RLG00000023549

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0011995
Physical Location & Seq
Forward (+)
25147579 .. 25150298
2720 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023549

Sequence Viewer

Length: 1149 bp
ATGTTTTCGTGGCTGGCAAGGATTGCGTGGACGTGTTGGAAGCCGGTGAGGAGATATGCGCGTATGAGTAAAGATGATATTGTTGATGACTCCTCCATTGAAGACCCTCTCGTTTGGTGCAGACCCCTTGACAAGCACGCCTACGGTGAATTCTCCTTCGCTGTCGTTCAGGCCAATGAGGTTCTCGAGGACCAGAGCCAAGTCGAGACCGGAAGGGATGCCACTTTTGTTGGAGTTTATGATGGACATGGCGGACCTGATGCGTCCAGATTCATTTCTGACCATCTCTTTGTCAATCTTATGAGACATGCTCGAGAAAAGACAACCATATCTGAAGATATCCTTAGAAGTGCCTTTTCTGCTACCGAGGATGGGTTCCTTACTCTTGTGCGTAGGACTTGTGGAATAAAACCAGTGATTGCAGCAGAAGGTTCTTGTTGTCTGGTTGGAGTTATCTGGAGAGGGACTTTGTATGTTGCTAATCTAGGTGACTCGAGAGCTGTAATTGGTTCTTTAGGTAGATCAAATAAGATAGTTGCCGAACAGCTGAACAGGGAACACAATGCAAGTATGGAAGAGGTTAGACAAGAGCTCAGGTCATTGCATCCGAATGATTCACACATTGTAGTTATGAAGCAGGGAGTTTGGCGTATCAAAGGCATCATACAGGTGTCTAGATCTATTGGCGATGCATACTTGAAGAGGCCAGAATTTTCTCTTGATCCTTCATTTCCGAGATTCCAACTTCCTGAACCCCTCGGGCGGCCTGTGCTGTCAGCAGAACCATCTGTATGTACTAGAGTTCTACGACCTGAAGATAGATTTATAATATTTGCATCAGACGGTCTTTGGGAACACATGACTAATCAGGAAGCTGTGGAAATTGTGCATAATAATCCTCGACAAGGAATTGCAAAGAGACTTCTGAAAGTATGTCTTGGTGAGGCAGGTAGAAAAAGGGATATGACATATGACGACCTTAAGAAGGTTGAAAAGGGTGTCAGGAGGTACTTCCATGATGATATTACGATTGTTGTCATTTTTATAGATCATGATTTACTGGGGAAAGCGCAACCTTTACCCGAGCTATCAGTACGAGGGTTCATTGACACGGTTGGACCATCAAGTTTTAGCATCTTCAAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

383

Amino Acids

43.16

Weight (kDa)

6.61

Isoelectric Point (pI)

