AT5G61040

BEST Arabidopsis thaliana protein match is

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
24562333 .. 24564979
2647 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G61040.1

Sequence Viewer

Length: 1773 bp
ATGGATGTTTGGTTAATCGCAGCGACTGCTGCTACGGGATATATAGCTAAGCAGTTGCAGAATGTAACCAAAGGTAAAGATAACGTTCTTGAATCTTCTTCTGAAGATGTGAAGCCAGAATCTCCTCCTGGTTGCTTGCTTAGCAGATTAGTAAGAGTCAAAAAGGCTAATGAAAATAAGTTTGGGGATGAGAAAATGCTATCAGATGGGGATAATCCAGATGCATCTACGAGTGGGGAAAGCTCAGGATATTACGAAACTAACCATTCAGATACTTTGTTCGGTTTGATGCCCGAGTTCCCGGAGATGGAACTGGGGACTTGGAAAACCAGTGGTAATCTTGTAGGTGACACACAGTTGAATTCTTCATTTAGGAGAAACCAGCGGTTCAGGCGATTAATCAAACCTTTGAGTTCGATGGATAGCTGCTTAATGTCTCGGTTTCATAGAGAACAAATGACCATAGAAGATTACATGACTAGCCCATTTCCATCACCTCACGCTTCAGTTTCAAGGCCATTACTTGTCACTGATGGTACTCGAGTAATTAGCAAGAGTGCTGCAGATTCTTTGTGGCTGAGCCAACATATTGTTCTCAGTGAAGATAAGGCTACATTAAGTTGTGGAGTCCCCGGAGTGGAGTCTTCGATTGAGAGAGTGGGAAATGAGAAGAGCAAGAGTAGAAAACATGGACTAGGTGATGCAACAATGTTGTTACAAATCGGGATCTCGATTGGCATCATGTCCTCATTTATGGCAAGCCAAGCCGAAGTGAGCAAAGTCAAACAAGAGCTGAAGCAAACAGAGAACTTGGTGCATGATTTAGAAGATGAGCTTGAGATGAAAGACACGTTGATAGTGAAGGAGATAGATATTGAAAAGGCAGCTGAGAGTTCAGAATCTATAAGTAATATTGAAGCAGAGCTTGAAGCGGAACTTGAAAGGCTAGAAATTAACATGAATTCCTCCAACATTGAGACAAGACTCTCTGATATAATAGAGATGGAGCCGGATTGTGAGGTAGAATTTGCACAGGGTGAACTGAGAGCTGATCGGGTTAAAGGGAAGCGTTTAGATGAAACTGAGTCCAACCAAGACCCAAGTGGTAACTCCACACCTGAGTCAGGAAACTATGCTGTCTCACCTCGCGAATTGAGCTTGCGGTTGCATAAAGTTATCAATTCACGTCTTGAGAAACGGATTGGAGAGCTCGAGACTGCACTCCAAGAGAGCCAAAGGAAGGTAGAGCAGCTAGTCATGGAATCAGAAAGCAAGAAGAAGTCATGGTCAAGATTATGGGAAACCCGTGAAGTGATGACCTATAAGAGTGAATCAAAAATCCCAGTTGCTATAGAGCACACCAAGACTAATCTTGCGGAGATGCAACCCCTGGTTATGAACTTAACTGGGGAAGCACTTGATGCATTCAATGAGTCTTACGACGAATTGATGAAAATAAACGATGACTCGGAAGATGATGATGGTGATTCACCATTGGAGATGCAAGATAGCGGGATTCACCAAGAAGATTTATCTTCAACAAACAAAAGCTCACCTTGGAGCCATCACAAGGATGATTTCAAGGTGCAGGAGCAGGAGCTGCTAGACCTTATTGGTATTGAAGACGAAGAAGAAAAAAGCAGTGACTTTGTGAATGAAATGGAGAAGCAACTGATAAAGCAGATTGTTGAGAAAACAAAACAAGGGTCTCCTGTTGTGTTGAATGCACAGAAGATGCTATTTCTCATGGAAGAAACTGAACATAATCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

