FvH4_6g22310

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0011995
Physical Location & Seq
Reverse (-)
15964235 .. 15967653
3419 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g22310.t2

Sequence Viewer

Length: 1152 bp
ATGTTTTCGTGGCTGGCAAGGATCATGTGGACGTGTTGGAAGCCTGTGAGGAGATATGCCCGTATGAACAAGGATGATAACAATCTTGATGACCCCTCCATTGAAGACCCTCTCGTTTGGTGCAGAGCCCTTGACAAGCACGCTTTTGGTGATTTCTCCTTCGCTGTGGTTCAAGCCAATGCGGTTCTTGAGGATCAGAGCCAAGTTGAGATTGGGAGAGAGGCTACTTTTGTTGGTGTCTATGATGGCCATGGTGGACCTGATGCCGCCAGATACATCTCTGACCATCTCTTTCTGCATCTCATGAGACATGCTCAAGAAAAGGGAACCATATCTGAAGATATCCTTAGAAGTGCCTTTTCTGCTACCGAGGATGGGTTCCTTACTCTTGTGCGTAGGACTTGTGGAATAAAACCAGTGATTGCAGCAGAAGGTTCTTGTTGTCTGGTTGGGGTTATCTGGAGAGGGACTTTGTATGTTGCTAATGTAGGTGACTCGAGAGCTGTAATTGGTTCTTTAGGTAGATCAAATAAGATAGTTGCTGAACAACTGAATAGAGAACACAATGCAAGTATGGAGGAGGTCAGACAAGAGCTCAGGGCGCTGCATCCAAATGATTCACACATTGTAGTTATGAAGAAGGGAGTTTGGCGTATCAAAGGCATCATACAGGTGTCTAGATCTATTGGCGATGCGTACTTGAAGAGACCAGAGTTTTCTCTTGATCCTTCATTCCCGAGATTCCAACTTCCTGAACCCCTTGGTCGGCCTGTGCTGTCAGCAGAACCATCTGTATGTACTAGAGTTCTACAACCTGAAGATAGATTTATTATTTTTGCATCAGACGGTCTTTGGGAGCACATGACTAATCAGGAAGCTGTGGAAATCGTGCATAACAGTCCTCGAGAGGGAATTGCGAACAGACTTCTGAAACTATGTATGAGTGAGGCAGGTAGAAAAGTGAATAGGACATATGATGACCTTAAGAAGGTCGAAAAGGGTGAGAGGAGGTGTTATCACGACGATATTACGATTGTTGTCATTTTTATTGATCATGATTCACTGGGGAAAACACAACCTGTACCTGAGCTATCGGTAAGAGGGTTCAATGACACGGTTGCACCATCAAAGTTTAGCGTCTTCAAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

384

Amino Acids

43.22

Weight (kDa)

6.47

Isoelectric Point (pI)

