AT5G06750

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011995
Physical Location & Seq
Reverse (-)
2086266 .. 2088997
2732 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G06750.2

Sequence Viewer

Length: 1182 bp
ATGTTCTCCTGGTTAGCGAGAATGGCTCTTTTTTGTTTACGACCTATGCGGCGATACGGTCGTATGAACAGAGATGATGACGATGATGATGATCACGACGGTGACTCTTCTTCCTCCGGTGACTCCCTTCTTTGGTCTAGAGAACTCGAGAGACATTCTTTCGGAGATTTCTCTATTGCTGTTGTGCAAGCTAACGAGGTTATTGAAGATCATAGTCAAGTCGAGACTGGAAACGGTGCCGTTTTCGTCGGAGTTTACGATGGTCATGGTGGTCCTGAAGCTTCTAGATACATCTCTGATCATCTCTTTTCTCATTTGATGAGAGTTTCGAGAGAAAGGAGTTGTATTTCAGAGGAGGCTTTAAGAGCTGCATTTTCTGCTACTGAGGAAGGGTTTCTCACGCTTGTGCGAAGGACTTGCGGGTTGAAACCGTTGATTGCAGCTGTTGGATCTTGTTGTTTGGTTGGAGTTATTTGGAAAGGGACTTTGCTTATCGCTAATGTTGGTGATTCTCGTGCTGTGCTTGGTTCCATGGGTAGTAATAATAATAGGTCAAACAAGATTGTAGCTGAGCAACTGACTAGTGATCACAATGCTGCTTTGGAAGAAGTTAGACAAGAGCTTAGGTCGTTGCATCCTGATGATTCACATATCGTTGTCCTTAAACATGGTGTGTGGCGCATCAAAGGCATCATTCAGGTATCTAGATCAATAGGGGATGCATATTTAAAGCGCCCAGAGTTCTCACTTGACCCTTCATTTCCGCGGTTCCATCTCGCTGAAGAACTACAAAGACCTGTTTTATCAGCAGAGCCTTGTGTCTACACAAGAGTCTTACAAACAAGTGACAAGTTTGTGATATTCGCATCAGATGGACTCTGGGAACAAATGACCAACCAGCAAGCTGTAGAGATAGTGAATAAACACCCCCGTCCTGGAATAGCGAGAAGGCTGGTGAGAAGAGCGATAACCATAGCTGCGAAAAAGAGAGAGATGAATTACGATGATTTGAAGAAAGTGGAGAGAGGAGTGAGGAGATTCTTTCATGATGATATAACAGTGGTTGTGATATTCATAGACAATGAGCTTCTTATGGTGGAGAAAGCTACTGTTCCTGAATTGTCCATTAAAGGTTTTTCTCATACCGTTGGACCTTCCAAGTTCAGTATCTTCCTCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

393

Amino Acids

44.14

Weight (kDa)

6.41

Isoelectric Point (pI)

