Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004415

Physical Location & Seq

Genomic Coordinates Reverse (-)

2606002 .. 2610250

Gene Structure 4249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G08130.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGATGTTCAATGCTAATGAGAGAAACGTTTTGGATGAGAATTCTAACTCTAATTGCAGCTCGTACGCCGCTGCATCAAGCGGGTTCACTCTGTGGGATGAATCTGCTTCTGGGAAGAAGGGACAGACAAGGAAGGAGAATAGTGTTGGGGAGAGAGTAAACATGAGAGCTGATGTTGCAGCAACTGTGGGACAATGGCCAGTGGCGGAGAGACGGTCCCAGTCTTTGACAAACAACCATATGAGCGGTTTCAGTTCTCTCTCTTCCTCTCAAGGGTCTGTGCTTAAGAGCCAGAGCTTCATGGACATGATAAGGTCAGCAAAAGGAAGTTCACAGGAAGATGATTTAGATGATGAAGAAGATTTTATCATGAAGAAAGAAAGCTCCTCGACTAGCCAGAGCCATAGAGTGGATTTGAGGGTAAAAGCAGATGTGAGAGGCTCTCCTAACGATCAAAAGCTGAACACACCTAGGTCTAAACATTCTGCTACAGAGCAACGGAGAAGGAGCAAGATCAATGATAGATTTCAGATGTTGAGACAACTAATACCTAACAGCGACCAAAAGCGGGATAAGGCCTCCTTCTTACTAGAGGTTATCGAGTATATTCAATTCTTACAAGAGAAAGCAGACAAGTATGTGACCTCTTACCAAGGATGGAATCACGAACCTGCGAAGCTATTGAATTGGCAGAGTAACAACAACCAACAGCTAGTACCTGAAGGAGTTGCTTTTGCTCCAAAATTGGAAGAAGAGAAAAACAACATTCCGGTTTCGGTCCTTGCAACTGCACAAGGTGTTGTTATTGATCATCCAACAACCGCGACGACCTCTCCATTTCCATTGTCGATTCAAAGCAACAGTTTTTTCTCTCCTGTGATTGCGGGTAATCCCGTACCCCAGTTCCACGCAAGAGTCGCATCATCAGAGGCTGTAGAGCCAAGTCCGAGTTCCCGGAGTCAAAAAGAAGAAGAAGATGAGGAAGTTCTTGAGGGTAACATCAGAATTTCAAGTGTTTACTCACAAGGATTAGTGAAAACACTGAGAGAAGCATTGGAGAATTCAGGAGTGGACTTAACGAAAGCAAGCATCTCCGTTGAAATCGAGCTCGCTAAACAATCCTCGTCTTCTTCCTTCAAGGATCATGAAGTTCGTGAACCGGTTTCTCGAACCAGAAACGACAATGTCAAGCAAACTCGGAAACCAAAACGGCTCAAGACGGGACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

409

Amino Acids

45.54

Weight (kDa)

6.7

Isoelectric Point (pI)

