FvH4_6g19520

Glycine-rich RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015367
Physical Location & Seq
Forward (+)
13040389 .. 13042338
1950 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g19520.t1

Sequence Viewer

Length: 402 bp
ATGGCGCTGCTTAGGAGAGCGGTGAGGTCAGGCCCTGGTTTATCAACTTCCTCCTCTATTATTCCTCCGGCGATTTTAATCTCGTGCAGGGCACTTTCTACTAAGCTCTTCGTCGGTGGACTATCATTCTACACCACGGATAAGGGATTACAGGAAGCATTCTCTCAATATGGTCAAGTGGTTGAAGCCCAAGTAGTATCAGACAGAGTCTCGGACCGATCAAAAGGATTTGGATTTGTTACCTTTGCTTCACAAGATGAAGCCCACAAAGCCGTTGAGGAGATGAATGGAAAGGCATTGAATGGCCGTGTCATATTTGTGGATTATGCAAAGCCCAAATCAGATTACGGTGGTGGGATGCCAATTGCGAGAGGACCTCCAAATCTGAAAAATGACAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006417 GO:0006950 GO:0006996 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010494 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0016043 GO:0017148 GO:0019219 GO:0019222 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031330 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032270 GO:0032991 GO:0034063 GO:0034248 GO:0034249 GO:0034250 GO:0034622 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043487 GO:0043488 GO:0043489 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045182 GO:0045727 GO:0045934 GO:0047484 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065003 GO:0065007 GO:0065008 GO:0070013 GO:0070181 GO:0070925 GO:0071826 GO:0071840 GO:0080090 GO:0080134 GO:0097159 GO:1901000 GO:1901002 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312 GO:1990904 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

134

Amino Acids

14.2

Weight (kDa)

9.37

Isoelectric Point (pI)

