Prupe.7G077100_v2.0.a1

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0011995
Physical Location & Seq
Forward (+)
11365475 .. 11369107
3633 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G077100.1

Sequence Viewer

Length: 1146 bp
ATGTTTTCGTGGCTGGCAAGGATAGCGTGGACGTGTTGGAAGCCAGTGAGGAGATATGCCCGTATGAGCAAGGATGATCTTGATGACTCATCTCTTGAAGATCCCTTGTTATGGTGCAGAAGCCTTGACAAGCACTCCTATGGTGAATTCTCCTTCGCTGTGGTCCAGGCCAATGAAGTTCTTGAGGATCAGAGCCAAGTTGAGACTGGCCGTGATGCCACCTTTGTTGGTGTTTATGATGGGCATGGTGGACCTGACGCGTCTCGCTTCATTTCTGACCATCTCTTTCTTCATCTTATGAGACATGCTCGAGAAAAAGGAGCCCTATCTGAAGATATCCTTAGAAGTGCCTTTTCTGCCACTGAGGATGGGTTCCTTACTCTTGTGCGTAGGACTTGTGGAATAAAACCATTAATGGCAGCAATTGGGTCTTGTTGTCTGGTTGGTGTTATCTGGAGAGGGACGTTGTATGTTGCTAATCTAGGAGATTCAAGAGCAGTAATTGGTTCTTTAGGTAGATCGAATAAGATTGTTGGTGAGCAGCTAAATAAGGAGCACAATGCAAGTTTGGAGGAGGTTAGACAAGAACTCAGGTCCTTGCATCCAAATGATTCACATATTGTAGTTATGAAGCATGGAGTTTGGCGTATCAAAGGCATCATACAGGTATCTAGATCTATCGGTGATGCATACTTAAAGAGGCCAGAATTTTCTCTTGATCCTACATTTCCGAGGTTCCACCTTCCTGAACCCCTCGGTCGGCCTGTGCTTACCGCAGAACCATCTGTATGTACCAGAGTTGTACAACCCAATGATAAGTTTATAATATTTGCATCCGATGGACTATGGGAGCACATGACAAATCAGGAAGCTGTGGAGATTGTACATAATAATCCTCGAGCAGGAATTGCAAAAAGACTTCTTAAAACAGCTCTGAGCGAGGCAGCTAGGAAACGGGAGATGAGATATGATGACCTTAAGAAGGTTGAAAAGGGAGTTAGGCGGTTCTTTCACGATGATATTACGATTGTCGTCATTTTTATAGATCATGATTTGCTGGAGAAAAAACAGCCAGCACCTGAGCTGTCAGTAAAAGGGTTCATTGACACTGTTGGGCCATCAAGTTTTAACATTTTCAAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

382

Amino Acids

43.06

Weight (kDa)

7.24

Isoelectric Point (pI)