47.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 74 - 299 5.2e-37 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011995)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06750 AT5G06750 AT5G06750
fragaria_vesca FvH4_6g22310
malus_domestica MD12G1057000.v1.1 MD14G1057600.v1.1
prunus_persica Prupe.7G077100_v2.0.a1
pyrus_communis pycom12g05090 pycom14g04670
rosa_chinensis RchiOBHm_Chr3g0479661
rosa_laevigata RLG00000023549
rosa_multiflora Rmu_sc0003755.1_g000003
rosa_roxburghii Rroxscaffold_6G00402080
rosa_rugosa Rorug03G0177300
rosa_samantha Rh3AG228000 Rh3BG261200 Rh3CG258300 Rh3DG254500
rosa_wichuraiana Rw3G020400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 941
AciI CCGC 2 cut(s) 182, 267
AclWI GGATC 3 cut(s) 29, 201, 719
AcoI YGGCCR 1 cut(s) 247
AcuI CTGAAG 2 cut(s) 357, 837
AfaI GTAC 3 cut(s) 698, 799, 1083
AfiI CCNNNNNNNGG 4 cut(s) 375, 765, 908, 988
AflII CTTAAG 1 cut(s) 983
AflIII ACRYGT 1 cut(s) 32
AgsI TTSAA 5 cut(s) 104, 173, 703, 1108, 1144
AjiI CACGTC 1 cut(s) 33
AluBI AGCT 4 cut(s) 503, 595, 878, 1090
AluI AGCT 4 cut(s) 503, 595, 878, 1090
Alw21I GWGCWC 2 cut(s) 597, 861
Alw26I GTCTC 2 cut(s) 301, 700
AlwI GGATC 3 cut(s) 29, 201, 719
Ama87I CYCGRG 3 cut(s) 496, 736, 903
AoxI GGCC 2 cut(s) 247, 767
ApeKI GCWGC 2 cut(s) 425, 604
AspLEI GCGC 1 cut(s) 604
AspS9I GGNCC 1 cut(s) 257
AsuHPI GGTGA 3 cut(s) 161, 503, 1013
AvaI CYCGRG 3 cut(s) 496, 736, 903
AvaII GGWCC 1 cut(s) 257
BalI TGGCCA 1 cut(s) 249
BanII GRGCYC 2 cut(s) 130, 597
BbsI GAAGAC 2 cut(s) 111, 1132
Bbv12I GWGCWC 2 cut(s) 597, 861
BbvI GCAGC 2 cut(s) 437, 591
BccI CCATC 5 cut(s) 239, 294, 368, 796, 1132
BclI TGATCA 1 cut(s) 1051
BcoDI GTCTC 2 cut(s) 301, 700
BfaI CTAG 2 cut(s) 678, 801
BfoI RGCGCY 1 cut(s) 605
BfrI CTTAAG 1 cut(s) 983
BfuAI ACCTGC 1 cut(s) 941
BglII AGATCT 1 cut(s) 680
BisI GCNGC 3 cut(s) 267, 426, 605
BlsI GCNGC 3 cut(s) 268, 427, 606
Bme18I GGWCC 1 cut(s) 257
BmeT110I CYCGRG 3 cut(s) 496, 736, 903
BmgBI CACGTC 1 cut(s) 33
BmgT120I GGNCC 1 cut(s) 257
BmiI GGNNCC 2 cut(s) 328, 380
BmrI ACTGGG 1 cut(s) 1073
BmsI GCATC 6 cut(s) 253, 307, 616, 672, 682, 848
BmuI ACTGGG 1 cut(s) 1073
BpiI GAAGAC 2 cut(s) 111, 1132
BplI GAGNNNNNCTC 2 cut(s) 298, 330
BpmI CTGGAG 1 cut(s) 481
Bpu10I CCTNAGC 2 cut(s) 596, 1086
BpuEI CTTGAG 2 cut(s) 209, 300
BsaBI GATNNNNATC 1 cut(s) 81
BsaI GGTCTC 1 cut(s) 700
