AT5G08010

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0009177
Physical Location & Seq
Forward (+)
2569098 .. 2571877
2780 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G08010.1

Sequence Viewer

Length: 1701 bp
ATGGATCTATGGTTAATCGCAGCTACTGCTGCTACAGGATATATAACCAAGCATTTGCGAAATGTATCCAAAGGTAAATCTTCTTCTGAAGATTTGACTAATGTGAAGCTAGAGTCACCGAGATGCTTGGCTAGTAATGTAGTAAGAGTTAAAAAACCAAAAGAAGAAAACTTTGAGGATTGCTTAAATGGGGAAACTCTTGATCTATATGAATGTGGCAATGCATATGGAGTGGAAGTAGCTTCGAATAATGAGGAGGATTTGGGATATGATGATGAGATTCGTTCAGGTTCTTTTGGGAACAGAGCGTTTCTTAGGAGAAATCAGTGTCCTATCAAGCCTTTTTCTTTGGAGAAAAGCATTATGTCTCGGTTACATAGAGAGAAAATATCCATGGAGGAATATATGCGTAGTCCGTTTCCATCACCTTGTGGTTCAGTTTCGAGGCCCTTGCTTGTTACTGATGGTACAAATGTAATTAGCAAGAATACTGGAGATTCTGTTAGCCAGCAAGTTTCGGAATGCGGGATTCCTCAGCTTAGGAAGTTGAAATCTTCACTTCTTTACGCTAAAAGGGGAGTTGGAGATGCGAAGAGCGTGAGTAGAAGATCTGATAATGGGACTGGATCAAATGATCCAGTGTTAGTGCTATGCGTTGGGATTTCAATTGGGATAATGTCATCATTTGTAGCTAACCAAACCGAACTAAACAAAGTCAGAGCAGAGTCAAAGCAGACAGAGAATTTGGGAAAAGAGTTAGAAGATGACATACACGATGGTGAAAAACAGTGTGATGAAAAGACAGCAGAGAATTCAGAATCTATAAGTAAAATTGAAGCAGAACTTGAAGCTGAACTTGAAAGGCTGGAGATCAACATGATTTCCTCCAACATTGAGACAAAACTCTCAGATGTCTTTGAGCTGGAGCCAGATTTCGAAGTAGAATTTGCGCAGGGTGAGCTGAGAGATGATCAGGTTGAAAGACAGCGTTTTGATGAAACCGTGTCCAACCAGGAACGGAGTAGCAATTCCACACCTGAATCAGGAAACTACATAGTCTCACCTCGTGAGTTAAGCTTGCGTCTGCTTGGAGTTATCAATTCATGCTATGAAAAACGGATAAAAGAACTTGAGAATGCCTTACAAGAGAGTCAGAGGAAAGTGGAGCAGCTGGTCATAGAATCAGAGGAAAAGAAGAAACCATTGTCAAGGATTTGGGAAACCCATGAAGAGATGAAATATAAGAGGGGCTCAAATCCTCCAGTTTCTGTAGCTCATATAGAGAAGAAACATAATCCTGCAGAGATCCAACCTCTGGTTATGACTTTAGAAGGGGAAGCACTTGACGCATTCAATGAATCTTACGAGGAACTGATGGATATTAACGACTATTCAGAAGAAGACGATTTACAATGTGTGATGCAGGAGAATGAGCGGCAAGAAGAATTGTCTTTGACGAGCAAAAGCTCACCTTGGAGCCATAAAGATTACATAAAGGATTCTTCAAGAACTTCAGAGGATGTGAATTTGTCCATGCTGCAAGATCTACTTGGTCTGAGCGACGAAGAAGAAGAAGAAGAAGATGAGATGGAGAAGCATCTGATAAAGCAGATTGTTGAGAAAACAAAGCAAGGGTCTTCTGCTGTGTTAAATGCCCAGAAAATGCTATTCCTCATGGAAGAAATACAACCAAATCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

566

Amino Acids

63.98

Weight (kDa)

4.71

Isoelectric Point (pI)

