeII GATC 9 cut(s) 454, 460, 813, 1439, 1647, 1671, 1870, 2089, 2095
NlaIV GGNNCC 3 cut(s) 1064, 1226, 1908
NmuCI GTSAC 1 cut(s) 1378
NspI RCATGY 2 cut(s) 36, 230
PaeI GCATGC 1 cut(s) 230
PaeR7I CTCGAG 1 cut(s) 1416
PagI TCATGA 3 cut(s) 457, 568, 1081
PciI ACATGT 1 cut(s) 32
PciSI GCTCTTC 2 cut(s) 302, 1764
PctI GAATGC 2 cut(s) 1160, 1277
PdmI GAANNNNTTC 2 cut(s) 218, 759
PfeI GAWTC 4 cut(s) 819, 1452, 1693, 2343
PflMI CCANNNNNTGG 1 cut(s) 988
PinAI ACCGGT 1 cut(s) 2279
PkrI GCNGC 5 cut(s) 319, 709, 1579, 1717, 2050
PleI GAGTC 3 cut(s) 12, 978, 1350
PpsI GAGTC 3 cut(s) 12, 978, 1350
PscI ACATGT 1 cut(s) 32
PsiI TTATAA 1 cut(s) 1329
Psp124BI GAGCTC 1 cut(s) 1759
Psp6I CCWGG 4 cut(s) 555, 615, 653, 2313
PspFI CCCAGC 1 cut(s) 148
PspGI CCWGG 4 cut(s) 555, 615, 653, 2313
PspN4I GGNNCC 3 cut(s) 1064, 1226, 1908
PspPI GGNCC 4 cut(s) 287, 1053, 1062, 1619
PspXI VCTCGAGB 1 cut(s) 1416
PstI CTGCAG 1 cut(s) 2053
PstNI CAGNNNCTG 3 cut(s) 332, 1580, 1658
PsuI RGATCY 1 cut(s) 2095
PvuII CAGCTG 2 cut(s) 280, 1580
RseI CAYNNNNRTG 2 cut(s) 1282, 2128
SacI GAGCTC 1 cut(s) 1759
SapI GCTCTTC 2 cut(s) 302, 1764
SaqAI TTAA 8 cut(s) 176, 878, 1517, 1709, 1970, 2030, 2231, 2307
SatI GCNGC 5 cut(s) 318, 708, 1578, 1716, 2049
Sau3AI GATC 9 cut(s) 454, 460, 813, 1439, 1647, 1671, 1870, 2089, 2095
Sau96I GGNCC 4 cut(s) 287, 1053, 1062, 1619
ScaI AGTACT 3 cut(s) 442, 508, 2373
SchI GAGTC 3 cut(s) 13, 979, 1350
ScrFI CCNGG 5 cut(s) 119, 557, 617, 655, 2315
SduI GDGCHC 7 cut(s) 118, 945, 1235, 1245, 1289, 1423, 1759
SexAI ACCWGGT 2 cut(s) 555, 615
SfaNI GCATC 4 cut(s) 196, 536, 940, 2358
SfcI CTRYAG 2 cut(s) 744, 2049
Sfr274I CTCGAG 1 cut(s) 1416
SinI GGWCC 2 cut(s) 1053, 1062
SlaI CTCGAG 1 cut(s) 1416
SmiMI CAYNNNNRTG 2 cut(s) 1282, 2128
SmlI CTYRAG 5 cut(s) 693, 877, 998, 1416, 2306
SmoI CTYRAG 5 cut(s) 693, 877, 998, 1416, 2306
SpeI ACTAGT 2 cut(s) 136, 2354
SphI GCATGC 1 cut(s) 230
SsiI CCGC 1 cut(s) 385
SspI AATATT 2 cut(s) 575, 1521
SstI GAGCTC 1 cut(s) 1759
StyD4I CCNGG 5 cut(s) 117, 555, 615, 653, 2313
StyI CCWWGG 5 cut(s) 321, 604, 792, 1511, 2338
TaaI ACNGT 2 cut(s) 91, 770
TaqI TCGA 4 cut(s) 1068, 1417, 1629, 1869
TatI WGTACW 5 cut(s) 440, 506, 2008, 2167, 2371
TfiI GAWTC 4 cut(s) 819, 1452, 1693, 2343
Tru1I TTAA 8 cut(s) 176, 878, 1517, 1709, 1970, 2030, 2231, 2307
Tru9I TTAA 8 cut(s) 176, 878, 1517, 1709, 1970, 2030, 2231, 2307
TscAI CASTG 6 cut(s) 333, 430, 1174, 1192, 1839, 2028
TseFI GTSAC 1 cut(s) 1378
TseI GCWGC 5 cut(s) 317, 707, 1577, 1715, 2048
Tsp45I GTSAC 1 cut(s) 1378
TspDTI ATGAA 7 cut(s) 422, 585, 903, 1098, 1347, 1912, 2096
TspGWI ACGGA 1 cut(s) 59
TspRI CASTG 6 cut(s) 333, 430, 1174, 1192, 1839, 2028
Van91I CCANNNNNTGG 1 cut(s) 988
Vha464I CTTAAG 2 cut(s) 877, 2306
VpaK11BI GGWCC 2 cut(s) 1053, 1062
XapI RAATTY 2 cut(s) 1039, 1478
XbaI TCTAGA 2 cut(s) 1237, 2092
XceI RCATGY 2 cut(s) 36, 230
XhoI CTCGAG 1 cut(s) 1416
XmaJI CCTAGG 1 cut(s) 2338
XmnI GAANNNNTTC 2 cut(s) 218, 759
ZrmI AGTACT 3 cut(s) 442, 508, 2373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.