Rmu_sc0011900.1_g000004

Glycine-rich RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011900.1
OG0015367
Physical Location & Seq
Forward (+)
13588 .. 15137
1550 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011900.1_g000004.1.cds

Sequence Viewer

Length: 399 bp
atggcgctgcttagaagagcggtgaggtcgggccctagtttatcatcttcctctcttattcctccggcgattctaatctcttgccgggcactaactactaagctcttcgtcggtggactatcattttacactacggaaaagggattacaagaagcattctctcagtatggtcaagtggttgaagctcaagtagtatcagacagagtctcggaccgatcaaaaggatttggatttgttacctttgcttcacaagatgaagcccacaaagccgtagaggagatgaatggaaaggcgctgaatgggcgtgttatatttgtggactatgcaaagcccaaatcagattatggtggtggtgtgccgattgcaagaggacctccagaactgaaaattgacggctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006417 GO:0006950 GO:0006996 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010494 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0016043 GO:0017148 GO:0019219 GO:0019222 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031330 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032270 GO:0032991 GO:0034063 GO:0034248 GO:0034249 GO:0034250 GO:0034622 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043487 GO:0043488 GO:0043489 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045182 GO:0045727 GO:0045934 GO:0047484 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065003 GO:0065007 GO:0065008 GO:0070013 GO:0070181 GO:0070925 GO:0071826 GO:0071840 GO:0080090 GO:0080134 GO:0097159 GO:1901000 GO:1901002 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312 GO:1990904 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

132

Amino Acids

14.11

Weight (kDa)

9.13

Isoelectric Point (pI)