60.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 951
AccB7I CCANNNNNTGG 1 cut(s) 1315
AccBSI CCGCTC 1 cut(s) 1435
AciI CCGC 2 cut(s) 525, 1435
AclWI GGATC 4 cut(s) 12, 629, 634, 1300
AcsI RAATTY 4 cut(s) 742, 811, 944, 1525
AcuI CTGAAG 2 cut(s) 108, 1497
AdeI CACNNNGTG 2 cut(s) 431, 1067
AfaI GTAC 1 cut(s) 469
AfiI CCNNNNNNNGG 2 cut(s) 1043, 1315
AgsI TTSAA 8 cut(s) 550, 666, 836, 848, 860, 980, 1354, 1506
AjnI CCWGG 1 cut(s) 1011
AleI CACNNNNGTG 1 cut(s) 777
Alw26I GTCTC 3 cut(s) 372, 890, 1063
AlwI GGATC 4 cut(s) 12, 629, 634, 1300
AlwNI CAGNNNCTG 2 cut(s) 26, 1268
AoxI GGCC 1 cut(s) 446
ApeKI GCWGC 4 cut(s) 20, 29, 1168, 1537
ApoI RAATTY 4 cut(s) 742, 811, 944, 1525
ArsI GACNNNNNNTTYG 4 cut(s) 727, 759, 1619, 1651
AspLEI GCGC 1 cut(s) 952
AspS9I GGNCC 1 cut(s) 447
AsuHPI GGTGA 6 cut(s) 108, 417, 791, 968, 1053, 1461
AsuII TTCGAA 2 cut(s) 245, 936
BaeI ACNNNNGTAYC 2 cut(s) 459, 492
BanII GRGCYC 1 cut(s) 1253
BarI GAAGNNNNNNTAC 6 cut(s) 67, 99, 753, 785, 1392, 1424
BauI CACGAG 1 cut(s) 1065
BbsI GAAGAC 2 cut(s) 1407, 1629
BbvCI CCTCAGC 1 cut(s) 534
BbvI GCAGC 4 cut(s) 16, 32, 1180, 1524
BccI CCATC 5 cut(s) 430, 458, 770, 1369, 1582
BcgI CGANNNNNNTGC 2 cut(s) 433, 467
BciT130I CCWGG 1 cut(s) 1013
BciVI GTATCC 1 cut(s) 76
BclI TGATCA 1 cut(s) 970
BcoDI GTCTC 3 cut(s) 372, 890, 1063
BfaI CTAG 2 cut(s) 110, 132
BfmI CTRYAG 3 cut(s) 33, 1269, 1299
BfuI GTATCC 1 cut(s) 76
BglII AGATCT 2 cut(s) 608, 1543
BisI GCNGC 5 cut(s) 21, 30, 1169, 1436, 1538
BlsI GCNGC 5 cut(s) 22, 31, 1170, 1437, 1539
Bme1390I CCNGG 1 cut(s) 1013
BmgT120I GGNCC 1 cut(s) 447
BmiI GGNNCC 2 cut(s) 927, 1478
BmrFI CCNGG 1 cut(s) 1013
BmsI GCATC 4 cut(s) 113, 577, 1410, 1606
BpiI GAAGAC 2 cut(s) 1407, 1629
BpmI CTGGAG 4 cut(s) 513, 887, 944, 1245
Bpu10I CCTNAGC 2 cut(s) 534, 539
Bpu14I TTCGAA 2 cut(s) 245, 936
BpuEI CTTGAG 1 cut(s) 1151
BsaJI CCNNGG 2 cut(s) 393, 1472
BsaXI ACNNNNNCTCC 4 cut(s) 222, 252, 486, 516
Bsc4I CCNNNNNNNGG 2 cut(s) 1043, 1315
Bse1I ACTGG 4 cut(s) 496, 628, 638, 1262
Bse3DI GCAATG 1 cut(s) 226
BseBI CCWGG 1 cut(s) 1013
BseDI CCNNGG 2 cut(s) 393, 1472
BseGI GGATG 1 cut(s) 1525
BseLI CCNNNNNNNGG 2 cut(s) 1043, 1315
BseMI GCAATG 1 cut(s) 226
BseMII CTCAG 4 cut(s) 548, 921, 953, 1547
BseNI ACTGG 4 cut(s) 496, 628, 638, 1262
BseRI GAGGAG 1 cut(s) 269
BseXI GCAGC 4 cut(s) 16, 32, 1180, 1524
BshFI GGCC 1 cut(s) 448