47.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011995)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06750 AT5G06750 AT5G06750
fragaria_vesca FvH4_6g22310
malus_domestica MD12G1057000.v1.1 MD14G1057600.v1.1
prunus_persica Prupe.7G077100_v2.0.a1
pyrus_communis pycom12g05090 pycom14g04670
rosa_chinensis RchiOBHm_Chr3g0479661
rosa_laevigata RLG00000023549
rosa_multiflora Rmu_sc0003755.1_g000003
rosa_roxburghii Rroxscaffold_6G00402080
rosa_rugosa Rorug03G0177300
rosa_samantha Rh3AG228000 Rh3BG261200 Rh3CG258300 Rh3DG254500
rosa_wichuraiana Rw3G020400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 824
AccII CGCG 1 cut(s) 260
AciI CCGC 2 cut(s) 774, 1003
AclWI GGATC 3 cut(s) 95, 195, 713
AcoI YGGCCR 1 cut(s) 208
AcsI RAATTY 2 cut(s) 146, 707
AcuI CTGAAG 1 cut(s) 351
AfaI GTAC 3 cut(s) 793, 804, 885
AfiI CCNNNNNNNGG 4 cut(s) 111, 759, 902, 982
AflII CTTAAG 1 cut(s) 977
AflIII ACRYGT 2 cut(s) 32, 258
AgsI TTSAA 4 cut(s) 98, 492, 989, 1138
AjiI CACGTC 1 cut(s) 33
AjnI CCWGG 1 cut(s) 165
AluBI AGCT 5 cut(s) 544, 872, 932, 947, 1084
AluI AGCT 5 cut(s) 544, 872, 932, 947, 1084
Alw21I GWGCWC 2 cut(s) 558, 855
Alw26I GTCTC 3 cut(s) 197, 267, 295
AlwI GGATC 3 cut(s) 95, 195, 713
AlwNI CAGNNNCTG 1 cut(s) 1079
Ama87I CYCGRG 2 cut(s) 309, 897
AoxI GGCC 5 cut(s) 168, 208, 701, 761, 1115
ApeKI GCWGC 3 cut(s) 419, 541, 944
ApoI RAATTY 2 cut(s) 146, 707
AseI ATTAAT 1 cut(s) 413
AspS9I GGNCC 4 cut(s) 163, 251, 594, 1115
AsuHPI GGTGA 3 cut(s) 155, 548, 695
AvaI CYCGRG 2 cut(s) 309, 897
AvaII GGWCC 3 cut(s) 163, 251, 594
BanII GRGCYC 1 cut(s) 325
Bbv12I GWGCWC 2 cut(s) 558, 855
BbvI GCAGC 3 cut(s) 431, 553, 956
BccI CCATC 6 cut(s) 233, 288, 362, 790, 833, 1126
BceAI ACGGC 1 cut(s) 195
BciT130I CCWGG 1 cut(s) 167
BcoDI GTCTC 3 cut(s) 197, 267, 295
BfaI CTAG 3 cut(s) 482, 672, 948
BfrI CTTAAG 1 cut(s) 977
BglII AGATCT 1 cut(s) 674
BisI GCNGC 3 cut(s) 420, 542, 945
BlsI GCNGC 3 cut(s) 421, 543, 946
Bme1390I CCNGG 1 cut(s) 167
Bme18I GGWCC 3 cut(s) 163, 251, 594
BmeT110I CYCGRG 2 cut(s) 309, 897
BmgBI CACGTC 1 cut(s) 33
BmgT120I GGNCC 4 cut(s) 163, 251, 594, 1115
BmiI GGNNCC 3 cut(s) 322, 374, 737
BmrFI CCNGG 1 cut(s) 167
BmsI GCATC 5 cut(s) 205, 610, 666, 676, 842
BplI GAGNNNNNCTC 2 cut(s) 292, 324
BpmI CTGGAG 2 cut(s) 475, 1079
Bpu10I CCTNAGC 1 cut(s) 1080
BpuEI CTTGAG 1 cut(s) 203
BsaJI CCNNGG 2 cut(s) 731, 754
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bsc4I CCNNNNNNNGG 4 cut(s) 111, 759, 902, 982
