Rh3BG224100

Glycine-rich RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0015367
Physical Location & Seq
Forward (+)
20437743 .. 20439570
1828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG224100.1

Sequence Viewer

Length: 399 bp
ATGGCGCTGCTTAGAAGAGCGGTGAGGTCGGGCCCTAGTTTATCATCTTCCTCTCTTATTCCTCCGGCGATTCTAATCTCTTGCCGGGCACTAACTACTAAGCTCTTCGTCGGTGGACTATCATTTTACACTACGGAAAAGGGATTACAAGAAGCATTCTCTCAGTATGGTCAAGTGGTTGAAGCTCAAGTAGTATCAGACAGAGTCTCGGACCGATCAAAAGGATTTGGATTTGTTACCTTTGCTTCACAAGATGAAGCCCACAAAGCCGTAGAGGAGTTGAATGGAAAGGCGCTGAATGGGCGTGTTATATTTGTGGACTATGCAAAGCCCAAATCAGATTATGGTGGTGGTGTGCCAATTGCAAGAGGACCTCCAGAACCGAAAATTGACGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006417 GO:0006950 GO:0006996 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010494 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0016043 GO:0017148 GO:0019219 GO:0019222 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031330 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032270 GO:0032991 GO:0034063 GO:0034248 GO:0034249 GO:0034250 GO:0034622 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043487 GO:0043488 GO:0043489 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045182 GO:0045727 GO:0045934 GO:0047484 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065003 GO:0065007 GO:0065008 GO:0070013 GO:0070181 GO:0070925 GO:0071826 GO:0071840 GO:0080090 GO:0080134 GO:0097159 GO:1901000 GO:1901002 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312 GO:1990904 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

132

Amino Acids

14.08

Weight (kDa)

9.13

Isoelectric Point (pI)