BslFI GGGAC 1 cut(s) 634
BslI CCNNNNNNNGG 2 cut(s) 1043, 1315
BsmAI GTCTC 3 cut(s) 372, 890, 1063
BsmFI GGGAC 1 cut(s) 634
BsmI GAATGC 3 cut(s) 527, 1141, 1349
BsnI GGCC 1 cut(s) 448
Bsp119I TTCGAA 2 cut(s) 245, 936
Bsp1286I GDGCHC 1 cut(s) 1253
Bsp143I GATC 9 cut(s) 4, 202, 608, 626, 634, 870, 970, 1305, 1543
Bsp19I CCATGG 1 cut(s) 393
BspACI CCGC 2 cut(s) 525, 1435
BspANI GGCC 1 cut(s) 448
BspCNI CTCAG 4 cut(s) 547, 920, 954, 1548
BspLI GGNNCC 2 cut(s) 927, 1478
BspMAI CTGCAG 1 cut(s) 1303
BspPI GGATC 4 cut(s) 12, 629, 634, 1300
BspQI GCTCTTC 1 cut(s) 587
BspT104I TTCGAA 2 cut(s) 245, 936
BsrBI CCGCTC 1 cut(s) 1435
BsrDI GCAATG 1 cut(s) 226
BsrI ACTGG 4 cut(s) 496, 628, 638, 1262
BssECI CCNNGG 2 cut(s) 393, 1472
BssMI GATC 9 cut(s) 4, 202, 608, 626, 634, 870, 970, 1305, 1543
BssSI CACGAG 1 cut(s) 1065
BssT1I CCWWGG 2 cut(s) 393, 1472
Bst2BI CACGAG 1 cut(s) 1065
Bst2UI CCWGG 1 cut(s) 1013
Bst4CI ACNGT 2 cut(s) 789, 1003
Bst6I CTCTTC 2 cut(s) 587, 1224
BstAPI GCANNNNNTGC 1 cut(s) 26
BstBI TTCGAA 2 cut(s) 245, 936
BstC8I GCNNGC 2 cut(s) 509, 1079
BstDEI CTNAG 6 cut(s) 314, 534, 539, 907, 962, 1556
BstDSI CCRYGG 1 cut(s) 393
BstENI CCTNNNNNAGG 1 cut(s) 1041
BstF5I GGATG 1 cut(s) 1525
BstHHI GCGC 1 cut(s) 952
BstKTI GATC 9 cut(s) 7, 205, 611, 629, 637, 873, 973, 1308, 1546
BstMAI GTCTC 3 cut(s) 372, 890, 1063
BstMBI GATC 9 cut(s) 4, 202, 608, 626, 634, 870, 970, 1305, 1543
BstMWI GCNNNNNNNGC 4 cut(s) 26, 29, 958, 1346
BstNI CCWGG 1 cut(s) 1013
BstSCI CCNGG 1 cut(s) 1011
BstSFI CTRYAG 3 cut(s) 33, 1269, 1299
BstV1I GCAGC 4 cut(s) 16, 32, 1180, 1524
BstV2I GAAGAC 2 cut(s) 1407, 1629
BstX2I RGATCY 4 cut(s) 4, 608, 1305, 1543
BstYI RGATCY 4 cut(s) 4, 608, 1305, 1543
BsuI GTATCC 1 cut(s) 76
BsuRI GGCC 1 cut(s) 448
BtgI CCRYGG 1 cut(s) 393
BtsCI GGATG 1 cut(s) 1525
BtsIMutI CAGTG 3 cut(s) 332, 645, 794
Cac8I GCNNGC 2 cut(s) 509, 1079
CaiI CAGNNNCTG 2 cut(s) 26, 1268
CfoI GCGC 1 cut(s) 952
Cfr13I GGNCC 1 cut(s) 447
CseI GACGC 2 cut(s) 1070, 1355
Csp6I GTAC 1 cut(s) 468
CviAII CATG 6 cut(s) 394, 877, 1104, 1226, 1534, 1675
CviQI GTAC 1 cut(s) 468
DdeI CTNAG 6 cut(s) 314, 534, 539, 907, 962, 1556
DpnI GATC 9 cut(s) 6, 204, 610, 628, 636, 872, 972, 1307, 1545
DpnII GATC 9 cut(s) 4, 202, 608, 626, 634, 870, 970, 1305, 1543
DraIII CACNNNGTG 2 cut(s) 431, 1067
Eam1104I CTCTTC 2 cut(s) 587, 1224
EarI CTCTTC 2 cut(s) 587, 1224
Eco130I CCWWGG 2 cut(s) 393, 1472