Bse1I ACTGG 2 cut(s) 44, 211
BseBI CCWGG 1 cut(s) 167
BseDI CCNNGG 2 cut(s) 731, 754
BseGI GGATG 4 cut(s) 79, 373, 601, 833
BseLI CCNNNNNNNGG 4 cut(s) 111, 759, 902, 982
BseMII CTCAG 4 cut(s) 354, 604, 926, 1071
BseNI ACTGG 2 cut(s) 44, 211
BseRI GAGGAG 2 cut(s) 64, 587
BseXI GCAGC 3 cut(s) 431, 553, 956
BsgI GTGCAG 1 cut(s) 136
Bsh1236I CGCG 1 cut(s) 260
Bsh1285I CGRYCG 1 cut(s) 760
BshFI GGCC 5 cut(s) 170, 210, 703, 763, 1117
BsiEI CGRYCG 1 cut(s) 760
BsiHKAI GWGCWC 2 cut(s) 558, 855
BsiHKCI CYCGRG 2 cut(s) 309, 897
BslFI GGGAC 1 cut(s) 475
BslI CCNNNNNNNGG 4 cut(s) 111, 759, 902, 982
BsmAI GTCTC 3 cut(s) 197, 267, 295
BsmBI CGTCTC 1 cut(s) 267
BsmFI GGGAC 1 cut(s) 475
BsnI GGCC 5 cut(s) 170, 210, 703, 763, 1117
BsoBI CYCGRG 2 cut(s) 309, 897
Bsp1286I GDGCHC 3 cut(s) 325, 558, 855
Bsp1407I TGTACA 2 cut(s) 802, 883
Bsp143I GATC 7 cut(s) 76, 100, 187, 518, 674, 718, 1045
BspACI CCGC 2 cut(s) 774, 1003
BspANI GGCC 5 cut(s) 170, 210, 703, 763, 1117
BspCNI CTCAG 4 cut(s) 355, 603, 927, 1072
BspFNI CGCG 1 cut(s) 260
BspHI TCATGA 1 cut(s) 1048
BspLI GGNNCC 3 cut(s) 322, 374, 737
BspPI GGATC 3 cut(s) 95, 195, 713
BspTI CTTAAG 1 cut(s) 977
BsrGI TGTACA 2 cut(s) 802, 883
BsrI ACTGG 2 cut(s) 44, 211
BssECI CCNNGG 2 cut(s) 731, 754
BssMI GATC 7 cut(s) 76, 100, 187, 518, 674, 718, 1045
Bst2UI CCWGG 1 cut(s) 167
Bst4CI ACNGT 1 cut(s) 1111
BstAFI CTTAAG 1 cut(s) 977
BstAPI GCANNNNNTGC 1 cut(s) 908
BstAUI TGTACA 2 cut(s) 802, 883
BstC8I GCNNGC 2 cut(s) 15, 1074
BstDEI CTNAG 5 cut(s) 341, 363, 590, 935, 1080
BstENI CCTNNNNNAGG 2 cut(s) 900, 980
BstF5I GGATG 4 cut(s) 79, 373, 601, 833
BstFNI CGCG 1 cut(s) 260
BstKTI GATC 7 cut(s) 79, 103, 190, 521, 677, 721, 1048
BstMAI GTCTC 3 cut(s) 197, 267, 295
BstMBI GATC 7 cut(s) 76, 100, 187, 518, 674, 718, 1045
BstMCI CGRYCG 1 cut(s) 760
BstMWI GCNNNNNNNGC 3 cut(s) 23, 356, 908
BstNI CCWGG 1 cut(s) 167
BstNSI RCATGY 1 cut(s) 308
BstSCI CCNGG 1 cut(s) 165
BstUI CGCG 1 cut(s) 260
BstV1I GCAGC 3 cut(s) 431, 553, 956
BstX2I RGATCY 2 cut(s) 100, 674
BstYI RGATCY 2 cut(s) 100, 674
BsuRI GGCC 5 cut(s) 170, 210, 703, 763, 1117
BtrI CACGTC 1 cut(s) 33
BtsCI GGATG 4 cut(s) 79, 373, 601, 833
BtsIMutI CAGTG 3 cut(s) 51, 360, 1107
Cac8I GCNNGC 2 cut(s) 15, 1074
CaiI CAGNNNCTG 1 cut(s) 1079
CciI TCATGA 1 cut(s) 1048
Cfr13I GGNCC 4 cut(s) 163, 251, 594, 1115
CseI GACGC 2 cut(s) 249, 266
Csp6I GTAC 3 cut(s) 792, 803, 884
CspCI CAANNNNNGTGG 2 cut(s) 208, 243