46.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 37 - 246 6.1e-31 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011995)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06750 AT5G06750 AT5G06750
fragaria_vesca FvH4_6g22310
malus_domestica MD12G1057000.v1.1 MD14G1057600.v1.1
prunus_persica Prupe.7G077100_v2.0.a1
pyrus_communis pycom12g05090 pycom14g04670
rosa_chinensis RchiOBHm_Chr3g0479661
rosa_laevigata RLG00000023549
rosa_multiflora Rmu_sc0003755.1_g000003
rosa_roxburghii Rroxscaffold_6G00402080
rosa_rugosa Rorug03G0177300
rosa_samantha Rh3AG228000 Rh3BG261200 Rh3CG258300 Rh3DG254500
rosa_wichuraiana Rw3G020400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 236
AccI GTMKAC 1 cut(s) 822
AccII CGCG 1 cut(s) 766
AciI CCGC 4 cut(s) 49, 420, 764, 766
AclWI GGATC 1 cut(s) 457
AcuI CTGAAG 2 cut(s) 297, 801
AfiI CCNNNNNNNGG 2 cut(s) 132, 935
AgsI TTSAA 3 cut(s) 206, 427, 1012
AhlI ACTAGT 1 cut(s) 581
AjnI CCWGG 2 cut(s) 8, 934
AleI CACNNNNGTG 2 cut(s) 99, 404
Alw26I GTCTC 2 cut(s) 145, 218
AlwI GGATC 1 cut(s) 457
Ama87I CYCGRG 1 cut(s) 146
ApeKI GCWGC 4 cut(s) 368, 440, 596, 977
Asp700I GAANNNNTTC 1 cut(s) 393
AspLEI GCGC 2 cut(s) 681, 735
AspS9I GGNCC 2 cut(s) 272, 1151
AsuHPI GGTGA 4 cut(s) 113, 131, 518, 967
AvaI CYCGRG 1 cut(s) 146
AvaII GGWCC 2 cut(s) 272, 1151
BaeI ACNNNNGTAYC 2 cut(s) 46, 79
BanI GGYRCC 1 cut(s) 236
BauI CACGAG 1 cut(s) 513
BbvI GCAGC 4 cut(s) 355, 452, 583, 964
BccI CCATC 3 cut(s) 254, 780, 866
BceAI ACGGC 1 cut(s) 224
BcgI CGANNNNNNTGC 2 cut(s) 399, 433
BciT130I CCWGG 2 cut(s) 10, 936
BclI TGATCA 3 cut(s) 91, 298, 586
BcoDI GTCTC 2 cut(s) 145, 218
BcuI ACTAGT 1 cut(s) 581
BfaI CTAG 4 cut(s) 138, 285, 582, 705
BfmI CTRYAG 1 cut(s) 906
BfoI RGCGCY 1 cut(s) 736
BisI GCNGC 5 cut(s) 50, 369, 441, 597, 978
BlpI GCTNAGC 1 cut(s) 570
BlsI GCNGC 5 cut(s) 51, 370, 442, 598, 979
Bme1390I CCNGG 2 cut(s) 10, 936
Bme18I GGWCC 2 cut(s) 272, 1151
BmeT110I CYCGRG 1 cut(s) 146
BmgT120I GGNCC 2 cut(s) 272, 1151
BmiI GGNNCC 3 cut(s) 238, 529, 770
BmrFI CCNGG 2 cut(s) 10, 936
BmsI GCATC 5 cut(s) 643, 690, 699, 709, 875
BplI GAGNNNNNCTC 2 cut(s) 10, 42
Bpu10I CCTNAGC 1 cut(s) 623
Bpu1102I GCTNAGC 1 cut(s) 570
BsaBI GATNNNNATC 1 cut(s) 90
BsaJI CCNNGG 2 cut(s) 531, 764
BsaWI WCCGGW 1 cut(s) 116
Bsc4I CCNNNNNNNGG 2 cut(s) 132, 935
Bse1I ACTGG 1 cut(s) 232
Bse8I GATNNNNATC 1 cut(s) 90
BseBI CCWGG 2 cut(s) 10, 936