590

Amino Acids

66.27

Weight (kDa)

4.71

Isoelectric Point (pI)

59.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1149
AciI CCGC 5 cut(s) 385, 932, 1162, 1376, 1512
AclI AACGTT 1 cut(s) 84
AclWI GGATC 1 cut(s) 734
AcsI RAATTY 3 cut(s) 361, 961, 1025
AcuI CTGAAG 3 cut(s) 123, 489, 815
AdeI CACNNNGTG 1 cut(s) 1037
AfaI GTAC 1 cut(s) 538
AfiI CCNNNNNNNGG 5 cut(s) 307, 637, 1124, 1240, 1570
AflIII ACRYGT 1 cut(s) 849
AjiI CACGTC 1 cut(s) 1187
AjnI CCWGG 2 cut(s) 127, 1389
AjuI GAANNNNNNNTTGG 4 cut(s) 165, 197, 576, 608
Alw21I GWGCWC 2 cut(s) 1212, 1359
Alw26I GTCTC 5 cut(s) 441, 971, 1144, 1208, 1713
AlwI GGATC 1 cut(s) 734
AlwNI CAGNNNCTG 2 cut(s) 26, 1600
Ama87I CYCGRG 3 cut(s) 293, 540, 1211
AoxI GGCC 1 cut(s) 515
ApeKI GCWGC 7 cut(s) 20, 29, 426, 560, 884, 1249, 1600
ApoI RAATTY 3 cut(s) 361, 961, 1025
ArsI GACNNNNNNTTYG 2 cut(s) 1691, 1723
AseI ATTAAT 1 cut(s) 398
AsuC2I CCSGG 2 cut(s) 302, 633
AsuHPI GGTGA 9 cut(s) 359, 486, 710, 1049, 1134, 1482, 1496, 1511, 1545
AvaI CYCGRG 3 cut(s) 293, 540, 1211
BaeI ACNNNNGTAYC 2 cut(s) 528, 561
BanII GRGCYC 1 cut(s) 1212
BbsI GAAGAC 2 cut(s) 636, 1629
Bbv12I GWGCWC 2 cut(s) 1212, 1359
BbvI GCAGC 7 cut(s) 16, 32, 413, 547, 896, 1261, 1587
BccI CCATC 8 cut(s) 200, 301, 412, 499, 527, 997, 1475, 1572
BciT130I CCWGG 2 cut(s) 129, 1391
BcnI CCSGG 2 cut(s) 302, 633
BcoDI GTCTC 5 cut(s) 441, 971, 1144, 1208, 1713
BfaI CTAG 5 cut(s) 480, 695, 947, 1253, 1604
BfmI CTRYAG 2 cut(s) 561, 1350
BisI GCNGC 7 cut(s) 21, 30, 427, 561, 885, 1250, 1601
BlpI GCTNAGC 3 cut(s) 48, 140, 578
BlsI GCNGC 7 cut(s) 22, 31, 428, 562, 886, 1251, 1602
Bme1390I CCNGG 4 cut(s) 129, 302, 633, 1391
BmeT110I CYCGRG 3 cut(s) 293, 540, 1211
BmgBI CACGTC 1 cut(s) 1187
BmiI GGNNCC 2 cut(s) 1008, 1562
BmrFI CCNGG 4 cut(s) 129, 302, 633, 1391
BmrI ACTGGG 3 cut(s) 323, 1337, 1416
BmsI GCATC 9 cut(s) 211, 233, 279, 691, 747, 1371, 1411, 1491, 1725
BmuI ACTGGG 3 cut(s) 323, 1337, 1416
BpiI GAAGAC 2 cut(s) 636, 1629
Bpu10I CCTNAGC 1 cut(s) 244
Bpu1102I GCTNAGC 3 cut(s) 48, 140, 578
BpuEI CTTGAG 2 cut(s) 857, 1211
BpuMI CCSGG 2 cut(s) 302, 633
BsaBI GATNNNNATC 1 cut(s) 737
BsaI GGTCTC 1 cut(s) 1713