64.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	278 - 327	2.2e-16	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004415)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08130 AT5G08130 AT5G08130 AT5G08130 AT5G08130 AT5G08130 AT5G08130 AT5G08130
fragaria_vesca	FvH4_5g13341 FvH4_5g13341 FvH4_5g13341 FvH4_5g13341
malus_domestica	MD06G1206200.v1.1 MD14G1217100.v1.1
prunus_persica	Prupe.5G210500_v2.0.a1 Prupe.5G210500_v2.0.a1 Prupe.5G210500_v2.0.a1 Prupe.5G210500_v2.0.a1 Prupe.5G210500_v2.0.a1 Prupe.5G210500_v2.0.a1
pyrus_communis	pycom06g18410 pycom14g17980
rosa_chinensis	RchiOBHm_Chr7g0183781
rosa_laevigata	RLG00000005023
rosa_multiflora	Rmu_sc0003610.1_g000038
rosa_roxburghii	Rroxscaffold_3G00270210
rosa_rugosa	Rorug06G0460400
rosa_samantha	Rh7AG061000 Rh7BG061100 Rh7CG062700 Rh7DG061100
rosa_wichuraiana	Rw7G005070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	679
AccB7I	CCANNNNNTGG	1 cut(s)	409
AccBSI	CCGCTC	1 cut(s)	246
AccII	CGCG	1 cut(s)	824
AciI	CCGC	7 cut(s)	69, 81, 206, 246, 568, 822, 884
AclI	AACGTT	1 cut(s)	27
AclWI	GGATC	1 cut(s)	1149
AcoI	YGGCCR	1 cut(s)	197
AcsI	RAATTY	3 cut(s)	40, 1005, 1060
AcuI	CTGAAG	1 cut(s)	741
AdeI	CACNNNGTG	2 cut(s)	93, 797
AfaI	GTAC	3 cut(s)	65, 717, 897
AfiI	CCNNNNNNNGG	3 cut(s)	273, 409, 568
AflII	CTTAAG	1 cut(s)	284
AgeI	ACCGGT	1 cut(s)	1159
AgsI	TTSAA	7 cut(s)	10, 611, 685, 854, 1011, 1100, 1138
AjuI	GAANNNNNNNTTGG	2 cut(s)	934, 966
AluBI	AGCT	8 cut(s)	60, 170, 297, 384, 460, 679, 712, 1108
AluI	AGCT	8 cut(s)	60, 170, 297, 384, 460, 679, 712, 1108
Alw21I	GWGCWC	1 cut(s)	1110
Alw26I	GTCTC	2 cut(s)	205, 532
AlwI	GGATC	1 cut(s)	1149
AlwNI	CAGNNNCTG	2 cut(s)	185, 932
AoxI	GGCC	2 cut(s)	197, 576
ApeKI	GCWGC	3 cut(s)	57, 71, 179
ApoI	RAATTY	3 cut(s)	40, 1005, 1060
AsiGI	ACCGGT	1 cut(s)	1159
AspA2I	CCTAGG	1 cut(s)	470
AspS9I	GGNCC	2 cut(s)	216, 778
AsuC2I	CCSGG	1 cut(s)	955
AvaII	GGWCC	2 cut(s)	216, 778
AvrII	CCTAGG	1 cut(s)	470
BalI	TGGCCA	1 cut(s)	199
BanII	GRGCYC	1 cut(s)	1110
BbsI	GAAGAC	1 cut(s)	1119
Bbv12I	GWGCWC	1 cut(s)	1110
BbvI	GCAGC	3 cut(s)	58, 69, 191
BccI	CCATC	1 cut(s)	651
BceAI	ACGGC	1 cut(s)	1226
BclI	TGATCA	1 cut(s)	808
BcnI	CCSGG	1 cut(s)	955
BcoDI	GTCTC	2 cut(s)	205, 532
BfaI	CTAG	4 cut(s)	393, 471, 590, 713
BfmI	CTRYAG	2 cut(s)	489, 933
BfrI	CTTAAG	1 cut(s)	284
BfuAI	ACCTGC	1 cut(s)	679
BisI	GCNGC	4 cut(s)	58, 69, 72, 180
BlnI	CCTAGG	1 cut(s)	470
BlsI	GCNGC	4 cut(s)	59, 70, 73, 181
Bme1390I	CCNGG	1 cut(s)	955
Bme18I	GGWCC	2 cut(s)	216, 778
BmgT120I	GGNCC	2 cut(s)	216, 778
BmiI	GGNNCC	1 cut(s)	218
BmrFI	CCNGG	1 cut(s)	955
BmrI	ACTGGG	2 cut(s)	214, 895