44.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 36 - 105 1.7e-23 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015367)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06210
fragaria_vesca FvH4_6g19520 FvH4_6g19520
malus_domestica MD14G1031800.v1.1
prunus_persica Prupe.7G101000_v2.0.a1
pyrus_communis pycom14g02870
rosa_chinensis RchiOBHm_Chr3g0474861
rosa_laevigata RLG00000023889
rosa_multiflora Rmu_sc0011900.1_g000004
rosa_roxburghii Rroxscaffold_6G00406790
rosa_rugosa Rorug03G0144700
rosa_samantha Rh3AG194200 Rh3BG224100 Rh3CG219000 Rh3DG220000
rosa_wichuraiana Rw3G017690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 20
AciI CCGC 1 cut(s) 20
AcoI YGGCCR 1 cut(s) 304
AgsI TTSAA 2 cut(s) 185, 301
AjnI CCWGG 1 cut(s) 34
AluBI AGCT 2 cut(s) 106, 399
AluI AGCT 2 cut(s) 106, 399
Alw26I GTCTC 1 cut(s) 214
AlwNI CAGNNNCTG 1 cut(s) 35
AoxI GGCC 2 cut(s) 31, 304
ApeKI GCWGC 1 cut(s) 7
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 3 cut(s) 32, 214, 374
AsuHPI GGTGA 1 cut(s) 34
AvaII GGWCC 2 cut(s) 214, 374
BaeGI GKGCMC 1 cut(s) 94
BauI CACGAG 1 cut(s) 82
BceAI ACGGC 2 cut(s) 257, 291
BciT130I CCWGG 1 cut(s) 36
BcoDI GTCTC 1 cut(s) 214
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 1 cut(s) 8
BlsI GCNGC 1 cut(s) 9
Bme1390I CCNGG 1 cut(s) 36
Bme18I GGWCC 2 cut(s) 214, 374
BmgT120I GGNCC 3 cut(s) 32, 214, 374
BmrFI CCNGG 1 cut(s) 36
BmsI GCATC 1 cut(s) 348
BplI GAGNNNNNCTC 2 cut(s) 361, 393
Bpu10I CCTNAGC 1 cut(s) 11
BsaBI GATNNNNATC 1 cut(s) 77
BsaJI CCNNGG 2 cut(s) 34, 135
Bse8I GATNNNNATC 1 cut(s) 77
BseBI CCWGG 1 cut(s) 36
BseDI CCNNGG 2 cut(s) 34, 135
BseGI GGATG 1 cut(s) 363
BseJI GATNNNNATC 1 cut(s) 77
BseRI GAGGAG 2 cut(s) 43, 293
BseSI GKGCMC 1 cut(s) 94
BsgI GTGCAG 1 cut(s) 106
BshFI GGCC 2 cut(s) 33, 306
BsiSI CCGG 1 cut(s) 68
BsmAI GTCTC 1 cut(s) 214
BsmI GAATGC 1 cut(s) 158
BsnI GGCC 2 cut(s) 33, 306
Bsp1286I GDGCHC 1 cut(s) 94
Bsp143I GATC 1 cut(s) 218
BspACI CCGC 1 cut(s) 20
BspANI GGCC 2 cut(s) 33, 306
BspQI GCTCTTC 1 cut(s) 113
BsrBI CCGCTC 1 cut(s) 20
BssECI CCNNGG 2 cut(s) 34, 135
BssMI GATC 1 cut(s) 218
BssSI CACGAG 1 cut(s) 82
Bst2BI CACGAG 1 cut(s) 82
Bst2UI CCWGG 1 cut(s) 36
Bst4CI ACNGT 1 cut(s) 350
Bst6I CTCTTC 1 cut(s) 113
BstDEI CTNAG 2 cut(s) 11, 102
BstDSI CCRYGG 1 cut(s) 135
BstF5I GGATG 1 cut(s) 363
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 1 cut(s) 221
BstMAI GTCTC 1 cut(s) 214
BstMBI GATC 1 cut(s) 218
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstNI CCWGG 1 cut(s) 36
BstSCI CCNGG 1 cut(s) 34
BstSLI GKGCMC 1 cut(s) 94
BsuRI GGCC 2 cut(s) 33, 306
BtgI CCRYGG 1 cut(s) 135
BtsCI GGATG 1 cut(s) 363
CaiI CAGNNNCTG 1 cut(s) 35
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 3 cut(s) 32, 214, 374
CpoI CGGWCCG 1 cut(s) 214
CspI CGGWCCG 1 cut(s) 214
CviJI RGCY 8 cut(s) 33, 106, 188, 263, 272, 306, 334, 399
CviKI_1 RGCY 8 cut(s) 33, 106, 188, 263, 272, 306, 334, 399
DdeI CTNAG 2 cut(s) 11, 102
DpnI GATC 1 cut(s) 220
DpnII GATC 1 cut(s) 218
EaeI YGGCCR 1 cut(s) 304
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
Eco47I GGWCC 2 cut(s) 214, 374
EcoO109I RGGNCCY 2 cut(s) 32, 374
EcoRII CCWGG 1 cut(s) 34
FaiI YATR 3 cut(s) 171, 314, 327
Fnu4HI GCNGC 1 cut(s) 8
FokI GGATG 1 cut(s) 370
Fsp4HI GCNGC 1 cut(s) 8
GlaI GCGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 8
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 2 cut(s) 33, 306
HapII CCGG 1 cut(s) 68
HhaI GCGC 1 cut(s) 7
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 1 cut(s) 207
HpaII CCGG 1 cut(s) 68
HphI GGTGA 1 cut(s) 34
Hpy166II GTNNAC 1 cut(s) 119
Hpy188I TCNGA 4 cut(s) 202, 214, 343, 387
Hpy8I GTNNAC 1 cut(s) 119
Hpy99I CGWCG 1 cut(s) 116
HpyCH4III ACNGT 1 cut(s) 350
HpyCH4V TGCA 2 cut(s) 87, 329
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
HpyF3I CTNAG 2 cut(s) 11, 102
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 1 cut(s) 218
LguI GCTCTTC 1 cut(s) 113
LpnPI CCDG 6 cut(s) 15, 21, 48, 73, 81, 137
LweI GCATC 1 cut(s) 348
MaeIII GTNAC 1 cut(s) 238
MalI GATC 1 cut(s) 220
MbiI CCGCTC 1 cut(s) 20
MboI GATC 1 cut(s) 218
MboII GAAGA 1 cut(s) 100
MfeI CAATTG 1 cut(s) 363
MhlI GDGCHC 1 cut(s) 94
MluCI AATT 1 cut(s) 363
MlyI GAGTC 1 cut(s) 216
MnlI CCTC 7 cut(s) 18, 61, 64, 75, 271, 365, 387
MseI TTAA 1 cut(s) 77
MslI CAYNNNNRTG 1 cut(s) 317
MspA1I CMGCKG 1 cut(s) 399
MspI CCGG 1 cut(s) 68
MspR9I CCNGG 1 cut(s) 36
MunI CAATTG 1 cut(s) 363
Mva1269I GAATGC 1 cut(s) 158
MvaI CCWGG 1 cut(s) 36
MwoI GCNNNNNNNGC 1 cut(s) 269
NdeII GATC 1 cut(s) 218
PciSI GCTCTTC 1 cut(s) 113
PctI GAATGC 1 cut(s) 158
PflFI GACNNNGTC 1 cut(s) 206
PkrI GCNGC 1 cut(s) 9
PleI GAGTC 1 cut(s) 215
PpsI GAGTC 1 cut(s) 215
PpuMI RGGWCCY 1 cut(s) 374
Psp5II RGGWCCY 1 cut(s) 374
Psp6I CCWGG 1 cut(s) 34
PspGI CCWGG 1 cut(s) 34
PspPI GGNCC 3 cut(s) 32, 214, 374
PspPPI RGGWCCY 1 cut(s) 374
PstNI CAGNNNCTG 1 cut(s) 35
PsyI GACNNNGTC 1 cut(s) 206
PvuII CAGCTG 1 cut(s) 399
RseI CAYNNNNRTG 1 cut(s) 317
Rsr2I CGGWCCG 1 cut(s) 214
RsrII CGGWCCG 1 cut(s) 214
SapI GCTCTTC 1 cut(s) 113
SaqAI TTAA 1 cut(s) 77
SatI GCNGC 1 cut(s) 8
Sau3AI GATC 1 cut(s) 218
Sau96I GGNCC 3 cut(s) 32, 214, 374
SchI GAGTC 1 cut(s) 216
ScrFI CCNGG 1 cut(s) 36
SduI GDGCHC 1 cut(s) 94
SetI ASST 5 cut(s) 29, 108, 245, 379, 401
SfaNI GCATC 1 cut(s) 348
SinI GGWCC 2 cut(s) 214, 374
SmiMI CAYNNNNRTG 1 cut(s) 317
Sse9I AATT 1 cut(s) 363
SsiI CCGC 1 cut(s) 20
StyD4I CCNGG 1 cut(s) 34
TaaI ACNGT 1 cut(s) 350
TaqII GACCGA 1 cut(s) 231
TasI AATT 1 cut(s) 363
Tru1I TTAA 1 cut(s) 77
Tru9I TTAA 1 cut(s) 77
TseI GCWGC 1 cut(s) 7
TspDTI ATGAA 2 cut(s) 273, 299
TspGWI ACGGA 1 cut(s) 152
Tth111I GACNNNGTC 1 cut(s) 206
VpaK11BI GGWCC 2 cut(s) 214, 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.