BsaJI CCNNGG 3 cut(s) 631, 1389, 1556
Bsc4I CCNNNNNNNGG 5 cut(s) 307, 637, 1124, 1240, 1570
Bse1I ACTGG 4 cut(s) 318, 330, 1343, 1411
Bse8I GATNNNNATC 1 cut(s) 737
BseBI CCWGG 2 cut(s) 129, 1391
BseDI CCNNGG 3 cut(s) 631, 1389, 1556
BseGI GGATG 3 cut(s) 10, 193, 1579
BseJI GATNNNNATC 1 cut(s) 737
BseLI CCNNNNNNNGG 5 cut(s) 307, 637, 1124, 1240, 1570
BseMII CTCAG 7 cut(s) 258, 569, 610, 879, 1034, 1074, 1110
BseNI ACTGG 4 cut(s) 318, 330, 1343, 1411
BseRI GAGGAG 1 cut(s) 114
BseXI GCAGC 7 cut(s) 16, 32, 413, 547, 896, 1261, 1587
BsgI GTGCAG 2 cut(s) 1203, 1607
Bsh1236I CGCG 1 cut(s) 1149
BshFI GGCC 1 cut(s) 517
BsiHKAI GWGCWC 2 cut(s) 1212, 1359
BsiHKCI CYCGRG 3 cut(s) 293, 540, 1211
BsiSI CCGG 3 cut(s) 302, 633, 1010
BslFI GGGAC 2 cut(s) 331, 614
BslI CCNNNNNNNGG 5 cut(s) 307, 637, 1124, 1240, 1570
BsmAI GTCTC 5 cut(s) 441, 971, 1144, 1208, 1713
BsmFI GGGAC 2 cut(s) 331, 614
BsmI GAATGC 2 cut(s) 1424, 1729
BsnI GGCC 1 cut(s) 517
Bso31I GGTCTC 1 cut(s) 1713
BsoBI CYCGRG 3 cut(s) 293, 540, 1211
Bsp1286I GDGCHC 2 cut(s) 1212, 1359
Bsp143I GATC 2 cut(s) 726, 1051
Bsp1720I GCTNAGC 3 cut(s) 48, 140, 578
Bsp68I TCGCGA 1 cut(s) 1149
BspACI CCGC 5 cut(s) 385, 932, 1162, 1376, 1512
BspANI GGCC 1 cut(s) 517
BspCNI CTCAG 7 cut(s) 257, 570, 609, 880, 1035, 1075, 1111
BspFNI CGCG 1 cut(s) 1149
BspLI GGNNCC 2 cut(s) 1008, 1562
BspMAI CTGCAG 1 cut(s) 565
BspPI GGATC 1 cut(s) 734
BspQI GCTCTTC 1 cut(s) 665
BspTNI GGTCTC 1 cut(s) 1713
BsrI ACTGG 4 cut(s) 318, 330, 1343, 1411
BssECI CCNNGG 3 cut(s) 631, 1389, 1556
BssMI GATC 2 cut(s) 726, 1051
BssT1I CCWWGG 1 cut(s) 1556
Bst2UI CCWGG 2 cut(s) 129, 1391
Bst4CI ACNGT 1 cut(s) 357
Bst6I CTCTTC 1 cut(s) 665
BstAPI GCANNNNNTGC 3 cut(s) 26, 1421, 1600
BstC8I GCNNGC 3 cut(s) 137, 760, 1160
BstDEI CTNAG 9 cut(s) 48, 140, 244, 578, 596, 888, 1043, 1083, 1119
BstENI CCTNNNNNAGG 1 cut(s) 1122
BstF5I GGATG 3 cut(s) 10, 193, 1579
BstFNI CGCG 1 cut(s) 1149
BstKTI GATC 2 cut(s) 729, 1054
BstMAI GTCTC 5 cut(s) 441, 971, 1144, 1208, 1713
BstMBI GATC 2 cut(s) 726, 1051
BstMWI GCNNNNNNNGC 8 cut(s) 26, 29, 141, 391, 764, 1155, 1421, 1600
BstNI CCWGG 2 cut(s) 129, 1391
