Rorug03G0177300

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0011995
Physical Location & Seq
Forward (+)
15068345 .. 15069370
1026 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0177300.1

Sequence Viewer

Length: 1026 bp
ATGGCAATTTCTTGTTTCATGATGAGCCTAGAAGACCTTGATGTCGGTGTTGTGAAGACCTTCCACCCCACTGATTCTGATTTAGTGGGAAGCTATCTCTACAACAGAATCAAATCCCCAGCCCCAATTGGAGGAAAACAAACATTCCCTGAGATTGAAATATATGGCACCACAGGTTTACCACCATGGGATATTTGGAGAATTTATGAGCCTTCCAAATTTCCACATCAAGATTATATCTATTTCTTCTCCCGGGTCAAGAAGTTGGGTTCCCGCTGTTCTCGCAGAATTGGCTGCGATGGGGGCACATGGAGCGAGACGGAAGCCGCTAAACCTGTCTATGTCAGTGGAATTGAAGAGCCTTATGGGAAACTAAGGAAGTTTAGATACGAGAACAACAAAGACAAGGGCTTTGAACACCATGCTGCTTGGTTGATGGATGAGTACACCATCAACCAAGCACCCGATCTGGCTTTGTGCCGACTCAAAGTCAATGATAAAGGAGCTGGAGGAAGAAAAAAGAGGAAGAAGAGTTCTGATAAGACTAATGAGGATGAGAATCACAGAAAGACAAAGAGAGTTCAAGTTCAAAACAACATGTGTGAGCAACAAAAGGGAAGTGCCTCATTTAGTAGCACACAGCAACTGCCCCCACAATGTGATGATCATGATTACTGTATGGATGAGAACCTAGTGTTCTCTCCAACTGGCTTGGTTGATGATTATCATGACATTTTCAATAGTGATGAGTTTTTGGCTTCTCTTGATCAATGGTATGAGGAACAACTTTCGGATTCTTCACTACTAGTGCCGCAACAACAAGTAGAACCTAACAACAGTTGCGAGGAACAACAACACCAACAAGATGAGCAGAAACTGCTGCCTTCTCCCTCTCTTGTTCACGAGCAGCAGCTCTCTAGTGGTTTTGATCTGATGGTTTGTGGTTATGATATTCCACTCGATACTCCCTACTTGCAGTCTGACGAATTTTATGGATTTGATCAAGATCAACCTAAAGCACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

341

Amino Acids

39.11

Weight (kDa)

4.92

Isoelectric Point (pI)