BsaJI CCNNGG 3 cut(s) 250, 369, 760
Bsc4I CCNNNNNNNGG 4 cut(s) 375, 765, 908, 988
Bse1I ACTGG 2 cut(s) 416, 1068
Bse8I GATNNNNATC 1 cut(s) 81
BseDI CCNNGG 3 cut(s) 250, 369, 760
BseGI GGATG 3 cut(s) 79, 379, 607
BseJI GATNNNNATC 1 cut(s) 81
BseLI CCNNNNNNNGG 4 cut(s) 375, 765, 908, 988
BseMII CTCAG 2 cut(s) 610, 1077
BseNI ACTGG 2 cut(s) 416, 1068
BseRI GAGGAG 3 cut(s) 64, 593, 1021
BseXI GCAGC 2 cut(s) 437, 591
BsgI GTGCAG 1 cut(s) 142
BshFI GGCC 2 cut(s) 249, 769
BsiHKAI GWGCWC 2 cut(s) 597, 861
BsiHKCI CYCGRG 3 cut(s) 496, 736, 903
BslFI GGGAC 1 cut(s) 481
BslI CCNNNNNNNGG 4 cut(s) 375, 765, 908, 988
BsmAI GTCTC 2 cut(s) 301, 700
BsmFI GGGAC 1 cut(s) 481
BsnI GGCC 2 cut(s) 249, 769
Bso31I GGTCTC 1 cut(s) 700
BsoBI CYCGRG 3 cut(s) 496, 736, 903
Bsp1286I GDGCHC 3 cut(s) 130, 597, 861
Bsp143I GATC 6 cut(s) 21, 193, 524, 680, 724, 1051
Bsp19I CCATGG 1 cut(s) 250
BspACI CCGC 2 cut(s) 182, 267
BspANI GGCC 2 cut(s) 249, 769
BspCNI CTCAG 2 cut(s) 609, 1078
BspHI TCATGA 2 cut(s) 303, 1054
BspLI GGNNCC 2 cut(s) 328, 380
BspMI ACCTGC 1 cut(s) 941
BspPI GGATC 3 cut(s) 29, 201, 719
BspTI CTTAAG 1 cut(s) 983
BspTNI GGTCTC 1 cut(s) 700
BsrI ACTGG 2 cut(s) 416, 1068
BssECI CCNNGG 3 cut(s) 250, 369, 760
BssMI GATC 6 cut(s) 21, 193, 524, 680, 724, 1051
BssT1I CCWWGG 2 cut(s) 250, 760
Bst4CI ACNGT 3 cut(s) 848, 899, 1117
Bst6I CTCTTC 1 cut(s) 698
BstAFI CTTAAG 1 cut(s) 983
BstC8I GCNNGC 2 cut(s) 15, 141
BstDEI CTNAG 3 cut(s) 347, 596, 1086
BstDSI CCRYGG 1 cut(s) 250
BstENI CCTNNNNNAGG 1 cut(s) 986
BstF5I GGATG 3 cut(s) 79, 379, 607
BstH2I RGCGCY 1 cut(s) 605
BstHHI GCGC 1 cut(s) 604
BstKTI GATC 6 cut(s) 24, 196, 527, 683, 727, 1054
BstMAI GTCTC 2 cut(s) 301, 700
BstMBI GATC 6 cut(s) 21, 193, 524, 680, 724, 1051
BstMWI GCNNNNNNNGC 2 cut(s) 362, 601
BstNSI RCATGY 1 cut(s) 314
BstV1I GCAGC 2 cut(s) 437, 591
BstV2I GAAGAC 2 cut(s) 111, 1132
BstX2I RGATCY 1 cut(s) 680
BstYI RGATCY 1 cut(s) 680
BsuRI GGCC 2 cut(s) 249, 769
BtgI CCRYGG 1 cut(s) 250
BtgZI GCGATG 1 cut(s) 705
BtrI CACGTC 1 cut(s) 33
BtsCI GGATG 3 cut(s) 79, 379, 607
BtsIMutI CAGTG 2 cut(s) 423, 1061
BveI ACCTGC 1 cut(s) 941
Cac8I GCNNGC 2 cut(s) 15, 141
CciI TCATGA 2 cut(s) 303, 1054
CfoI GCGC 1 cut(s) 604
Cfr13I GGNCC 1 cut(s) 257
CseI GACGC 1 cut(s) 1126
Csp6I GTAC 3 cut(s) 697, 798, 1082
CviAII CATG 6 cut(s) 25, 251, 304, 311, 862, 1055