BstSCI CCNGG 4 cut(s) 127, 300, 631, 1389
BstSFI CTRYAG 2 cut(s) 561, 1350
BstUI CGCG 1 cut(s) 1149
BstV1I GCAGC 7 cut(s) 16, 32, 413, 547, 896, 1261, 1587
BstV2I GAAGAC 2 cut(s) 636, 1629
BstX2I RGATCY 1 cut(s) 726
BstYI RGATCY 1 cut(s) 726
BsuRI GGCC 1 cut(s) 517
BtrI CACGTC 1 cut(s) 1187
BtsCI GGATG 3 cut(s) 10, 193, 1579
BtsI GCAGTG 1 cut(s) 1648
BtsIMutI CAGTG 4 cut(s) 337, 528, 604, 1648
BtuMI TCGCGA 1 cut(s) 1149
Cac8I GCNNGC 3 cut(s) 137, 760, 1160
CaiI CAGNNNCTG 2 cut(s) 26, 1600
Csp6I GTAC 1 cut(s) 537
CviAII CATG 8 cut(s) 475, 689, 742, 818, 958, 1258, 1284, 1747
CviQI GTAC 1 cut(s) 537
DdeI CTNAG 9 cut(s) 48, 140, 244, 578, 596, 888, 1043, 1083, 1119
DpnI GATC 2 cut(s) 728, 1053
DpnII GATC 2 cut(s) 726, 1051
DraIII CACNNNGTG 1 cut(s) 1037
Eam1104I CTCTTC 1 cut(s) 665
EarI CTCTTC 1 cut(s) 665
Ecl136II GAGCTC 1 cut(s) 1210
Eco130I CCWWGG 1 cut(s) 1556
Eco24I GRGCYC 1 cut(s) 1212
Eco31I GGTCTC 1 cut(s) 1713
Eco53kI GAGCTC 1 cut(s) 1210
Eco57I CTGAAG 3 cut(s) 123, 489, 815
Eco88I CYCGRG 3 cut(s) 293, 540, 1211
EcoICRI GAGCTC 1 cut(s) 1210
EcoNI CCTNNNNNAGG 1 cut(s) 1122
EcoRI GAATTC 2 cut(s) 361, 961
EcoRII CCWGG 2 cut(s) 127, 1389
EcoT14I CCWWGG 1 cut(s) 1556
EcoT22I ATGCAT 2 cut(s) 226, 1426
EcoT38I GRGCYC 1 cut(s) 1212
ErhI CCWWGG 1 cut(s) 1556
FaeI CATG 8 cut(s) 478, 692, 745, 821, 961, 1261, 1287, 1750
FalI AAGNNNNNCTT 8 cut(s) 819, 851, 909, 941, 921, 953, 1540, 1572
FaqI GGGAC 2 cut(s) 331, 614
FatI CATG 8 cut(s) 474, 688, 741, 817, 957, 1257, 1283, 1746
FauI CCCGC 1 cut(s) 1505
Fnu4HI GCNGC 7 cut(s) 21, 30, 427, 561, 885, 1250, 1601
FokI GGATG 3 cut(s) 17, 200, 1586
FriOI GRGCYC 1 cut(s) 1212
Fsp4HI GCNGC 7 cut(s) 21, 30, 427, 561, 885, 1250, 1601
FspBI CTAG 5 cut(s) 480, 695, 947, 1253, 1604
GluI GCNGC 7 cut(s) 21, 30, 427, 561, 885, 1250, 1601
HaeIII GGCC 1 cut(s) 517
HapII CCGG 3 cut(s) 302, 633, 1010
Hin1II CATG 8 cut(s) 478, 692, 745, 821, 961, 1261, 1287, 1750
HpaII CCGG 3 cut(s) 302, 633, 1010
HphI GGTGA 9 cut(s) 359, 486, 710, 1049, 1134, 1482, 1496, 1511, 1545
Hpy166II GTNNAC 1 cut(s) 1040
Hpy188I TCNGA 7 cut(s) 103, 205, 271, 898, 991, 1267, 1471
Hpy8I GTNNAC 1 cut(s) 1040