CviAII CATG 5 cut(s) 245, 305, 635, 856, 1049
CviQI GTAC 3 cut(s) 792, 803, 884
DdeI CTNAG 5 cut(s) 341, 363, 590, 935, 1080
DpnI GATC 7 cut(s) 78, 102, 189, 520, 676, 720, 1047
DpnII GATC 7 cut(s) 76, 100, 187, 518, 674, 718, 1045
EaeI YGGCCR 1 cut(s) 208
Eco24I GRGCYC 1 cut(s) 325
Eco32I GATATC 1 cut(s) 337
Eco47I GGWCC 3 cut(s) 163, 251, 594
Eco57I CTGAAG 1 cut(s) 351
Eco88I CYCGRG 2 cut(s) 309, 897
EcoNI CCTNNNNNAGG 2 cut(s) 900, 980
EcoO109I RGGNCCY 1 cut(s) 594
EcoRI GAATTC 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 165
EcoRV GATATC 1 cut(s) 337
EcoT22I ATGCAT 1 cut(s) 691
EcoT38I GRGCYC 1 cut(s) 325
Esp3I CGTCTC 1 cut(s) 267
FaeI CATG 5 cut(s) 248, 308, 638, 859, 1052
FalI AAGNNNNNCTT 2 cut(s) 324, 356
FaqI GGGAC 1 cut(s) 475
FatI CATG 5 cut(s) 244, 304, 634, 855, 1048
Fnu4HI GCNGC 3 cut(s) 420, 542, 945
FokI GGATG 4 cut(s) 86, 380, 588, 820
FriOI GRGCYC 1 cut(s) 325
Fsp4HI GCNGC 3 cut(s) 420, 542, 945
FspBI CTAG 3 cut(s) 482, 672, 948
GluI GCNGC 3 cut(s) 420, 542, 945
GsuI CTGGAG 2 cut(s) 475, 1079
HaeIII GGCC 5 cut(s) 170, 210, 703, 763, 1117
HgaI GACGC 2 cut(s) 249, 266
Hin1II CATG 5 cut(s) 248, 308, 638, 859, 1052
HinfI GANTC 3 cut(s) 86, 488, 611
HphI GGTGA 3 cut(s) 155, 548, 695
Hpy166II GTNNAC 2 cut(s) 30, 251
Hpy188I TCNGA 6 cut(s) 192, 277, 331, 732, 838, 936
Hpy8I GTNNAC 2 cut(s) 30, 251
HpyAV CCTTC 3 cut(s) 163, 752, 976
HpyCH4III ACNGT 1 cut(s) 1111
HpyCH4IV ACGT 2 cut(s) 32, 464
HpyCH4V TGCA 6 cut(s) 117, 563, 601, 689, 833, 911
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 356, 908
HpyF3I CTNAG 5 cut(s) 341, 363, 590, 935, 1080
HpySE526I ACGT 2 cut(s) 32, 464
Hsp92II CATG 5 cut(s) 248, 308, 638, 859, 1052
Kzo9I GATC 7 cut(s) 76, 100, 187, 518, 674, 718, 1045
LmnI GCTCC 3 cut(s) 320, 553, 850
Lsp1109I GCAGC 3 cut(s) 431, 553, 956
LweI GCATC 5 cut(s) 205, 610, 666, 676, 842
MaeI CTAG 3 cut(s) 482, 672, 948
MaeII ACGT 2 cut(s) 32, 464
MalI GATC 7 cut(s) 78, 102, 189, 520, 676, 720, 1047
MboI GATC 7 cut(s) 76, 100, 187, 518, 674, 718, 1045
MboII GAAGA 3 cut(s) 110, 281, 344
MfeI CAATTG 1 cut(s) 423
MflI RGATCY 2 cut(s) 100, 674
MhlI GDGCHC 3 cut(s) 325, 558, 855
MluCI AATT 5 cut(s) 146, 423, 501, 707, 906
MluI ACGCGT 1 cut(s) 258
MlyI GAGTC 1 cut(s) 80
MmeI TCCRAC 1 cut(s) 17
Mph1103I ATGCAT 1 cut(s) 691
MseI TTAA 5 cut(s) 413, 695, 924, 978, 1128
MslI CAYNNNNRTG 3 cut(s) 138, 606, 787
MspCI CTTAAG 1 cut(s) 977
MspR9I CCNGG 1 cut(s) 167
MunI CAATTG 1 cut(s) 423