47.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 72 - 313 8e-37 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011995)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06750 AT5G06750 AT5G06750
fragaria_vesca FvH4_6g22310
malus_domestica MD12G1057000.v1.1 MD14G1057600.v1.1
prunus_persica Prupe.7G077100_v2.0.a1
pyrus_communis pycom12g05090 pycom14g04670
rosa_chinensis RchiOBHm_Chr3g0479661
rosa_laevigata RLG00000023549
rosa_multiflora Rmu_sc0003755.1_g000003
rosa_roxburghii Rroxscaffold_6G00402080
rosa_rugosa Rorug03G0177300
rosa_samantha Rh3AG228000 Rh3BG261200 Rh3CG258300 Rh3DG254500
rosa_wichuraiana Rw3G020400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 827
Acc36I ACCTGC 1 cut(s) 938
AccII CGCG 1 cut(s) 61
AciI CCGC 2 cut(s) 252, 763
AclWI GGATC 1 cut(s) 716
AcsI RAATTY 2 cut(s) 149, 710
AcuI CTGAAG 2 cut(s) 354, 834
AfaI GTAC 3 cut(s) 796, 1010, 1095
AfiI CCNNNNNNNGG 4 cut(s) 372, 762, 905, 985
AflII CTTAAG 1 cut(s) 980
AflIII ACRYGT 1 cut(s) 32
AgsI TTSAA 4 cut(s) 101, 700, 992, 1141
AjiI CACGTC 1 cut(s) 33
AluBI AGCT 5 cut(s) 500, 547, 592, 875, 1087
AluI AGCT 5 cut(s) 500, 547, 592, 875, 1087
Alw21I GWGCWC 1 cut(s) 594
Alw26I GTCTC 3 cut(s) 200, 298, 913
AlwI GGATC 1 cut(s) 716
Ama87I CYCGRG 5 cut(s) 185, 312, 493, 758, 1082
AoxI GGCC 3 cut(s) 171, 704, 764
ApeKI GCWGC 1 cut(s) 422
ApoI RAATTY 2 cut(s) 149, 710
ArsI GACNNNNNNTTYG 2 cut(s) 272, 304
AspLEI GCGC 2 cut(s) 61, 1072
AspS9I GGNCC 3 cut(s) 190, 254, 1118
AsuHPI GGTGA 4 cut(s) 58, 158, 500, 953
AvaI CYCGRG 5 cut(s) 185, 312, 493, 758, 1082
AvaII GGWCC 3 cut(s) 190, 254, 1118
BanII GRGCYC 1 cut(s) 594
BbsI GAAGAC 1 cut(s) 108
Bbv12I GWGCWC 1 cut(s) 594
BbvI GCAGC 1 cut(s) 434
BccI CCATC 5 cut(s) 236, 291, 365, 793, 1129
BcoDI GTCTC 3 cut(s) 200, 298, 913
BfaI CTAG 3 cut(s) 485, 675, 798
BfrI CTTAAG 1 cut(s) 980
BfuAI ACCTGC 1 cut(s) 938
BglII AGATCT 1 cut(s) 677
BisI GCNGC 2 cut(s) 423, 764
BlsI GCNGC 2 cut(s) 424, 765
Bme18I GGWCC 3 cut(s) 190, 254, 1118
BmeT110I CYCGRG 5 cut(s) 185, 312, 493, 758, 1082
BmgBI CACGTC 1 cut(s) 33
BmgT120I GGNCC 3 cut(s) 190, 254, 1118
BmiI GGNNCC 1 cut(s) 377
BmrI ACTGGG 1 cut(s) 1070
BmsI GCATC 7 cut(s) 208, 250, 613, 669, 679, 845, 1143
BmuI ACTGGG 1 cut(s) 1070
BpiI GAAGAC 1 cut(s) 108
BplI GAGNNNNNCTC 2 cut(s) 295, 327
BpmI CTGGAG 1 cut(s) 478
Bpu10I CCTNAGC 1 cut(s) 593
BsaI GGTCTC 1 cut(s) 200
BsaJI CCNNGG 2 cut(s) 366, 757