48.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 35 - 104 7.1e-24 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015367)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06210
fragaria_vesca FvH4_6g19520 FvH4_6g19520
malus_domestica MD14G1031800.v1.1
prunus_persica Prupe.7G101000_v2.0.a1
pyrus_communis pycom14g02870
rosa_chinensis RchiOBHm_Chr3g0474861
rosa_laevigata RLG00000023889
rosa_multiflora Rmu_sc0011900.1_g000004
rosa_roxburghii Rroxscaffold_6G00406790
rosa_rugosa Rorug03G0144700
rosa_samantha Rh3AG194200 Rh3BG224100 Rh3CG219000 Rh3DG220000
rosa_wichuraiana Rw3G017690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 20
AciI CCGC 1 cut(s) 20
AgsI TTSAA 2 cut(s) 182, 283
AluBI AGCT 2 cut(s) 103, 185
AluI AGCT 2 cut(s) 103, 185
Alw26I GTCTC 1 cut(s) 211
AoxI GGCC 1 cut(s) 31
ApaI GGGCCC 1 cut(s) 35
ApeKI GCWGC 1 cut(s) 7
AspLEI GCGC 2 cut(s) 7, 295
AspS9I GGNCC 4 cut(s) 31, 32, 211, 371
AsuC2I CCSGG 1 cut(s) 86
AsuHPI GGTGA 1 cut(s) 34
AvaII GGWCC 2 cut(s) 211, 371
BaeGI GKGCMC 2 cut(s) 35, 91
BanII GRGCYC 1 cut(s) 35
BceAI ACGGC 1 cut(s) 254
BcnI CCSGG 1 cut(s) 86
BcoDI GTCTC 1 cut(s) 211
BfaI CTAG 1 cut(s) 36
BfoI RGCGCY 2 cut(s) 8, 296
BisI GCNGC 1 cut(s) 8
BlsI GCNGC 1 cut(s) 9
Bme1390I CCNGG 1 cut(s) 86
Bme18I GGWCC 2 cut(s) 211, 371
BmgT120I GGNCC 4 cut(s) 31, 32, 211, 371
BmiI GGNNCC 1 cut(s) 33
BmrFI CCNGG 1 cut(s) 86
BpmI CTGGAG 1 cut(s) 360
BpuEI CTTGAG 1 cut(s) 171
BpuMI CCSGG 1 cut(s) 86
BsaBI GATNNNNATC 1 cut(s) 74
Bse8I GATNNNNATC 1 cut(s) 74
BseJI GATNNNNATC 1 cut(s) 74
BseMII CTCAG 1 cut(s) 176
BseRI GAGGAG 1 cut(s) 290
BseSI GKGCMC 2 cut(s) 35, 91
BshFI GGCC 1 cut(s) 33
BsiSI CCGG 2 cut(s) 65, 85
BsmAI GTCTC 1 cut(s) 211
BsmI GAATGC 1 cut(s) 155
BsnI GGCC 1 cut(s) 33
Bsp120I GGGCCC 1 cut(s) 31
Bsp1286I GDGCHC 2 cut(s) 35, 91
Bsp143I GATC 1 cut(s) 215
BspACI CCGC 1 cut(s) 20
BspANI GGCC 1 cut(s) 33
BspCNI CTCAG 1 cut(s) 175
BspLI GGNNCC 1 cut(s) 33
BspQI GCTCTTC 2 cut(s) 10, 110
BsrBI CCGCTC 1 cut(s) 20
BssMI GATC 1 cut(s) 215
Bst6I CTCTTC 2 cut(s) 10, 110
BstDEI CTNAG 3 cut(s) 11, 99, 162
BstH2I RGCGCY 2 cut(s) 8, 296
BstHHI GCGC 2 cut(s) 7, 295
BstKTI GATC 1 cut(s) 218
BstMAI GTCTC 1 cut(s) 211
BstMBI GATC 1 cut(s) 215
BstMWI GCNNNNNNNGC 2 cut(s) 266, 301
BstSCI CCNGG 1 cut(s) 84
BstSLI GKGCMC 2 cut(s) 35, 91
BsuRI GGCC 1 cut(s) 33
CfoI GCGC 2 cut(s) 7, 295
Cfr13I GGNCC 4 cut(s) 31, 32, 211, 371
CpoI CGGWCCG 1 cut(s) 211
CspI CGGWCCG 1 cut(s) 211
CviJI RGCY 7 cut(s) 33, 103, 185, 260, 269, 331, 396
CviKI_1 RGCY 7 cut(s) 33, 103, 185, 260, 269, 331, 396
DdeI CTNAG 3 cut(s) 11, 99, 162
DpnI GATC 1 cut(s) 217
DpnII GATC 1 cut(s) 215
Eam1104I CTCTTC 2 cut(s) 10, 110