BmsI	GCATC	3 cut(s)	83, 929, 1098
BmuI	ACTGGG	2 cut(s)	214, 895
BpiI	GAAGAC	1 cut(s)	1119
BplI	GAGNNNNNCTC	2 cut(s)	427, 459
BpuEI	CTTGAG	3 cut(s)	255, 1010, 1199
BpuMI	CCSGG	1 cut(s)	955
BsaJI	CCNNGG	2 cut(s)	470, 652
BsaWI	WCCGGW	2 cut(s)	769, 1159
BsaXI	ACNNNNNCTCC	4 cut(s)	200, 230, 817, 847
Bsc4I	CCNNNNNNNGG	3 cut(s)	273, 409, 568
Bse118I	RCCGGY	1 cut(s)	1159
Bse1I	ACTGG	3 cut(s)	200, 220, 901
BseDI	CCNNGG	2 cut(s)	470, 652
BseGI	GGATG	4 cut(s)	40, 103, 662, 811
BseLI	CCNNNNNNNGG	3 cut(s)	273, 409, 568
BseMII	CTCAG	1 cut(s)	1034
BseNI	ACTGG	3 cut(s)	200, 220, 901
BseRI	GAGGAG	1 cut(s)	376
BseXI	GCAGC	3 cut(s)	58, 69, 191
BsgI	GTGCAG	1 cut(s)	774
Bsh1236I	CGCG	1 cut(s)	824
BshFI	GGCC	2 cut(s)	199, 578
BshTI	ACCGGT	1 cut(s)	1159
BsiHKAI	GWGCWC	1 cut(s)	1110
BsiSI	CCGG	3 cut(s)	770, 955, 1160
BsiWI	CGTACG	1 cut(s)	63
BslFI	GGGAC	3 cut(s)	135, 202, 204
BslI	CCNNNNNNNGG	3 cut(s)	273, 409, 568
BsmAI	GTCTC	2 cut(s)	205, 532
BsmBI	CGTCTC	1 cut(s)	205
BsmFI	GGGAC	3 cut(s)	135, 202, 204
BsnI	GGCC	2 cut(s)	199, 578
Bsp1286I	GDGCHC	1 cut(s)	1110
Bsp143I	GATC	4 cut(s)	451, 513, 808, 1141
BspACI	CCGC	7 cut(s)	69, 81, 206, 246, 568, 822, 884
BspANI	GGCC	2 cut(s)	199, 578
BspCNI	CTCAG	1 cut(s)	1035
BspFNI	CGCG	1 cut(s)	824
BspHI	TCATGA	2 cut(s)	369, 1144
BspLI	GGNNCC	1 cut(s)	218
BspMI	ACCTGC	1 cut(s)	679
BspPI	GGATC	1 cut(s)	1149
BspTI	CTTAAG	1 cut(s)	284
BsrBI	CCGCTC	1 cut(s)	246
BsrFI	RCCGGY	1 cut(s)	1159
BsrI	ACTGG	3 cut(s)	200, 220, 901
BssAI	RCCGGY	1 cut(s)	1159
BssECI	CCNNGG	2 cut(s)	470, 652
BssMI	GATC	4 cut(s)	451, 513, 808, 1141
BssT1I	CCWWGG	2 cut(s)	470, 652
Bst4CI	ACNGT	4 cut(s)	187, 216, 863, 1227
Bst6I	CTCTTC	2 cut(s)	268, 747
BstAFI	CTTAAG	1 cut(s)	284
BstC8I	GCNNGC	2 cut(s)	1087, 1110
BstDEI	CTNAG	1 cut(s)	1043
BstF5I	GGATG	4 cut(s)	40, 103, 662, 811
BstFNI	CGCG	1 cut(s)	824
BstKTI	GATC	4 cut(s)	454, 516, 811, 1144
BstMAI	GTCTC	2 cut(s)	205, 532
BstMBI	GATC	4 cut(s)	451, 513, 808, 1141
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 917
BstSCI	CCNGG	1 cut(s)	953
BstSFI	CTRYAG	2 cut(s)	489, 933
BstUI	CGCG	1 cut(s)	824
BstV1I	GCAGC	3 cut(s)	58, 69, 191
BstV2I	GAAGAC	1 cut(s)	1119
BsuRI	GGCC	2 cut(s)	199, 578
BtsCI	GGATG	4 cut(s)	40, 103, 662, 811
BtsIMutI	CAGTG	2 cut(s)	207, 1040
BveI	ACCTGC	1 cut(s)	679
Cac8I	GCNNGC	2 cut(s)	1087, 1110
CaiI	CAGNNNCTG	2 cut(s)	185, 932
CciI	TCATGA	2 cut(s)	369, 1144
Cfr10I	RCCGGY	1 cut(s)	1159
Cfr13I	GGNCC	2 cut(s)	216, 778
Csp6I	GTAC	3 cut(s)	64, 716, 896
CspAI	ACCGGT	1 cut(s)	1159
CviAII	CATG	5 cut(s)	163, 301, 307, 370, 1145
CviQI	GTAC	3 cut(s)	64, 716, 896