CviQI GTAC 3 cut(s) 697, 798, 1082
DdeI CTNAG 3 cut(s) 347, 596, 1086
DpnI GATC 6 cut(s) 23, 195, 526, 682, 726, 1053
DpnII GATC 6 cut(s) 21, 193, 524, 680, 724, 1051
EaeI YGGCCR 1 cut(s) 247
Eam1104I CTCTTC 1 cut(s) 698
EarI CTCTTC 1 cut(s) 698
Ecl136II GAGCTC 1 cut(s) 595
Eco130I CCWWGG 2 cut(s) 250, 760
Eco24I GRGCYC 2 cut(s) 130, 597
Eco31I GGTCTC 1 cut(s) 700
Eco32I GATATC 1 cut(s) 343
Eco47I GGWCC 1 cut(s) 257
Eco53kI GAGCTC 1 cut(s) 595
Eco57I CTGAAG 2 cut(s) 357, 837
Eco88I CYCGRG 3 cut(s) 496, 736, 903
EcoICRI GAGCTC 1 cut(s) 595
EcoNI CCTNNNNNAGG 1 cut(s) 986
EcoRV GATATC 1 cut(s) 343
EcoT14I CCWWGG 2 cut(s) 250, 760
EcoT38I GRGCYC 2 cut(s) 130, 597
ErhI CCWWGG 2 cut(s) 250, 760
FaeI CATG 6 cut(s) 28, 254, 307, 314, 865, 1058
FalI AAGNNNNNCTT 2 cut(s) 330, 362
FaqI GGGAC 1 cut(s) 481
FatI CATG 6 cut(s) 24, 250, 303, 310, 861, 1054
FauNDI CATATG 1 cut(s) 973
FbaI TGATCA 1 cut(s) 1051
Fnu4HI GCNGC 3 cut(s) 267, 426, 605
FokI GGATG 3 cut(s) 86, 386, 594
FriOI GRGCYC 2 cut(s) 130, 597
Fsp4HI GCNGC 3 cut(s) 267, 426, 605
FspBI CTAG 2 cut(s) 678, 801
GlaI GCGC 1 cut(s) 603
GluI GCNGC 3 cut(s) 267, 426, 605
GsuI CTGGAG 1 cut(s) 481
HaeII RGCGCY 1 cut(s) 605
HaeIII GGCC 2 cut(s) 249, 769
HgaI GACGC 1 cut(s) 1126
HhaI GCGC 1 cut(s) 604
Hin1II CATG 6 cut(s) 28, 254, 307, 314, 865, 1058
Hin6I GCGC 1 cut(s) 602
HinP1I GCGC 1 cut(s) 602
HinfI GANTC 4 cut(s) 494, 617, 741, 1058
HphI GGTGA 3 cut(s) 161, 503, 1013
Hpy166II GTNNAC 2 cut(s) 30, 257
Hpy188I TCNGA 6 cut(s) 198, 283, 337, 587, 844, 930
Hpy8I GTNNAC 2 cut(s) 30, 257
Hpy99I CGWCG 1 cut(s) 1025
HpyAV CCTTC 5 cut(s) 169, 425, 634, 738, 982
HpyCH4III ACNGT 3 cut(s) 848, 899, 1117
HpyCH4IV ACGT 1 cut(s) 32
HpyCH4V TGCA 8 cut(s) 123, 298, 425, 569, 607, 839, 892, 1121
HpyF10VI GCNNNNNNNGC 2 cut(s) 362, 601
HpyF3I CTNAG 3 cut(s) 347, 596, 1086
HpySE526I ACGT 1 cut(s) 32
Hsp92II CATG 6 cut(s) 28, 254, 307, 314, 865, 1058
HspAI GCGC 1 cut(s) 602
Ksp22I TGATCA 1 cut(s) 1051
Kzo9I GATC 6 cut(s) 21, 193, 524, 680, 724, 1051
LmnI GCTCC 1 cut(s) 856
Lsp1109I GCAGC 2 cut(s) 437, 591
LweI GCATC 6 cut(s) 253, 307, 616, 672, 682, 848
MaeI CTAG 2 cut(s) 678, 801
MaeII ACGT 1 cut(s) 32
MaeIII GTNAC 1 cut(s) 491
MalI GATC 6 cut(s) 23, 195, 526, 682, 726, 1053
MboI GATC 6 cut(s) 21, 193, 524, 680, 724, 1051
MboII GAAGA 6 cut(s) 116, 350, 649, 715, 830, 1132
MflI RGATCY 1 cut(s) 680