BseDI CCNNGG 2 cut(s) 531, 764
BseGI GGATG 2 cut(s) 634, 724
BseJI GATNNNNATC 1 cut(s) 90
BseLI CCNNNNNNNGG 2 cut(s) 132, 935
BseMII CTCAG 2 cut(s) 375, 561
BseNI ACTGG 1 cut(s) 232
BseRI GAGGAG 3 cut(s) 368, 1041, 1048
BseXI GCAGC 4 cut(s) 355, 452, 583, 964
Bsh1236I CGCG 1 cut(s) 766
Bsh1285I CGRYCG 1 cut(s) 61
BshNI GGYRCC 1 cut(s) 236
BsiEI CGRYCG 1 cut(s) 61
BsiHKCI CYCGRG 1 cut(s) 146
BsiSI CCGG 1 cut(s) 117
BslFI GGGAC 1 cut(s) 496
BslI CCNNNNNNNGG 2 cut(s) 132, 935
BsmAI GTCTC 2 cut(s) 145, 218
BsmFI GGGAC 1 cut(s) 496
BsoBI CYCGRG 1 cut(s) 146
Bsp143I GATC 6 cut(s) 91, 208, 298, 449, 586, 707
Bsp1720I GCTNAGC 1 cut(s) 570
Bsp19I CCATGG 1 cut(s) 531
BspACI CCGC 4 cut(s) 49, 420, 764, 766
BspCNI CTCAG 2 cut(s) 376, 562
BspFNI CGCG 1 cut(s) 766
BspHI TCATGA 1 cut(s) 1045
BspLI GGNNCC 3 cut(s) 238, 529, 770
BspPI GGATC 1 cut(s) 457
BspQI GCTCTTC 1 cut(s) 955
BspT107I GGYRCC 1 cut(s) 236
BsrI ACTGG 1 cut(s) 232
BssECI CCNNGG 2 cut(s) 531, 764
BssMI GATC 6 cut(s) 91, 208, 298, 449, 586, 707
BssSI CACGAG 1 cut(s) 513
BssT1I CCWWGG 1 cut(s) 531
Bst2BI CACGAG 1 cut(s) 513
Bst2UI CCWGG 2 cut(s) 10, 936
Bst4CI ACNGT 7 cut(s) 59, 101, 236, 432, 1060, 1111, 1147
Bst6I CTCTTC 2 cut(s) 112, 955
BstAPI GCANNNNNTGC 1 cut(s) 377
BstC8I GCNNGC 2 cut(s) 189, 903
BstDEI CTNAG 4 cut(s) 384, 570, 623, 1179
BstDSI CCRYGG 2 cut(s) 531, 764
BstF5I GGATG 2 cut(s) 634, 724
BstFNI CGCG 1 cut(s) 766
BstH2I RGCGCY 1 cut(s) 736
BstHHI GCGC 2 cut(s) 681, 735
BstKTI GATC 6 cut(s) 94, 211, 301, 452, 589, 710
BstMAI GTCTC 2 cut(s) 145, 218
BstMBI GATC 6 cut(s) 91, 208, 298, 449, 586, 707
BstMCI CGRYCG 1 cut(s) 61
BstMWI GCNNNNNNNGC 4 cut(s) 23, 365, 377, 687
BstNI CCWGG 2 cut(s) 10, 936
BstSCI CCNGG 2 cut(s) 8, 934
BstSFI CTRYAG 1 cut(s) 906
BstUI CGCG 1 cut(s) 766
BstV1I GCAGC 4 cut(s) 355, 452, 583, 964
BstX2I RGATCY 1 cut(s) 449
BstYI RGATCY 1 cut(s) 449
BtgI CCRYGG 2 cut(s) 531, 764
BtsCI GGATG 2 cut(s) 634, 724
BtsIMutI CAGTG 1 cut(s) 1065
Cac8I GCNNGC 2 cut(s) 189, 903
CciI TCATGA 1 cut(s) 1045
CfoI GCGC 2 cut(s) 681, 735
Cfr13I GGNCC 2 cut(s) 272, 1151
Cfr42I CCGCGG 1 cut(s) 767
CviAII CATG 4 cut(s) 266, 532, 668, 1046
DdeI CTNAG 4 cut(s) 384, 570, 623, 1179
DpnI GATC 6 cut(s) 93, 210, 300, 451, 588, 709
DpnII GATC 6 cut(s) 91, 208, 298, 449, 586, 707
DraI TTTAAA 1 cut(s) 729
Eam1104I CTCTTC 2 cut(s) 112, 955
EarI CTCTTC 2 cut(s) 112, 955