46.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015367)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06210
fragaria_vesca FvH4_6g19520 FvH4_6g19520
malus_domestica MD14G1031800.v1.1
prunus_persica Prupe.7G101000_v2.0.a1
pyrus_communis pycom14g02870
rosa_chinensis RchiOBHm_Chr3g0474861
rosa_laevigata RLG00000023889
rosa_multiflora Rmu_sc0011900.1_g000004
rosa_roxburghii Rroxscaffold_6G00406790
rosa_rugosa Rorug03G0144700
rosa_samantha Rh3AG194200 Rh3BG224100 Rh3CG219000 Rh3DG220000
rosa_wichuraiana Rw3G017690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 20
AciI CCGC 1 cut(s) 20
AgsI TTSAA 1 cut(s) 182
AluBI AGCT 2 cut(s) 103, 185
AluI AGCT 2 cut(s) 103, 185
Alw26I GTCTC 1 cut(s) 211
AoxI GGCC 1 cut(s) 31
ApaI GGGCCC 1 cut(s) 35
ApeKI GCWGC 1 cut(s) 7
AspLEI GCGC 2 cut(s) 7, 295
AspS9I GGNCC 4 cut(s) 31, 32, 211, 371
AsuC2I CCSGG 1 cut(s) 86
AsuHPI GGTGA 1 cut(s) 34
AvaII GGWCC 2 cut(s) 211, 371
BaeGI GKGCMC 2 cut(s) 35, 91
BanII GRGCYC 1 cut(s) 35
BceAI ACGGC 1 cut(s) 254
BcnI CCSGG 1 cut(s) 86
BcoDI GTCTC 1 cut(s) 211
BfaI CTAG 1 cut(s) 36
BfoI RGCGCY 2 cut(s) 8, 296
BisI GCNGC 1 cut(s) 8
BlsI GCNGC 1 cut(s) 9
Bme1390I CCNGG 1 cut(s) 86
Bme18I GGWCC 2 cut(s) 211, 371
BmgT120I GGNCC 4 cut(s) 31, 32, 211, 371
BmiI GGNNCC 1 cut(s) 33
BmrFI CCNGG 1 cut(s) 86
BpmI CTGGAG 1 cut(s) 360
BpuEI CTTGAG 1 cut(s) 171
BpuMI CCSGG 1 cut(s) 86
BsaBI GATNNNNATC 1 cut(s) 74
Bse8I GATNNNNATC 1 cut(s) 74
BseJI GATNNNNATC 1 cut(s) 74
BseMII CTCAG 1 cut(s) 176
BseRI GAGGAG 1 cut(s) 290
BseSI GKGCMC 2 cut(s) 35, 91
BshFI GGCC 1 cut(s) 33
BsiSI CCGG 2 cut(s) 65, 85
BsmAI GTCTC 1 cut(s) 211
BsmI GAATGC 1 cut(s) 155
BsnI GGCC 1 cut(s) 33
Bsp120I GGGCCC 1 cut(s) 31
Bsp1286I GDGCHC 2 cut(s) 35, 91
Bsp143I GATC 1 cut(s) 215
BspACI CCGC 1 cut(s) 20
BspANI GGCC 1 cut(s) 33
BspCNI CTCAG 1 cut(s) 175
BspLI GGNNCC 1 cut(s) 33
BspQI GCTCTTC 2 cut(s) 10, 110
BsrBI CCGCTC 1 cut(s) 20
BssMI GATC 1 cut(s) 215
Bst6I CTCTTC 2 cut(s) 10, 110
BstDEI CTNAG 3 cut(s) 11, 99, 162
BstH2I RGCGCY 2 cut(s) 8, 296
BstHHI GCGC 2 cut(s) 7, 295
BstKTI GATC 1 cut(s) 218
BstMAI GTCTC 1 cut(s) 211
BstMBI GATC 1 cut(s) 215
BstMWI GCNNNNNNNGC 2 cut(s) 266, 301
BstSCI CCNGG 1 cut(s) 84
BstSLI GKGCMC 2 cut(s) 35, 91
BsuRI GGCC 1 cut(s) 33
CfoI GCGC 2 cut(s) 7, 295
Cfr13I GGNCC 4 cut(s) 31, 32, 211, 371
CpoI CGGWCCG 1 cut(s) 211
CspI CGGWCCG 1 cut(s) 211
CviJI RGCY 7 cut(s) 33, 103, 185, 260, 269, 331, 396
CviKI_1 RGCY 7 cut(s) 33, 103, 185, 260, 269, 331, 396
DdeI CTNAG 3 cut(s) 11, 99, 162
DpnI GATC 1 cut(s) 217
DpnII GATC 1 cut(s) 215
Eam1104I CTCTTC 2 cut(s) 10, 110
EarI CTCTTC 2 cut(s) 10, 110
Eco24I GRGCYC 1 cut(s) 35
Eco47I GGWCC 2 cut(s) 211, 371
EcoO109I RGGNCCY 2 cut(s) 32, 371
EcoT38I GRGCYC 1 cut(s) 35
FaiI YATR 4 cut(s) 168, 311, 324, 345
Fnu4HI GCNGC 1 cut(s) 8
FriOI GRGCYC 1 cut(s) 35
Fsp4HI GCNGC 1 cut(s) 8
FspBI CTAG 1 cut(s) 36
GlaI GCGC 2 cut(s) 6, 294
GluI GCNGC 1 cut(s) 8
GsuI CTGGAG 1 cut(s) 360
HaeII RGCGCY 2 cut(s) 8, 296
HaeIII GGCC 1 cut(s) 33
HapII CCGG 2 cut(s) 65, 85
HhaI GCGC 2 cut(s) 7, 295
Hin6I GCGC 2 cut(s) 5, 293
HinP1I GCGC 2 cut(s) 5, 293
HinfI GANTC 2 cut(s) 70, 204
HpaII CCGG 2 cut(s) 65, 85
HphI GGTGA 1 cut(s) 34
Hpy166II GTNNAC 2 cut(s) 116, 319
Hpy188I TCNGA 3 cut(s) 199, 211, 340
Hpy188III TCNNGA 1 cut(s) 377
Hpy8I GTNNAC 2 cut(s) 116, 319
Hpy99I CGWCG 1 cut(s) 113
HpyCH4V TGCA 2 cut(s) 326, 365
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 301
HpyF3I CTNAG 3 cut(s) 11, 99, 162
HspAI GCGC 2 cut(s) 5, 293
Kzo9I GATC 1 cut(s) 215
LguI GCTCTTC 2 cut(s) 10, 110
LpnPI CCDG 3 cut(s) 78, 98, 390
MaeI CTAG 1 cut(s) 36
MaeIII GTNAC 1 cut(s) 235
MalI GATC 1 cut(s) 217
MbiI CCGCTC 1 cut(s) 20
MboI GATC 1 cut(s) 215
MboII GAAGA 3 cut(s) 27, 39, 97
MhlI GDGCHC 2 cut(s) 35, 91
MluCI AATT 1 cut(s) 387
MlyI GAGTC 1 cut(s) 213
MnlI CCTC 6 cut(s) 18, 61, 72, 268, 362, 384
MspI CCGG 2 cut(s) 65, 85
MspR9I CCNGG 1 cut(s) 86
Mva1269I GAATGC 1 cut(s) 155
MwoI GCNNNNNNNGC 2 cut(s) 266, 301
NciI CCSGG 1 cut(s) 86
NdeII GATC 1 cut(s) 215
NlaIV GGNNCC 1 cut(s) 33
PciSI GCTCTTC 2 cut(s) 10, 110
PctI GAATGC 1 cut(s) 155
PfeI GAWTC 1 cut(s) 70
PflFI GACNNNGTC 1 cut(s) 203
PkrI GCNGC 1 cut(s) 9
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
PpuMI RGGWCCY 1 cut(s) 371
Psp5II RGGWCCY 1 cut(s) 371
PspN4I GGNNCC 1 cut(s) 33
PspOMI GGGCCC 1 cut(s) 31
PspPI GGNCC 4 cut(s) 31, 32, 211, 371
PspPPI RGGWCCY 1 cut(s) 371
PsyI GACNNNGTC 1 cut(s) 203
Rsr2I CGGWCCG 1 cut(s) 211
RsrII CGGWCCG 1 cut(s) 211
SapI GCTCTTC 2 cut(s) 10, 110
SatI GCNGC 1 cut(s) 8
Sau3AI GATC 1 cut(s) 215
Sau96I GGNCC 4 cut(s) 31, 32, 211, 371
SchI GAGTC 1 cut(s) 213
ScrFI CCNGG 1 cut(s) 86
SduI GDGCHC 2 cut(s) 35, 91
SetI ASST 5 cut(s) 29, 105, 187, 242, 376
SinI GGWCC 2 cut(s) 211, 371
SmlI CTYRAG 1 cut(s) 186
SmoI CTYRAG 1 cut(s) 186
Sse9I AATT 1 cut(s) 387
SsiI CCGC 1 cut(s) 20
SspMI CTAG 1 cut(s) 36
StyD4I CCNGG 1 cut(s) 84
TaqII GACCGA 1 cut(s) 228
TasI AATT 1 cut(s) 387
TfiI GAWTC 1 cut(s) 70
TseI GCWGC 1 cut(s) 7
TspDTI ATGAA 2 cut(s) 270, 296
TspGWI ACGGA 1 cut(s) 149
Tth111I GACNNNGTC 1 cut(s) 203
VpaK11BI GGWCC 2 cut(s) 211, 371
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.