MhlI GDGCHC 3 cut(s) 130, 597, 861
MlsI TGGCCA 1 cut(s) 249
MluCI AATT 2 cut(s) 507, 912
MluNI TGGCCA 1 cut(s) 249
MlyI GAGTC 1 cut(s) 488
MmeI TCCRAC 2 cut(s) 17, 769
Mox20I TGGCCA 1 cut(s) 249
MscI TGGCCA 1 cut(s) 249
MseI TTAA 1 cut(s) 984
MslI CAYNNNNRTG 3 cut(s) 612, 671, 793
Msp20I TGGCCA 1 cut(s) 249
MspCI CTTAAG 1 cut(s) 983
MwoI GCNNNNNNNGC 2 cut(s) 362, 601
NcoI CCATGG 1 cut(s) 250
NdeI CATATG 1 cut(s) 973
NdeII GATC 6 cut(s) 21, 193, 524, 680, 724, 1051
NlaIII CATG 6 cut(s) 28, 254, 307, 314, 865, 1058
NlaIV GGNNCC 2 cut(s) 328, 380
NmuCI GTSAC 1 cut(s) 491
NspI RCATGY 1 cut(s) 314
PaeR7I CTCGAG 2 cut(s) 496, 903
PagI TCATGA 2 cut(s) 303, 1054
PfeI GAWTC 3 cut(s) 617, 741, 1058
PkrI GCNGC 3 cut(s) 268, 427, 606
PleI GAGTC 1 cut(s) 488
PpsI GAGTC 1 cut(s) 488
Psp124BI GAGCTC 1 cut(s) 597
PspN4I GGNNCC 2 cut(s) 328, 380
PspPI GGNCC 1 cut(s) 257
PsuI RGATCY 1 cut(s) 680
RsaI GTAC 3 cut(s) 698, 799, 1083
RsaNI GTAC 3 cut(s) 697, 798, 1082
RseI CAYNNNNRTG 3 cut(s) 612, 671, 793
SacI GAGCTC 1 cut(s) 597
SaqAI TTAA 1 cut(s) 984
SatI GCNGC 3 cut(s) 267, 426, 605
Sau3AI GATC 6 cut(s) 21, 193, 524, 680, 724, 1051
Sau96I GGNCC 1 cut(s) 257
SchI GAGTC 1 cut(s) 488
SduI GDGCHC 3 cut(s) 130, 597, 861
SfaNI GCATC 6 cut(s) 253, 307, 616, 672, 682, 848
Sfr274I CTCGAG 2 cut(s) 496, 903
SinI GGWCC 1 cut(s) 257
SlaI CTCGAG 2 cut(s) 496, 903
SmiMI CAYNNNNRTG 3 cut(s) 612, 671, 793
SmlI CTYRAG 5 cut(s) 188, 315, 496, 903, 983
SmoI CTYRAG 5 cut(s) 188, 315, 496, 903, 983
Sse9I AATT 2 cut(s) 507, 912
SsiI CCGC 2 cut(s) 182, 267
SspMI CTAG 2 cut(s) 678, 801
SstI GAGCTC 1 cut(s) 597
StyI CCWWGG 2 cut(s) 250, 760
TaaI ACNGT 3 cut(s) 848, 899, 1117
TaiI ACGT 1 cut(s) 35
TaqI TCGA 3 cut(s) 497, 904, 993
TasI AATT 2 cut(s) 507, 912
TatI WGTACW 1 cut(s) 797
TauI GCSGC 1 cut(s) 269
TfiI GAWTC 3 cut(s) 617, 741, 1058
Tru1I TTAA 1 cut(s) 984
Tru9I TTAA 1 cut(s) 984
TscAI CASTG 2 cut(s) 423, 1068
TseFI GTSAC 1 cut(s) 491
TseI GCWGC 2 cut(s) 425, 604
Tsp45I GTSAC 1 cut(s) 491
TspDTI ATGAA 3 cut(s) 80, 650, 720
TspRI CASTG 2 cut(s) 423, 1068
Vha464I CTTAAG 1 cut(s) 983
VpaK11BI GGWCC 1 cut(s) 257
XagI CCTNNNNNAGG 1 cut(s) 986
XbaI TCTAGA 1 cut(s) 677
XceI RCATGY 1 cut(s) 314
XcmI CCANNNNNNNNNTGG 1 cut(s) 209
XhoI CTCGAG 2 cut(s) 496, 903
XspI CTAG 2 cut(s) 678, 801
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.