Eco130I CCWWGG 1 cut(s) 531
Eco47I GGWCC 2 cut(s) 272, 1151
Eco57I CTGAAG 2 cut(s) 297, 801
Eco88I CYCGRG 1 cut(s) 146
EcoRII CCWGG 2 cut(s) 8, 934
EcoT14I CCWWGG 1 cut(s) 531
EcoT22I ATGCAT 1 cut(s) 724
ErhI CCWWGG 1 cut(s) 531
FaeI CATG 4 cut(s) 269, 535, 671, 1049
FaqI GGGAC 1 cut(s) 496
FatI CATG 4 cut(s) 265, 531, 667, 1045
FauI CCCGC 1 cut(s) 413
FbaI TGATCA 3 cut(s) 91, 298, 586
FblI GTMKAC 1 cut(s) 822
Fnu4HI GCNGC 5 cut(s) 50, 369, 441, 597, 978
FokI GGATG 2 cut(s) 621, 731
Fsp4HI GCNGC 5 cut(s) 50, 369, 441, 597, 978
FspBI CTAG 4 cut(s) 138, 285, 582, 705
GlaI GCGC 2 cut(s) 680, 734
GluI GCNGC 5 cut(s) 50, 369, 441, 597, 978
HaeII RGCGCY 1 cut(s) 736
HapII CCGG 1 cut(s) 117
HhaI GCGC 2 cut(s) 681, 735
Hin1II CATG 4 cut(s) 269, 535, 671, 1049
Hin6I GCGC 2 cut(s) 679, 733
HinP1I GCGC 2 cut(s) 679, 733
HindIII AAGCTT 1 cut(s) 279
HinfI GANTC 7 cut(s) 104, 122, 509, 644, 831, 876, 1038
HpaII CCGG 1 cut(s) 117
HphI GGTGA 4 cut(s) 113, 131, 518, 967
Hpy166II GTNNAC 3 cut(s) 38, 256, 823
Hpy188I TCNGA 5 cut(s) 164, 251, 298, 352, 871
Hpy8I GTNNAC 3 cut(s) 38, 256, 823
Hpy99I CGWCG 2 cut(s) 101, 251
HpyAV CCTTC 6 cut(s) 137, 383, 405, 765, 942, 1164
HpyCH4III ACNGT 7 cut(s) 59, 101, 236, 432, 1060, 1111, 1147
HpyCH4V TGCA 5 cut(s) 187, 371, 440, 634, 722
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 365, 377, 687
HpyF3I CTNAG 4 cut(s) 384, 570, 623, 1179
Hsp92II CATG 4 cut(s) 269, 535, 671, 1049
HspAI GCGC 2 cut(s) 679, 733
Ksp22I TGATCA 3 cut(s) 91, 298, 586
KspI CCGCGG 1 cut(s) 767
Kzo9I GATC 6 cut(s) 91, 208, 298, 449, 586, 707
LguI GCTCTTC 1 cut(s) 955
Lsp1109I GCAGC 4 cut(s) 355, 452, 583, 964
LweI GCATC 5 cut(s) 643, 690, 699, 709, 875
MaeI CTAG 4 cut(s) 138, 285, 582, 705
MaeIII GTNAC 3 cut(s) 101, 119, 845
MalI GATC 6 cut(s) 93, 210, 300, 451, 588, 709
MboI GATC 6 cut(s) 91, 208, 298, 449, 586, 707
MboII GAAGA 8 cut(s) 99, 102, 218, 617, 794, 972, 1024, 1162
MflI RGATCY 1 cut(s) 449
MluCI AATT 2 cut(s) 997, 1118
MlyI GAGTC 4 cut(s) 98, 116, 840, 870
MmeI TCCRAC 4 cut(s) 229, 427, 445, 1129
MnlI CCTC 7 cut(s) 124, 190, 346, 349, 379, 1019, 1026
Mph1103I ATGCAT 1 cut(s) 724
MroXI GAANNNNTTC 1 cut(s) 393
MseI TTAA 4 cut(s) 362, 663, 728, 1128
MslI CAYNNNNRTG 3 cut(s) 99, 404, 639
MspA1I CMGCKG 2 cut(s) 443, 766
MspI CCGG 1 cut(s) 117
MspR9I CCNGG 2 cut(s) 10, 936
MvaI CCWGG 2 cut(s) 10, 936