DdeI	CTNAG	1 cut(s)	1043
DpnI	GATC	4 cut(s)	453, 515, 810, 1143
DpnII	GATC	4 cut(s)	451, 513, 808, 1141
DraIII	CACNNNGTG	2 cut(s)	93, 797
EaeI	YGGCCR	1 cut(s)	197
Eam1104I	CTCTTC	2 cut(s)	268, 747
EarI	CTCTTC	2 cut(s)	268, 747
EciI	GGCGGA	1 cut(s)	221
Ecl136II	GAGCTC	1 cut(s)	1108
Eco130I	CCWWGG	2 cut(s)	470, 652
Eco147I	AGGCCT	1 cut(s)	578
Eco24I	GRGCYC	1 cut(s)	1110
Eco47I	GGWCC	2 cut(s)	216, 778
Eco53kI	GAGCTC	1 cut(s)	1108
Eco57I	CTGAAG	1 cut(s)	741
EcoICRI	GAGCTC	1 cut(s)	1108
EcoRI	GAATTC	2 cut(s)	40, 1060
EcoT14I	CCWWGG	2 cut(s)	470, 652
EcoT38I	GRGCYC	1 cut(s)	1110
ErhI	CCWWGG	2 cut(s)	470, 652
Esp3I	CGTCTC	1 cut(s)	205
FaeI	CATG	5 cut(s)	166, 304, 310, 373, 1148
FalI	AAGNNNNNCTT	2 cut(s)	566, 598
FaqI	GGGAC	3 cut(s)	135, 202, 204
FatI	CATG	5 cut(s)	162, 300, 306, 369, 1144
FauI	CCCGC	3 cut(s)	74, 561, 877
FauNDI	CATATG	1 cut(s)	240
FbaI	TGATCA	1 cut(s)	808
Fnu4HI	GCNGC	4 cut(s)	58, 69, 72, 180
FokI	GGATG	4 cut(s)	47, 110, 669, 798
FriOI	GRGCYC	1 cut(s)	1110
Fsp4HI	GCNGC	4 cut(s)	58, 69, 72, 180
FspBI	CTAG	4 cut(s)	393, 471, 590, 713
GluI	GCNGC	4 cut(s)	58, 69, 72, 180
HaeIII	GGCC	2 cut(s)	199, 578
HapII	CCGG	3 cut(s)	770, 955, 1160
Hin1II	CATG	5 cut(s)	166, 304, 310, 373, 1148
HinfI	GANTC	5 cut(s)	101, 661, 850, 915, 958
HpaII	CCGG	3 cut(s)	770, 955, 1160
Hpy166II	GTNNAC	6 cut(s)	87, 160, 332, 1018, 1072, 1157
Hpy188I	TCNGA	5 cut(s)	531, 928, 948, 1004, 1200
Hpy188III	TCNNGA	8 cut(s)	370, 665, 989, 1065, 1145, 1154, 1167, 1216
Hpy8I	GTNNAC	6 cut(s)	87, 160, 332, 1018, 1072, 1157
Hpy99I	CGWCG	1 cut(s)	829
HpyAV	CCTTC	6 cut(s)	112, 127, 498, 592, 716, 1144
HpyCH4III	ACNGT	4 cut(s)	187, 216, 863, 1227
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	5 cut(s)	57, 74, 179, 785, 791
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 917
HpyF3I	CTNAG	1 cut(s)	1043
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	5 cut(s)	166, 304, 310, 373, 1148
Ksp22I	TGATCA	1 cut(s)	808
Kzo9I	GATC	4 cut(s)	451, 513, 808, 1141
LmnI	GCTCC	3 cut(s)	389, 507, 742
Lsp1109I	GCAGC	3 cut(s)	58, 69, 191
LweI	GCATC	3 cut(s)	83, 929, 1098
MaeI	CTAG	4 cut(s)	393, 471, 590, 713
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	3 cut(s)	640, 695, 995
MalI	GATC	4 cut(s)	453, 515, 810, 1143
MbiI	CCGCTC	1 cut(s)	246
MboI	GATC	4 cut(s)	451, 513, 808, 1141
MhlI	GDGCHC	1 cut(s)	1110
MlsI	TGGCCA	1 cut(s)	199
MluCI	AATT	7 cut(s)	40, 52, 611, 685, 743, 1005, 1060
MluNI	TGGCCA	1 cut(s)	199
MlyI	GAGTC	2 cut(s)	924, 967
MmeI	TCCRAC	1 cut(s)	839
Mox20I	TGGCCA	1 cut(s)	199
MscI	TGGCCA	1 cut(s)	199
MseI	TTAA	2 cut(s)	285, 1076
MslI	CAYNNNNRTG	1 cut(s)	305