BsaWI WCCGGW 1 cut(s) 209
Bsc4I CCNNNNNNNGG 4 cut(s) 372, 762, 905, 985
Bse118I RCCGGY 1 cut(s) 43
Bse1I ACTGG 2 cut(s) 413, 1065
Bse3DI GCAATG 1 cut(s) 599
BseDI CCNNGG 2 cut(s) 366, 757
BseGI GGATG 3 cut(s) 223, 376, 604
BseLI CCNNNNNNNGG 4 cut(s) 372, 762, 905, 985
BseMI GCAATG 1 cut(s) 599
BseMII CTCAG 1 cut(s) 607
BseNI ACTGG 2 cut(s) 413, 1065
BseRI GAGGAG 2 cut(s) 64, 82
BseXI GCAGC 1 cut(s) 434
BsgI GTGCAG 1 cut(s) 139
Bsh1236I CGCG 1 cut(s) 61
BshFI GGCC 3 cut(s) 173, 706, 766
BsiHKAI GWGCWC 1 cut(s) 594
BsiHKCI CYCGRG 5 cut(s) 185, 312, 493, 758, 1082
BsiSI CCGG 2 cut(s) 44, 210
BslFI GGGAC 1 cut(s) 478
BslI CCNNNNNNNGG 4 cut(s) 372, 762, 905, 985
BsmAI GTCTC 3 cut(s) 200, 298, 913
BsmFI GGGAC 1 cut(s) 478
BsnI GGCC 3 cut(s) 173, 706, 766
Bso31I GGTCTC 1 cut(s) 200
BsoBI CYCGRG 5 cut(s) 185, 312, 493, 758, 1082
Bsp1286I GDGCHC 1 cut(s) 594
Bsp143I GATC 4 cut(s) 521, 677, 721, 1048
BspACI CCGC 2 cut(s) 252, 763
BspANI GGCC 3 cut(s) 173, 706, 766
BspCNI CTCAG 1 cut(s) 606
BspFNI CGCG 1 cut(s) 61
BspHI TCATGA 1 cut(s) 1051
BspLI GGNNCC 1 cut(s) 377
BspMI ACCTGC 1 cut(s) 938
BspPI GGATC 1 cut(s) 716
BspTI CTTAAG 1 cut(s) 980
BspTNI GGTCTC 1 cut(s) 200
BsrDI GCAATG 1 cut(s) 599
BsrFI RCCGGY 1 cut(s) 43
BsrI ACTGG 2 cut(s) 413, 1065
BssAI RCCGGY 1 cut(s) 43
BssECI CCNNGG 2 cut(s) 366, 757
BssMI GATC 4 cut(s) 521, 677, 721, 1048
Bst4CI ACNGT 3 cut(s) 146, 845, 1114
Bst6I CTCTTC 2 cut(s) 570, 695
BstAFI CTTAAG 1 cut(s) 980
BstAPI GCANNNNNTGC 1 cut(s) 23
BstC8I GCNNGC 2 cut(s) 15, 138
BstDEI CTNAG 2 cut(s) 344, 593
BstENI CCTNNNNNAGG 2 cut(s) 903, 983
BstF5I GGATG 3 cut(s) 223, 376, 604
BstFNI CGCG 1 cut(s) 61
BstHHI GCGC 2 cut(s) 61, 1072
BstKTI GATC 4 cut(s) 524, 680, 724, 1051
BstMAI GTCTC 3 cut(s) 200, 298, 913
BstMBI GATC 4 cut(s) 521, 677, 721, 1048
BstMWI GCNNNNNNNGC 3 cut(s) 23, 359, 769
BstNSI RCATGY 1 cut(s) 311
BstUI CGCG 1 cut(s) 61
BstV1I GCAGC 1 cut(s) 434
BstV2I GAAGAC 1 cut(s) 108
BstX2I RGATCY 1 cut(s) 677
BstYI RGATCY 1 cut(s) 677
BsuRI GGCC 3 cut(s) 173, 706, 766
BtgZI GCGATG 1 cut(s) 702
BtrI CACGTC 1 cut(s) 33
BtsCI GGATG 3 cut(s) 223, 376, 604
BtsIMutI CAGTG 1 cut(s) 420
BveI ACCTGC 1 cut(s) 938
Cac8I GCNNGC 2 cut(s) 15, 138
CciI TCATGA 1 cut(s) 1051
CfoI GCGC 2 cut(s) 61, 1072
Cfr10I RCCGGY 1 cut(s) 43
Cfr13I GGNCC 3 cut(s) 190, 254, 1118
CseI GACGC 1 cut(s) 252
Csp6I GTAC 3 cut(s) 795, 1009, 1094
CspCI CAANNNNNGTGG 2 cut(s) 211, 246