55.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 20 - 150 1.6e-16 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011995)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06750 AT5G06750 AT5G06750
fragaria_vesca FvH4_6g22310
malus_domestica MD12G1057000.v1.1 MD14G1057600.v1.1
prunus_persica Prupe.7G077100_v2.0.a1
pyrus_communis pycom12g05090 pycom14g04670
rosa_chinensis RchiOBHm_Chr3g0479661
rosa_laevigata RLG00000023549
rosa_multiflora Rmu_sc0003755.1_g000003
rosa_roxburghii Rroxscaffold_6G00402080
rosa_rugosa Rorug03G0177300
rosa_samantha Rh3AG228000 Rh3BG261200 Rh3CG258300 Rh3DG254500
rosa_wichuraiana Rw3G020400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 41
AccB1I GGYRCC 1 cut(s) 167
AciI CCGC 3 cut(s) 274, 327, 812
AcsI RAATTY 3 cut(s) 201, 218, 986
AdeI CACNNNGTG 1 cut(s) 659
AfaI GTAC 1 cut(s) 446
AfiI CCNNNNNNNGG 1 cut(s) 131
AflIII ACRYGT 1 cut(s) 597
AgsI TTSAA 6 cut(s) 158, 356, 416, 584, 590, 739
AhdI GACNNNNNGTC 1 cut(s) 488
AhlI ACTAGT 1 cut(s) 805
AloI GAACNNNNNNTCC 2 cut(s) 517, 549
AluBI AGCT 3 cut(s) 93, 506, 913
AluI AGCT 3 cut(s) 93, 506, 913
Alw26I GTCTC 1 cut(s) 311
AlwNI CAGNNNCTG 2 cut(s) 646, 877
Ama87I CYCGRG 1 cut(s) 252
ApeKI GCWGC 5 cut(s) 294, 425, 880, 907, 910
ApoI RAATTY 3 cut(s) 201, 218, 986
ArsI GACNNNNNNTTYG 2 cut(s) 395, 427
Asp700I GAANNNNTTC 1 cut(s) 59
AsuC2I CCSGG 2 cut(s) 253, 254
AvaI CYCGRG 1 cut(s) 252
BaeGI GKGCMC 1 cut(s) 308
BanI GGYRCC 1 cut(s) 167
BarI GAAGNNNNNNTAC 2 cut(s) 371, 403
BauI CACGAG 1 cut(s) 902
BbsI GAAGAC 2 cut(s) 39, 62
BbvI GCAGC 5 cut(s) 281, 412, 867, 919, 922
BccI CCATC 4 cut(s) 293, 430, 458, 928
BclI TGATCA 3 cut(s) 664, 766, 1000
BcnI CCSGG 2 cut(s) 253, 254
BcoDI GTCTC 1 cut(s) 311
BcuI ACTAGT 1 cut(s) 805
BfaI CTAG 4 cut(s) 29, 692, 806, 918
BisI GCNGC 7 cut(s) 295, 327, 426, 812, 881, 908, 911
BlsI GCNGC 7 cut(s) 296, 328, 427, 813, 882, 909, 912
Bme1390I CCNGG 2 cut(s) 253, 254
BmeRI GACNNNNNGTC 1 cut(s) 488
BmeT110I CYCGRG 1 cut(s) 252
BmiI GGNNCC 2 cut(s) 169, 271
BmrFI CCNGG 2 cut(s) 253, 254
BpiI GAAGAC 2 cut(s) 39, 62
BpmI CTGGAG 1 cut(s) 528
BpuMI CCSGG 2 cut(s) 253, 254
BsaBI GATNNNNATC 3 cut(s) 558, 723, 1005
BsaJI CCNNGG 2 cut(s) 185, 252
Bsc4I CCNNNNNNNGG 1 cut(s) 131
Bse1I ACTGG 1 cut(s) 712
Bse8I GATNNNNATC 3 cut(s) 558, 723, 1005
BseDI CCNNGG 2 cut(s) 185, 252
BseGI GGATG 3 cut(s) 445, 559, 688
BseJI GATNNNNATC 3 cut(s) 558, 723, 1005
BseLI CCNNNNNNNGG 1 cut(s) 131
BseMII CTCAG 1 cut(s) 141
BseNI ACTGG 1 cut(s) 712
BseSI GKGCMC 1 cut(s) 308
BseXI GCAGC 5 cut(s) 281, 412, 867, 919, 922
BseYI CCCAGC 1 cut(s) 118
BshNI GGYRCC 1 cut(s) 167
BsiHKCI CYCGRG 1 cut(s) 252
BsiSI CCGG 1 cut(s) 253
BslI CCNNNNNNNGG 1 cut(s) 131
BsmAI GTCTC 1 cut(s) 311