MvaI CCWGG 1 cut(s) 167
MvnI CGCG 1 cut(s) 260
MwoI GCNNNNNNNGC 3 cut(s) 23, 356, 908
NdeII GATC 7 cut(s) 76, 100, 187, 518, 674, 718, 1045
NlaIII CATG 5 cut(s) 248, 308, 638, 859, 1052
NlaIV GGNNCC 3 cut(s) 322, 374, 737
NsiI ATGCAT 1 cut(s) 691
NspI RCATGY 1 cut(s) 308
PaeR7I CTCGAG 2 cut(s) 309, 897
PagI TCATGA 1 cut(s) 1048
PfeI GAWTC 2 cut(s) 488, 611
PkrI GCNGC 3 cut(s) 421, 543, 946
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
PpuMI RGGWCCY 1 cut(s) 594
PshBI ATTAAT 1 cut(s) 413
PsiI TTATAA 1 cut(s) 824
Psp5II RGGWCCY 1 cut(s) 594
Psp6I CCWGG 1 cut(s) 165
PspGI CCWGG 1 cut(s) 165
PspN4I GGNNCC 3 cut(s) 322, 374, 737
PspPI GGNCC 4 cut(s) 163, 251, 594, 1115
PspPPI RGGWCCY 1 cut(s) 594
PspXI VCTCGAGB 1 cut(s) 897
PstNI CAGNNNCTG 1 cut(s) 1079
PsuI RGATCY 2 cut(s) 100, 674
RsaI GTAC 3 cut(s) 793, 804, 885
RsaNI GTAC 3 cut(s) 792, 803, 884
RseI CAYNNNNRTG 3 cut(s) 138, 606, 787
SaqAI TTAA 5 cut(s) 413, 695, 924, 978, 1128
SatI GCNGC 3 cut(s) 420, 542, 945
Sau3AI GATC 7 cut(s) 76, 100, 187, 518, 674, 718, 1045
Sau96I GGNCC 4 cut(s) 163, 251, 594, 1115
SchI GAGTC 1 cut(s) 80
ScrFI CCNGG 1 cut(s) 167
SduI GDGCHC 3 cut(s) 325, 558, 855
SfaNI GCATC 5 cut(s) 205, 610, 666, 676, 842
Sfr274I CTCGAG 2 cut(s) 309, 897
SinI GGWCC 3 cut(s) 163, 251, 594
SlaI CTCGAG 2 cut(s) 309, 897
SmiMI CAYNNNNRTG 3 cut(s) 138, 606, 787
SmlI CTYRAG 4 cut(s) 182, 309, 897, 977
SmoI CTYRAG 4 cut(s) 182, 309, 897, 977
Sse9I AATT 5 cut(s) 146, 423, 501, 707, 906
SsiI CCGC 2 cut(s) 774, 1003
SspI AATATT 1 cut(s) 828
SspMI CTAG 3 cut(s) 482, 672, 948
StyD4I CCNGG 1 cut(s) 165
TaaI ACNGT 1 cut(s) 1111
TaiI ACGT 2 cut(s) 35, 467
TaqI TCGA 3 cut(s) 310, 521, 898
TaqII GACCGA 1 cut(s) 746
TasI AATT 5 cut(s) 146, 423, 501, 707, 906
TatI WGTACW 2 cut(s) 802, 883
TfiI GAWTC 2 cut(s) 488, 611
Tru1I TTAA 5 cut(s) 413, 695, 924, 978, 1128
Tru9I TTAA 5 cut(s) 413, 695, 924, 978, 1128
TscAI CASTG 3 cut(s) 51, 367, 1114
TseI GCWGC 3 cut(s) 419, 541, 944
TspDTI ATGAA 5 cut(s) 189, 259, 281, 644, 1090
TspRI CASTG 3 cut(s) 51, 367, 1114
Vha464I CTTAAG 1 cut(s) 977
VpaK11BI GGWCC 3 cut(s) 163, 251, 594
VspI ATTAAT 1 cut(s) 413
XagI CCTNNNNNAGG 2 cut(s) 900, 980
XapI RAATTY 2 cut(s) 146, 707
XbaI TCTAGA 1 cut(s) 671
XceI RCATGY 1 cut(s) 308
XcmI CCANNNNNNNNNTGG 1 cut(s) 203
XhoI CTCGAG 2 cut(s) 309, 897
XspI CTAG 3 cut(s) 482, 672, 948
Zsp2I ATGCAT 1 cut(s) 691
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.