Eco24I GRGCYC 1 cut(s) 1253
Eco57I CTGAAG 2 cut(s) 108, 1497
EcoNI CCTNNNNNAGG 1 cut(s) 1041
EcoO109I RGGNCCY 1 cut(s) 447
EcoRI GAATTC 1 cut(s) 811
EcoRII CCWGG 1 cut(s) 1011
EcoT14I CCWWGG 2 cut(s) 393, 1472
EcoT22I ATGCAT 1 cut(s) 226
EcoT38I GRGCYC 1 cut(s) 1253
ErhI CCWWGG 2 cut(s) 393, 1472
FaeI CATG 6 cut(s) 397, 880, 1107, 1229, 1537, 1678
FalI AAGNNNNNCTT 8 cut(s) 828, 860, 840, 872, 1456, 1488, 1533, 1565
FaqI GGGAC 1 cut(s) 634
FatI CATG 6 cut(s) 393, 876, 1103, 1225, 1533, 1674
FauI CCCGC 1 cut(s) 518
FauNDI CATATG 1 cut(s) 226
FbaI TGATCA 1 cut(s) 970
Fnu4HI GCNGC 5 cut(s) 21, 30, 1169, 1436, 1538
FokI GGATG 1 cut(s) 1532
FriOI GRGCYC 1 cut(s) 1253
Fsp4HI GCNGC 5 cut(s) 21, 30, 1169, 1436, 1538
FspBI CTAG 2 cut(s) 110, 132
FspI TGCGCA 1 cut(s) 951
GlaI GCGC 1 cut(s) 951
GluI GCNGC 5 cut(s) 21, 30, 1169, 1436, 1538
GsuI CTGGAG 4 cut(s) 513, 887, 944, 1245
HaeIII GGCC 1 cut(s) 448
HgaI GACGC 2 cut(s) 1070, 1355
HhaI GCGC 1 cut(s) 952
Hin1II CATG 6 cut(s) 397, 880, 1107, 1229, 1537, 1678
Hin6I GCGC 1 cut(s) 950
HinP1I GCGC 1 cut(s) 950
HindIII AAGCTT 1 cut(s) 1075
HphI GGTGA 6 cut(s) 108, 417, 791, 968, 1053, 1461
Hpy188III TCNNGA 4 cut(s) 200, 1044, 1067, 1506
Hpy99I CGWCG 1 cut(s) 1565
HpyAV CCTTC 1 cut(s) 1325
HpyCH4III ACNGT 2 cut(s) 789, 1003
HpyCH4V TGCA 4 cut(s) 224, 1301, 1423, 1540
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 29, 958, 1346
HpyF3I CTNAG 6 cut(s) 314, 534, 539, 907, 962, 1556
Hsp92II CATG 6 cut(s) 397, 880, 1107, 1229, 1537, 1678
HspAI GCGC 1 cut(s) 950
Ksp22I TGATCA 1 cut(s) 970
Kzo9I GATC 9 cut(s) 4, 202, 608, 626, 634, 870, 970, 1305, 1543
LguI GCTCTTC 1 cut(s) 587
LmnI GCTCC 3 cut(s) 925, 1165, 1476
Lsp1109I GCAGC 4 cut(s) 16, 32, 1180, 1524
LweI GCATC 4 cut(s) 113, 577, 1410, 1606
MaeI CTAG 2 cut(s) 110, 132
MaeIII GTNAC 3 cut(s) 114, 372, 457
MalI GATC 9 cut(s) 6, 204, 610, 628, 636, 872, 972, 1307, 1545
MbiI CCGCTC 1 cut(s) 1435
MboI GATC 9 cut(s) 4, 202, 608, 626, 634, 870, 970, 1305, 1543
MfeI CAATTG 1 cut(s) 666
MflI RGATCY 4 cut(s) 4, 608, 1305, 1543
MhlI GDGCHC 1 cut(s) 1253
MlyI GAGTC 3 cut(s) 122, 734, 1159
MmeI TCCRAC 4 cut(s) 562, 912, 1032, 1333
Mph1103I ATGCAT 1 cut(s) 226
MseI TTAA 6 cut(s) 14, 150, 185, 1073, 1383, 1649
MslI CAYNNNNRTG 2 cut(s) 121, 777
MspA1I CMGCKG 1 cut(s) 1171
MspR9I CCNGG 1 cut(s) 1013
MunI CAATTG 1 cut(s) 666