CviAII CATG 5 cut(s) 248, 308, 859, 1016, 1052
CviQI GTAC 3 cut(s) 795, 1009, 1094
DdeI CTNAG 2 cut(s) 344, 593
DpnI GATC 4 cut(s) 523, 679, 723, 1050
DpnII GATC 4 cut(s) 521, 677, 721, 1048
Eam1104I CTCTTC 2 cut(s) 570, 695
EarI CTCTTC 2 cut(s) 570, 695
EciI GGCGGA 1 cut(s) 267
Ecl136II GAGCTC 1 cut(s) 592
Eco24I GRGCYC 1 cut(s) 594
Eco31I GGTCTC 1 cut(s) 200
Eco32I GATATC 1 cut(s) 340
Eco47I GGWCC 3 cut(s) 190, 254, 1118
Eco53kI GAGCTC 1 cut(s) 592
Eco57I CTGAAG 2 cut(s) 354, 834
Eco88I CYCGRG 5 cut(s) 185, 312, 493, 758, 1082
EcoICRI GAGCTC 1 cut(s) 592
EcoNI CCTNNNNNAGG 2 cut(s) 903, 983
EcoRI GAATTC 1 cut(s) 149
EcoRV GATATC 1 cut(s) 340
EcoT22I ATGCAT 1 cut(s) 694
EcoT38I GRGCYC 1 cut(s) 594
FaeI CATG 5 cut(s) 251, 311, 862, 1019, 1055
FalI AAGNNNNNCTT 4 cut(s) 327, 359, 921, 953
FaqI GGGAC 1 cut(s) 478
FatI CATG 5 cut(s) 247, 307, 858, 1015, 1051
FauNDI CATATG 1 cut(s) 970
Fnu4HI GCNGC 2 cut(s) 423, 764
FokI GGATG 3 cut(s) 230, 383, 591
FriOI GRGCYC 1 cut(s) 594
Fsp4HI GCNGC 2 cut(s) 423, 764
FspBI CTAG 3 cut(s) 485, 675, 798
GlaI GCGC 2 cut(s) 60, 1071
GluI GCNGC 2 cut(s) 423, 764
GsuI CTGGAG 1 cut(s) 478
HaeIII GGCC 3 cut(s) 173, 706, 766
HapII CCGG 2 cut(s) 44, 210
HgaI GACGC 1 cut(s) 252
HhaI GCGC 2 cut(s) 61, 1072
Hin1II CATG 5 cut(s) 251, 311, 862, 1019, 1055
Hin6I GCGC 2 cut(s) 59, 1070
HinP1I GCGC 2 cut(s) 59, 1070
HinfI GANTC 5 cut(s) 89, 270, 491, 614, 738
HpaII CCGG 2 cut(s) 44, 210
HphI GGTGA 4 cut(s) 58, 158, 500, 953
Hpy166II GTNNAC 1 cut(s) 30
Hpy188I TCNGA 6 cut(s) 280, 334, 609, 735, 841, 927
Hpy8I GTNNAC 1 cut(s) 30
HpyAV CCTTC 5 cut(s) 166, 207, 422, 735, 979
HpyCH4III ACNGT 3 cut(s) 146, 845, 1114
HpyCH4IV ACGT 1 cut(s) 32
HpyCH4V TGCA 8 cut(s) 120, 422, 566, 604, 692, 836, 889, 914
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 359, 769
HpyF3I CTNAG 2 cut(s) 344, 593
HpySE526I ACGT 1 cut(s) 32
Hsp92II CATG 5 cut(s) 251, 311, 862, 1019, 1055
HspAI GCGC 2 cut(s) 59, 1070
Kzo9I GATC 4 cut(s) 521, 677, 721, 1048
Lsp1109I GCAGC 1 cut(s) 434
LweI GCATC 7 cut(s) 208, 250, 613, 669, 679, 845, 1143
MaeI CTAG 3 cut(s) 485, 675, 798
MaeII ACGT 1 cut(s) 32
MaeIII GTNAC 1 cut(s) 488
MalI GATC 4 cut(s) 523, 679, 723, 1050
MboI GATC 4 cut(s) 521, 677, 721, 1048
MboII GAAGA 6 cut(s) 113, 347, 587, 712, 827, 1129
MflI RGATCY 1 cut(s) 677
MhlI GDGCHC 1 cut(s) 594
MluCI AATT 5 cut(s) 149, 504, 710, 882, 909