Hpy99I CGWCG 1 cut(s) 1445
HpyAV CCTTC 2 cut(s) 856, 1234
HpyCH4III ACNGT 1 cut(s) 357
HpyCH4IV ACGT 3 cut(s) 84, 851, 1186
HpyF10VI GCNNNNNNNGC 8 cut(s) 26, 29, 141, 391, 764, 1155, 1421, 1600
HpyF3I CTNAG 9 cut(s) 48, 140, 244, 578, 596, 888, 1043, 1083, 1119
HpySE526I ACGT 3 cut(s) 84, 851, 1186
Hsp92II CATG 8 cut(s) 478, 692, 745, 821, 961, 1261, 1287, 1750
Kzo9I GATC 2 cut(s) 726, 1051
LguI GCTCTTC 1 cut(s) 665
LmnI GCTCC 4 cut(s) 1006, 1560, 1591, 1597
Lsp1109I GCAGC 7 cut(s) 16, 32, 413, 547, 896, 1261, 1587
LweI GCATC 9 cut(s) 211, 233, 279, 691, 747, 1371, 1411, 1491, 1725
MaeI CTAG 5 cut(s) 480, 695, 947, 1253, 1604
MaeII ACGT 3 cut(s) 84, 851, 1186
MaeIII GTNAC 6 cut(s) 64, 347, 526, 714, 1106, 1643
MalI GATC 2 cut(s) 728, 1053
MboI GATC 2 cut(s) 726, 1051
MflI RGATCY 1 cut(s) 726
MhlI GDGCHC 2 cut(s) 1212, 1359
MluCI AATT 8 cut(s) 361, 546, 951, 961, 1025, 1151, 1180, 1445
MlyI GAGTC 8 cut(s) 165, 636, 650, 978, 1094, 1130, 1442, 1460
MmeI TCCRAC 2 cut(s) 993, 1113
MnlI CCTC 6 cut(s) 135, 507, 757, 976, 1012, 1155
Mph1103I ATGCAT 2 cut(s) 226, 1426
MseI TTAA 7 cut(s) 14, 398, 431, 617, 954, 1059, 1403
MslI CAYNNNNRTG 1 cut(s) 1572
MspA1I CMGCKG 2 cut(s) 385, 887
MspI CCGG 3 cut(s) 302, 633, 1010
MspR9I CCNGG 4 cut(s) 129, 302, 633, 1391
Mva1269I GAATGC 2 cut(s) 1424, 1729
MvaI CCWGG 2 cut(s) 129, 1391
MvnI CGCG 1 cut(s) 1149
MwoI GCNNNNNNNGC 8 cut(s) 26, 29, 141, 391, 764, 1155, 1421, 1600
NciI CCSGG 2 cut(s) 302, 633
NdeII GATC 2 cut(s) 726, 1051
NlaIII CATG 8 cut(s) 478, 692, 745, 821, 961, 1261, 1287, 1750
NlaIV GGNNCC 2 cut(s) 1008, 1562
NmuCI GTSAC 3 cut(s) 347, 526, 1643
NruI TCGCGA 1 cut(s) 1149
NsiI ATGCAT 2 cut(s) 226, 1426
PaeR7I CTCGAG 2 cut(s) 540, 1211
PciSI GCTCTTC 1 cut(s) 665
PctI GAATGC 2 cut(s) 1424, 1729
PfeI GAWTC 8 cut(s) 92, 119, 566, 899, 1262, 1331, 1487, 1516
PfoI TCCNGGA 1 cut(s) 300
PkrI GCNGC 7 cut(s) 22, 31, 428, 562, 886, 1251, 1602
PleI GAGTC 8 cut(s) 164, 635, 649, 978, 1093, 1129, 1441, 1460
PpsI GAGTC 8 cut(s) 164, 635, 649, 978, 1093, 1129, 1441, 1460
PshBI ATTAAT 1 cut(s) 398
Psp124BI GAGCTC 1 cut(s) 1212
Psp1406I AACGTT 1 cut(s) 84
Psp6I CCWGG 2 cut(s) 127, 1389