EarI CTCTTC 2 cut(s) 10, 110
Eco24I GRGCYC 1 cut(s) 35
Eco47I GGWCC 2 cut(s) 211, 371
EcoO109I RGGNCCY 2 cut(s) 32, 371
EcoT38I GRGCYC 1 cut(s) 35
FaiI YATR 4 cut(s) 168, 311, 324, 345
Fnu4HI GCNGC 1 cut(s) 8
FriOI GRGCYC 1 cut(s) 35
Fsp4HI GCNGC 1 cut(s) 8
FspBI CTAG 1 cut(s) 36
GlaI GCGC 2 cut(s) 6, 294
GluI GCNGC 1 cut(s) 8
GsuI CTGGAG 1 cut(s) 360
HaeII RGCGCY 2 cut(s) 8, 296
HaeIII GGCC 1 cut(s) 33
HapII CCGG 2 cut(s) 65, 85
HhaI GCGC 2 cut(s) 7, 295
Hin6I GCGC 2 cut(s) 5, 293
HinP1I GCGC 2 cut(s) 5, 293
HinfI GANTC 2 cut(s) 70, 204
HpaII CCGG 2 cut(s) 65, 85
HphI GGTGA 1 cut(s) 34
Hpy166II GTNNAC 2 cut(s) 116, 319
Hpy188I TCNGA 3 cut(s) 199, 211, 340
Hpy188III TCNNGA 1 cut(s) 377
Hpy8I GTNNAC 2 cut(s) 116, 319
Hpy99I CGWCG 1 cut(s) 113
HpyCH4V TGCA 2 cut(s) 326, 365
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 301
HpyF3I CTNAG 3 cut(s) 11, 99, 162
HspAI GCGC 2 cut(s) 5, 293
Kzo9I GATC 1 cut(s) 215
LguI GCTCTTC 2 cut(s) 10, 110
LpnPI CCDG 3 cut(s) 78, 98, 390
MaeI CTAG 1 cut(s) 36
MaeIII GTNAC 1 cut(s) 235
MalI GATC 1 cut(s) 217
MbiI CCGCTC 1 cut(s) 20
MboI GATC 1 cut(s) 215
MboII GAAGA 3 cut(s) 27, 39, 97
MfeI CAATTG 1 cut(s) 360
MhlI GDGCHC 2 cut(s) 35, 91
MluCI AATT 2 cut(s) 360, 387
MlyI GAGTC 1 cut(s) 213
MnlI CCTC 6 cut(s) 18, 61, 72, 268, 362, 384
MspI CCGG 2 cut(s) 65, 85
MspR9I CCNGG 1 cut(s) 86
MunI CAATTG 1 cut(s) 360
Mva1269I GAATGC 1 cut(s) 155
MwoI GCNNNNNNNGC 2 cut(s) 266, 301
NciI CCSGG 1 cut(s) 86
NdeII GATC 1 cut(s) 215
NlaIV GGNNCC 1 cut(s) 33
PciSI GCTCTTC 2 cut(s) 10, 110
PctI GAATGC 1 cut(s) 155
PfeI GAWTC 1 cut(s) 70
PflFI GACNNNGTC 1 cut(s) 203
PkrI GCNGC 1 cut(s) 9
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
PpuMI RGGWCCY 1 cut(s) 371
Psp5II RGGWCCY 1 cut(s) 371
PspN4I GGNNCC 1 cut(s) 33
PspOMI GGGCCC 1 cut(s) 31
PspPI GGNCC 4 cut(s) 31, 32, 211, 371
PspPPI RGGWCCY 1 cut(s) 371
PsyI GACNNNGTC 1 cut(s) 203
Rsr2I CGGWCCG 1 cut(s) 211
RsrII CGGWCCG 1 cut(s) 211
SapI GCTCTTC 2 cut(s) 10, 110
SatI GCNGC 1 cut(s) 8
Sau3AI GATC 1 cut(s) 215
Sau96I GGNCC 4 cut(s) 31, 32, 211, 371
SchI GAGTC 1 cut(s) 213
ScrFI CCNGG 1 cut(s) 86
SduI GDGCHC 2 cut(s) 35, 91
SetI ASST 5 cut(s) 29, 105, 187, 242, 376
SinI GGWCC 2 cut(s) 211, 371
SmlI CTYRAG 1 cut(s) 186
SmoI CTYRAG 1 cut(s) 186
Sse9I AATT 2 cut(s) 360, 387
SsiI CCGC 1 cut(s) 20
SspMI CTAG 1 cut(s) 36
StyD4I CCNGG 1 cut(s) 84
TaqII GACCGA 1 cut(s) 228
TasI AATT 2 cut(s) 360, 387
TfiI GAWTC 1 cut(s) 70
TseI GCWGC 1 cut(s) 7
TspDTI ATGAA 1 cut(s) 270
TspGWI ACGGA 1 cut(s) 149
Tth111I GACNNNGTC 1 cut(s) 203
VpaK11BI GGWCC 2 cut(s) 211, 371
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.