Mva1269I GAATGC 3 cut(s) 527, 1141, 1349
MvaI CCWGG 1 cut(s) 1013
MwoI GCNNNNNNNGC 4 cut(s) 26, 29, 958, 1346
NcoI CCATGG 1 cut(s) 393
NdeI CATATG 1 cut(s) 226
NdeII GATC 9 cut(s) 4, 202, 608, 626, 634, 870, 970, 1305, 1543
NlaIII CATG 6 cut(s) 397, 880, 1107, 1229, 1537, 1678
NlaIV GGNNCC 2 cut(s) 927, 1478
NmuCI GTSAC 1 cut(s) 114
NsbI TGCGCA 1 cut(s) 951
NsiI ATGCAT 1 cut(s) 226
NspV TTCGAA 2 cut(s) 245, 936
OliI CACNNNNGTG 1 cut(s) 777
PciSI GCTCTTC 1 cut(s) 587
PctI GAATGC 3 cut(s) 527, 1141, 1349
PfeI GAWTC 8 cut(s) 280, 497, 529, 818, 1040, 1181, 1358, 1499
PflMI CCANNNNNTGG 1 cut(s) 1315
PkrI GCNGC 5 cut(s) 22, 31, 1170, 1437, 1539
PleI GAGTC 3 cut(s) 121, 733, 1158
PpsI GAGTC 3 cut(s) 121, 733, 1158
Psp6I CCWGG 1 cut(s) 1011
PspGI CCWGG 1 cut(s) 1011
PspN4I GGNNCC 2 cut(s) 927, 1478
PspPI GGNCC 1 cut(s) 447
PstI CTGCAG 1 cut(s) 1303
PstNI CAGNNNCTG 2 cut(s) 26, 1268
PsuI RGATCY 4 cut(s) 4, 608, 1305, 1543
PvuII CAGCTG 1 cut(s) 1171
RsaI GTAC 1 cut(s) 469
RsaNI GTAC 1 cut(s) 468
RseI CAYNNNNRTG 2 cut(s) 121, 777
SapI GCTCTTC 1 cut(s) 587
SaqAI TTAA 6 cut(s) 14, 150, 185, 1073, 1383, 1649
SatI GCNGC 5 cut(s) 21, 30, 1169, 1436, 1538
Sau3AI GATC 9 cut(s) 4, 202, 608, 626, 634, 870, 970, 1305, 1543
Sau96I GGNCC 1 cut(s) 447
SchI GAGTC 3 cut(s) 122, 734, 1159
ScrFI CCNGG 1 cut(s) 1013
SduI GDGCHC 1 cut(s) 1253
SfaNI GCATC 4 cut(s) 113, 577, 1410, 1606
SfcI CTRYAG 3 cut(s) 33, 1269, 1299
SfuI TTCGAA 2 cut(s) 245, 936
SmiMI CAYNNNNRTG 2 cut(s) 121, 777
SmlI CTYRAG 1 cut(s) 1130
SmoI CTYRAG 1 cut(s) 1130
SsiI CCGC 2 cut(s) 525, 1435
SspMI CTAG 2 cut(s) 110, 132
StyD4I CCNGG 1 cut(s) 1011
StyI CCWWGG 2 cut(s) 393, 1472
TaaI ACNGT 2 cut(s) 789, 1003
TaqI TCGA 3 cut(s) 245, 443, 936
TauI GCSGC 1 cut(s) 1438
TfiI GAWTC 8 cut(s) 280, 497, 529, 818, 1040, 1181, 1358, 1499
Tru1I TTAA 6 cut(s) 14, 150, 185, 1073, 1383, 1649
Tru9I TTAA 6 cut(s) 14, 150, 185, 1073, 1383, 1649
TscAI CASTG 3 cut(s) 332, 645, 794
TseFI GTSAC 1 cut(s) 114
TseI GCWGC 4 cut(s) 20, 29, 1168, 1537
Tsp45I GTSAC 1 cut(s) 114
TspDTI ATGAA 8 cut(s) 225, 810, 1011, 1092, 1125, 1242, 1250, 1371
TspGWI ACGGA 3 cut(s) 405, 1033, 1132
TspRI CASTG 3 cut(s) 332, 645, 794
Van91I CCANNNNNTGG 1 cut(s) 1315
XagI CCTNNNNNAGG 1 cut(s) 1041
XapI RAATTY 4 cut(s) 742, 811, 944, 1525
XspI CTAG 2 cut(s) 110, 132
Zsp2I ATGCAT 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.