MlyI GAGTC 2 cut(s) 83, 485
MmeI TCCRAC 5 cut(s) 17, 211, 427, 766, 1096
Mph1103I ATGCAT 1 cut(s) 694
MseI TTAA 1 cut(s) 981
MslI CAYNNNNRTG 3 cut(s) 609, 668, 790
MspA1I CMGCKG 1 cut(s) 547
MspCI CTTAAG 1 cut(s) 980
MspI CCGG 2 cut(s) 44, 210
MvnI CGCG 1 cut(s) 61
MwoI GCNNNNNNNGC 3 cut(s) 23, 359, 769
NdeI CATATG 1 cut(s) 970
NdeII GATC 4 cut(s) 521, 677, 721, 1048
NlaIII CATG 5 cut(s) 251, 311, 862, 1019, 1055
NlaIV GGNNCC 1 cut(s) 377
NmuCI GTSAC 1 cut(s) 488
NsiI ATGCAT 1 cut(s) 694
NspI RCATGY 1 cut(s) 311
PaeR7I CTCGAG 3 cut(s) 185, 312, 493
PagI TCATGA 1 cut(s) 1051
PfeI GAWTC 3 cut(s) 270, 614, 738
PkrI GCNGC 2 cut(s) 424, 765
PleI GAGTC 2 cut(s) 83, 485
PpsI GAGTC 2 cut(s) 83, 485
PsiI TTATAA 1 cut(s) 827
Psp124BI GAGCTC 1 cut(s) 594
PspN4I GGNNCC 1 cut(s) 377
PspPI GGNCC 3 cut(s) 190, 254, 1118
PsuI RGATCY 1 cut(s) 677
PvuII CAGCTG 1 cut(s) 547
RsaI GTAC 3 cut(s) 796, 1010, 1095
RsaNI GTAC 3 cut(s) 795, 1009, 1094
RseI CAYNNNNRTG 3 cut(s) 609, 668, 790
SacI GAGCTC 1 cut(s) 594
SaqAI TTAA 1 cut(s) 981
SatI GCNGC 2 cut(s) 423, 764
Sau3AI GATC 4 cut(s) 521, 677, 721, 1048
Sau96I GGNCC 3 cut(s) 190, 254, 1118
SchI GAGTC 2 cut(s) 83, 485
SduI GDGCHC 1 cut(s) 594
SfaNI GCATC 7 cut(s) 208, 250, 613, 669, 679, 845, 1143
Sfr274I CTCGAG 3 cut(s) 185, 312, 493
SinI GGWCC 3 cut(s) 190, 254, 1118
SlaI CTCGAG 3 cut(s) 185, 312, 493
SmiMI CAYNNNNRTG 3 cut(s) 609, 668, 790
SmlI CTYRAG 4 cut(s) 185, 312, 493, 980
SmoI CTYRAG 4 cut(s) 185, 312, 493, 980
Sse9I AATT 5 cut(s) 149, 504, 710, 882, 909
SsiI CCGC 2 cut(s) 252, 763
SspI AATATT 1 cut(s) 831
SspMI CTAG 3 cut(s) 485, 675, 798
SstI GAGCTC 1 cut(s) 594
TaaI ACNGT 3 cut(s) 146, 845, 1114
TaiI ACGT 1 cut(s) 35
TaqI TCGA 5 cut(s) 186, 204, 313, 494, 901
TasI AATT 5 cut(s) 149, 504, 710, 882, 909
TatI WGTACW 1 cut(s) 794
TauI GCSGC 1 cut(s) 766
TfiI GAWTC 3 cut(s) 270, 614, 738
Tru1I TTAA 1 cut(s) 981
Tru9I TTAA 1 cut(s) 981
TscAI CASTG 1 cut(s) 420
TseFI GTSAC 1 cut(s) 488
TseI GCWGC 1 cut(s) 422
Tsp45I GTSAC 1 cut(s) 488
TspDTI ATGAA 4 cut(s) 262, 647, 717, 1093
TspRI CASTG 1 cut(s) 420
Vha464I CTTAAG 1 cut(s) 980
VpaK11BI GGWCC 3 cut(s) 190, 254, 1118
XagI CCTNNNNNAGG 2 cut(s) 903, 983
XapI RAATTY 2 cut(s) 149, 710
XbaI TCTAGA 1 cut(s) 674
XceI RCATGY 1 cut(s) 311
XhoI CTCGAG 3 cut(s) 185, 312, 493
XspI CTAG 3 cut(s) 485, 675, 798
Zsp2I ATGCAT 1 cut(s) 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.