PspGI CCWGG 2 cut(s) 127, 1389
PspN4I GGNNCC 2 cut(s) 1008, 1562
PspXI VCTCGAGB 1 cut(s) 540
PstI CTGCAG 1 cut(s) 565
PstNI CAGNNNCTG 2 cut(s) 26, 1600
PsuI RGATCY 1 cut(s) 726
PvuII CAGCTG 1 cut(s) 887
RruI TCGCGA 1 cut(s) 1149
RsaI GTAC 1 cut(s) 538
RsaNI GTAC 1 cut(s) 537
RseI CAYNNNNRTG 1 cut(s) 1572
SacI GAGCTC 1 cut(s) 1212
SapI GCTCTTC 1 cut(s) 665
SaqAI TTAA 7 cut(s) 14, 398, 431, 617, 954, 1059, 1403
SatI GCNGC 7 cut(s) 21, 30, 427, 561, 885, 1250, 1601
Sau3AI GATC 2 cut(s) 726, 1051
SchI GAGTC 8 cut(s) 165, 636, 650, 978, 1094, 1130, 1442, 1460
ScrFI CCNGG 4 cut(s) 129, 302, 633, 1391
SduI GDGCHC 2 cut(s) 1212, 1359
SfaNI GCATC 9 cut(s) 211, 233, 279, 691, 747, 1371, 1411, 1491, 1725
SfcI CTRYAG 2 cut(s) 561, 1350
Sfr274I CTCGAG 2 cut(s) 540, 1211
SlaI CTCGAG 2 cut(s) 540, 1211
SmiMI CAYNNNNRTG 1 cut(s) 1572
SmlI CTYRAG 4 cut(s) 540, 836, 1190, 1211
SmoI CTYRAG 4 cut(s) 540, 836, 1190, 1211
Sse9I AATT 8 cut(s) 361, 546, 951, 961, 1025, 1151, 1180, 1445
SsiI CCGC 5 cut(s) 385, 932, 1162, 1376, 1512
SspI AATATT 1 cut(s) 913
SspMI CTAG 5 cut(s) 480, 695, 947, 1253, 1604
SstI GAGCTC 1 cut(s) 1212
StyD4I CCNGG 4 cut(s) 127, 300, 631, 1389
StyI CCWWGG 1 cut(s) 1556
TaaI ACNGT 1 cut(s) 357
TaiI ACGT 3 cut(s) 87, 854, 1189
TaqI TCGA 5 cut(s) 416, 541, 647, 731, 1212
TasI AATT 8 cut(s) 361, 546, 951, 961, 1025, 1151, 1180, 1445
TfiI GAWTC 8 cut(s) 92, 119, 566, 899, 1262, 1331, 1487, 1516
Tru1I TTAA 7 cut(s) 14, 398, 431, 617, 954, 1059, 1403
Tru9I TTAA 7 cut(s) 14, 398, 431, 617, 954, 1059, 1403
TscAI CASTG 4 cut(s) 337, 535, 604, 1648
TseFI GTSAC 3 cut(s) 347, 526, 1643
TseI GCWGC 7 cut(s) 20, 29, 426, 560, 884, 1249, 1600
Tsp45I GTSAC 3 cut(s) 347, 526, 1643
TspDTI ATGAA 9 cut(s) 186, 357, 434, 857, 974, 1092, 1412, 1466, 1671
TspGWI ACGGA 1 cut(s) 1213
TspRI CASTG 4 cut(s) 337, 535, 604, 1648
VspI ATTAAT 1 cut(s) 398
XagI CCTNNNNNAGG 1 cut(s) 1122
XapI RAATTY 3 cut(s) 361, 961, 1025
XcmI CCANNNNNNNNNTGG 1 cut(s) 1100
XhoI CTCGAG 2 cut(s) 540, 1211
XspI CTAG 5 cut(s) 480, 695, 947, 1253, 1604
Zsp2I ATGCAT 2 cut(s) 226, 1426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.