Msp20I	TGGCCA	1 cut(s)	199
MspA1I	CMGCKG	1 cut(s)	71
MspCI	CTTAAG	1 cut(s)	284
MspI	CCGG	3 cut(s)	770, 955, 1160
MspR9I	CCNGG	1 cut(s)	955
MvnI	CGCG	1 cut(s)	824
MwoI	GCNNNNNNNGC	2 cut(s)	176, 917
NciI	CCSGG	1 cut(s)	955
NdeI	CATATG	1 cut(s)	240
NdeII	GATC	4 cut(s)	451, 513, 808, 1141
NlaIII	CATG	5 cut(s)	166, 304, 310, 373, 1148
NlaIV	GGNNCC	1 cut(s)	218
NmuCI	GTSAC	1 cut(s)	640
PagI	TCATGA	2 cut(s)	369, 1144
PceI	AGGCCT	1 cut(s)	578
PfeI	GAWTC	3 cut(s)	101, 661, 850
Pfl23II	CGTACG	1 cut(s)	63
PflFI	GACNNNGTC	1 cut(s)	1184
PflMI	CCANNNNNTGG	1 cut(s)	409
PfoI	TCCNGGA	1 cut(s)	953
PinAI	ACCGGT	1 cut(s)	1159
PkrI	GCNGC	4 cut(s)	59, 70, 73, 181
PleI	GAGTC	2 cut(s)	923, 966
PpsI	GAGTC	2 cut(s)	923, 966
Psp124BI	GAGCTC	1 cut(s)	1110
Psp1406I	AACGTT	1 cut(s)	27
PspLI	CGTACG	1 cut(s)	63
PspN4I	GGNNCC	1 cut(s)	218
PspPI	GGNCC	2 cut(s)	216, 778
PstNI	CAGNNNCTG	2 cut(s)	185, 932
PsyI	GACNNNGTC	1 cut(s)	1184
RsaI	GTAC	3 cut(s)	65, 717, 897
RsaNI	GTAC	3 cut(s)	64, 716, 896
RseI	CAYNNNNRTG	1 cut(s)	305
SacI	GAGCTC	1 cut(s)	1110
SaqAI	TTAA	2 cut(s)	285, 1076
SatI	GCNGC	4 cut(s)	58, 69, 72, 180
Sau3AI	GATC	4 cut(s)	451, 513, 808, 1141
Sau96I	GGNCC	2 cut(s)	216, 778
SchI	GAGTC	2 cut(s)	924, 967
ScrFI	CCNGG	1 cut(s)	955
SduI	GDGCHC	1 cut(s)	1110
SfaNI	GCATC	3 cut(s)	83, 929, 1098
SfcI	CTRYAG	2 cut(s)	489, 933
SinI	GGWCC	2 cut(s)	216, 778
SmiMI	CAYNNNNRTG	1 cut(s)	305
SmlI	CTYRAG	4 cut(s)	270, 284, 989, 1214
SmoI	CTYRAG	4 cut(s)	270, 284, 989, 1214
Sse9I	AATT	7 cut(s)	40, 52, 611, 685, 743, 1005, 1060
SseBI	AGGCCT	1 cut(s)	578
SsiI	CCGC	7 cut(s)	69, 81, 206, 246, 568, 822, 884
SspMI	CTAG	4 cut(s)	393, 471, 590, 713
SstI	GAGCTC	1 cut(s)	1110
StuI	AGGCCT	1 cut(s)	578
StyD4I	CCNGG	1 cut(s)	953
StyI	CCWWGG	2 cut(s)	470, 652
TaaI	ACNGT	4 cut(s)	187, 216, 863, 1227
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	5 cut(s)	389, 600, 848, 1104, 1168
TaqII	GACCGA	1 cut(s)	766
TasI	AATT	7 cut(s)	40, 52, 611, 685, 743, 1005, 1060
TauI	GCSGC	1 cut(s)	71
TfiI	GAWTC	3 cut(s)	101, 661, 850
Tru1I	TTAA	2 cut(s)	285, 1076
Tru9I	TTAA	2 cut(s)	285, 1076
TscAI	CASTG	2 cut(s)	207, 1047
TseFI	GTSAC	1 cut(s)	640
TseI	GCWGC	3 cut(s)	57, 71, 179
Tsp45I	GTSAC	1 cut(s)	640
TspDTI	ATGAA	5 cut(s)	114, 289, 369, 386, 1161
TspGWI	ACGGA	2 cut(s)	514, 1084
TspRI	CASTG	2 cut(s)	207, 1047
Tth111I	GACNNNGTC	1 cut(s)	1184
Van91I	CCANNNNNTGG	1 cut(s)	409
Vha464I	CTTAAG	1 cut(s)	284
VpaK11BI	GGWCC	2 cut(s)	216, 778
XapI	RAATTY	3 cut(s)	40, 1005, 1060
XmaJI	CCTAGG	1 cut(s)	470
XspI	CTAG	4 cut(s)	393, 471, 590, 713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.