MvnI CGCG 1 cut(s) 766
MwoI GCNNNNNNNGC 4 cut(s) 23, 365, 377, 687
NcoI CCATGG 1 cut(s) 531
NdeII GATC 6 cut(s) 91, 208, 298, 449, 586, 707
NlaIII CATG 4 cut(s) 269, 535, 671, 1049
NlaIV GGNNCC 3 cut(s) 238, 529, 770
NmuCI GTSAC 3 cut(s) 101, 119, 845
NsiI ATGCAT 1 cut(s) 724
OliI CACNNNNGTG 2 cut(s) 99, 404
PaeR7I CTCGAG 1 cut(s) 146
PagI TCATGA 1 cut(s) 1045
PciSI GCTCTTC 1 cut(s) 955
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PdmI GAANNNNTTC 1 cut(s) 393
PfeI GAWTC 3 cut(s) 509, 644, 1038
PfoI TCCNGGA 1 cut(s) 934
PkrI GCNGC 5 cut(s) 51, 370, 442, 598, 979
PleI GAGTC 4 cut(s) 98, 116, 839, 870
PpsI GAGTC 4 cut(s) 98, 116, 839, 870
Psp6I CCWGG 2 cut(s) 8, 934
PspGI CCWGG 2 cut(s) 8, 934
PspN4I GGNNCC 3 cut(s) 238, 529, 770
PspPI GGNCC 2 cut(s) 272, 1151
PsuI RGATCY 1 cut(s) 449
PvuII CAGCTG 1 cut(s) 443
RseI CAYNNNNRTG 3 cut(s) 99, 404, 639
SacII CCGCGG 1 cut(s) 767
SapI GCTCTTC 1 cut(s) 955
SaqAI TTAA 4 cut(s) 362, 663, 728, 1128
SatI GCNGC 5 cut(s) 50, 369, 441, 597, 978
Sau3AI GATC 6 cut(s) 91, 208, 298, 449, 586, 707
Sau96I GGNCC 2 cut(s) 272, 1151
SchI GAGTC 4 cut(s) 98, 116, 840, 870
ScrFI CCNGG 2 cut(s) 10, 936
SfaNI GCATC 5 cut(s) 643, 690, 699, 709, 875
SfcI CTRYAG 1 cut(s) 906
Sfr274I CTCGAG 1 cut(s) 146
Sfr303I CCGCGG 1 cut(s) 767
SgrBI CCGCGG 1 cut(s) 767
SinI GGWCC 2 cut(s) 272, 1151
SlaI CTCGAG 1 cut(s) 146
SmiMI CAYNNNNRTG 3 cut(s) 99, 404, 639
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
SpeI ACTAGT 1 cut(s) 581
Sse9I AATT 2 cut(s) 997, 1118
SsiI CCGC 4 cut(s) 49, 420, 764, 766
SspMI CTAG 4 cut(s) 138, 285, 582, 705
StyD4I CCNGG 2 cut(s) 8, 934
StyI CCWWGG 1 cut(s) 531
TaaI ACNGT 7 cut(s) 59, 101, 236, 432, 1060, 1111, 1147
TaqI TCGA 3 cut(s) 147, 222, 329
TasI AATT 2 cut(s) 997, 1118
TauI GCSGC 1 cut(s) 52
TfiI GAWTC 3 cut(s) 509, 644, 1038
Tru1I TTAA 4 cut(s) 362, 663, 728, 1128
Tru9I TTAA 4 cut(s) 362, 663, 728, 1128
TscAI CASTG 1 cut(s) 1065
TseFI GTSAC 3 cut(s) 101, 119, 845
TseI GCWGC 4 cut(s) 368, 440, 596, 977
Tsp45I GTSAC 3 cut(s) 101, 119, 845
TspDTI ATGAA 5 cut(s) 80, 747, 1010, 1034, 1063
TspRI CASTG 1 cut(s) 1065
VpaK11BI GGWCC 2 cut(s) 272, 1151
XbaI TCTAGA 3 cut(s) 137, 284, 704
XhoI CTCGAG 1 cut(s) 146
XmiI GTMKAC 1 cut(s) 822
XmnI GAANNNNTTC 1 cut(s) 393
XspI CTAG 4 cut(s) 138, 285, 582, 705
Zsp2I ATGCAT 1 cut(s) 724
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.