BsmBI CGTCTC 1 cut(s) 311
BsoBI CYCGRG 1 cut(s) 252
Bsp1286I GDGCHC 1 cut(s) 308
Bsp143I GATC 6 cut(s) 466, 664, 766, 928, 1000, 1006
Bsp19I CCATGG 1 cut(s) 185
BspACI CCGC 3 cut(s) 274, 327, 812
BspCNI CTCAG 1 cut(s) 142
BspHI TCATGA 3 cut(s) 18, 667, 727
BspLI GGNNCC 2 cut(s) 169, 271
BspQI GCTCTTC 1 cut(s) 351
BspT107I GGYRCC 1 cut(s) 167
BsrI ACTGG 1 cut(s) 712
BssECI CCNNGG 2 cut(s) 185, 252
BssMI GATC 6 cut(s) 466, 664, 766, 928, 1000, 1006
BssSI CACGAG 1 cut(s) 902
BssT1I CCWWGG 1 cut(s) 185
Bst2BI CACGAG 1 cut(s) 902
Bst4CI ACNGT 3 cut(s) 677, 839, 1023
Bst6I CTCTTC 2 cut(s) 351, 524
BstAPI GCANNNNNTGC 1 cut(s) 877
BstDEI CTNAG 2 cut(s) 150, 374
BstDSI CCRYGG 1 cut(s) 185
BstF5I GGATG 3 cut(s) 445, 559, 688
BstKTI GATC 6 cut(s) 469, 667, 769, 931, 1003, 1009
BstMAI GTCTC 1 cut(s) 311
BstMBI GATC 6 cut(s) 466, 664, 766, 928, 1000, 1006
BstMWI GCNNNNNNNGC 5 cut(s) 282, 291, 303, 312, 877
BstNSI RCATGY 1 cut(s) 601
BstSCI CCNGG 2 cut(s) 251, 252
BstSLI GKGCMC 1 cut(s) 308
BstV1I GCAGC 5 cut(s) 281, 412, 867, 919, 922
BstV2I GAAGAC 2 cut(s) 39, 62
BtgI CCRYGG 1 cut(s) 185
BtgZI GCGATG 1 cut(s) 312
BtsCI GGATG 3 cut(s) 445, 559, 688
BtsIMutI CAGTG 3 cut(s) 69, 352, 1019
CaiI CAGNNNCTG 2 cut(s) 646, 877
CciI TCATGA 3 cut(s) 18, 667, 727
Cfr9I CCCGGG 1 cut(s) 252
Csp6I GTAC 1 cut(s) 445
CviAII CATG 7 cut(s) 19, 186, 309, 422, 598, 668, 728
CviQI GTAC 1 cut(s) 445
DdeI CTNAG 2 cut(s) 150, 374
DpnI GATC 6 cut(s) 468, 666, 768, 930, 1002, 1008
DpnII GATC 6 cut(s) 466, 664, 766, 928, 1000, 1006
DraIII CACNNNGTG 1 cut(s) 659
DrdI GACNNNNNNGTC 1 cut(s) 41
DriI GACNNNNNGTC 1 cut(s) 488
DseDI GACNNNNNNGTC 1 cut(s) 41
Eam1104I CTCTTC 2 cut(s) 351, 524
Eam1105I GACNNNNNGTC 1 cut(s) 488
EarI CTCTTC 2 cut(s) 351, 524
Eco130I CCWWGG 1 cut(s) 185
Eco88I CYCGRG 1 cut(s) 252
EcoT14I CCWWGG 1 cut(s) 185
ErhI CCWWGG 1 cut(s) 185
Esp3I CGTCTC 1 cut(s) 311
FaeI CATG 7 cut(s) 22, 189, 312, 425, 601, 671, 731
FatI CATG 7 cut(s) 18, 185, 308, 421, 597, 667, 727
FauI CCCGC 1 cut(s) 281
FbaI TGATCA 3 cut(s) 664, 766, 1000
Fnu4HI GCNGC 7 cut(s) 295, 327, 426, 812, 881, 908, 911
FokI GGATG 3 cut(s) 452, 566, 695
Fsp4HI GCNGC 7 cut(s) 295, 327, 426, 812, 881, 908, 911
FspBI CTAG 4 cut(s) 29, 692, 806, 918
GluI GCNGC 7 cut(s) 295, 327, 426, 812, 881, 908, 911
GsaI CCCAGC 1 cut(s) 122
GsuI CTGGAG 1 cut(s) 528
HapII CCGG 1 cut(s) 253
Hin1II CATG 7 cut(s) 22, 189, 312, 425, 601, 671, 731
HinfI GANTC 5 cut(s) 74, 108, 483, 559, 794
HpaII CCGG 1 cut(s) 253
Hpy166II GTNNAC 3 cut(s) 179, 447, 901
Hpy188I TCNGA 5 cut(s) 79, 538, 793, 933, 982
Hpy188III TCNNGA 8 cut(s) 19, 230, 259, 668, 728, 764, 902, 1004
Hpy8I GTNNAC 3 cut(s) 179, 447, 901
HpyAV CCTTC 3 cut(s) 70, 222, 894
HpyCH4III ACNGT 3 cut(s) 677, 839, 1023
HpyCH4V TGCA 1 cut(s) 976
HpyF10VI GCNNNNNNNGC 5 cut(s) 282, 291, 303, 312, 877
HpyF3I CTNAG 2 cut(s) 150, 374
Hsp92II CATG 7 cut(s) 22, 189, 312, 425, 601, 671, 731
Ksp22I TGATCA 3 cut(s) 664, 766, 1000
Kzo9I GATC 6 cut(s) 466, 664, 766, 928, 1000, 1006
LguI GCTCTTC 1 cut(s) 351
LmnI GCTCC 2 cut(s) 312, 503
LpnPI CCDG 8 cut(s) 132, 159, 162, 266, 348, 455, 492, 693
Lsp1109I GCAGC 5 cut(s) 281, 412, 867, 919, 922
MaeI CTAG 4 cut(s) 29, 692, 806, 918
MalI GATC 6 cut(s) 468, 666, 768, 930, 1002, 1008
MboI GATC 6 cut(s) 466, 664, 766, 928, 1000, 1006
MboII GAAGA 8 cut(s) 44, 67, 238, 368, 525, 538, 541, 789
MfeI CAATTG 1 cut(s) 126
MhlI GDGCHC 1 cut(s) 308
MluCI AATT 7 cut(s) 6, 126, 201, 218, 288, 351, 986
MlyI GAGTC 1 cut(s) 477
MmeI TCCRAC 1 cut(s) 728
MnlI CCTC 8 cut(s) 125, 503, 516, 544, 634, 772, 838, 901
MroXI GAANNNNTTC 1 cut(s) 59
MspA1I CMGCKG 1 cut(s) 276
MspI CCGG 1 cut(s) 253
MspR9I CCNGG 2 cut(s) 253, 254
MunI CAATTG 1 cut(s) 126
MwoI GCNNNNNNNGC 5 cut(s) 282, 291, 303, 312, 877
NciI CCSGG 2 cut(s) 253, 254
NcoI CCATGG 1 cut(s) 185
NdeII GATC 6 cut(s) 466, 664, 766, 928, 1000, 1006
NlaIII CATG 7 cut(s) 22, 189, 312, 425, 601, 671, 731
NlaIV GGNNCC 2 cut(s) 169, 271
NspI RCATGY 1 cut(s) 601
PagI TCATGA 3 cut(s) 18, 667, 727
PciI ACATGT 1 cut(s) 597
PciSI GCTCTTC 1 cut(s) 351
PdmI GAANNNNTTC 1 cut(s) 59
PfeI GAWTC 4 cut(s) 74, 108, 559, 794
PkrI GCNGC 7 cut(s) 296, 328, 427, 813, 882, 909, 912
PleI GAGTC 1 cut(s) 477
PpsI GAGTC 1 cut(s) 477
PscI ACATGT 1 cut(s) 597
PspFI CCCAGC 1 cut(s) 118
PspN4I GGNNCC 2 cut(s) 169, 271
PstNI CAGNNNCTG 2 cut(s) 646, 877
RsaI GTAC 1 cut(s) 446
RsaNI GTAC 1 cut(s) 445
SapI GCTCTTC 1 cut(s) 351
SatI GCNGC 7 cut(s) 295, 327, 426, 812, 881, 908, 911
Sau3AI GATC 6 cut(s) 466, 664, 766, 928, 1000, 1006
SchI GAGTC 1 cut(s) 477
ScrFI CCNGG 2 cut(s) 253, 254
SduI GDGCHC 1 cut(s) 308
SmaI CCCGGG 1 cut(s) 254
SpeI ACTAGT 1 cut(s) 805
Sse9I AATT 7 cut(s) 6, 126, 201, 218, 288, 351, 986
SsiI CCGC 3 cut(s) 274, 327, 812
SspMI CTAG 4 cut(s) 29, 692, 806, 918
StyD4I CCNGG 2 cut(s) 251, 252
StyI CCWWGG 1 cut(s) 185
TaaI ACNGT 3 cut(s) 677, 839, 1023
TaqI TCGA 1 cut(s) 960
TasI AATT 7 cut(s) 6, 126, 201, 218, 288, 351, 986
TatI WGTACW 1 cut(s) 444
TauI GCSGC 2 cut(s) 329, 814
TfiI GAWTC 4 cut(s) 74, 108, 559, 794
TscAI CASTG 3 cut(s) 76, 352, 1026
TseI GCWGC 5 cut(s) 294, 425, 880, 907, 910
TspDTI ATGAA 1 cut(s) 7
TspGWI ACGGA 1 cut(s) 335
TspMI CCCGGG 1 cut(s) 252
TspRI CASTG 3 cut(s) 76, 352, 1026
XapI RAATTY 3 cut(s) 201, 218, 986
XceI RCATGY 1 cut(s) 601
XcmI CCANNNNNNNNNTGG 1 cut(s) 192
XmaI CCCGGG 1 cut(s) 252
XmnI GAANNNNTTC 1 cut(s) 59
XspI CTAG 4 cut(s) 29, 692, 806, 918
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.