Rh7BG061100

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0004415
Physical Location & Seq
Reverse (-)
4083509 .. 4089088
5580 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG061100.1

Sequence Viewer

Length: 1485 bp
ATGGAGCTGCCACAGCCCCGTCCGTTTGGAGGAGGCCAAGGAGGAAGAAAACCAACGCATGACTTTCTGTCGTTGTACACTAGTCATTCAAATGCCCAACAAGATCCAATACCACCTTCTCAAGGAGGTTATCTTGAAACTCATGATTTTCTACAACCACTTGAACGAATGGGAAAGACCTGTGCCAAAGAAGAAACCTCGGTTGAGATCATATCACCAAGTAGAAGTAGTGTTGAAAAGCCGCCATGTGTGGCGCAACGGCCAACTTCTGTGGAGCACATTCTTCCCGGTGGGATTGGGACTTACAGTATAAGCCACATTTCGTATTTTAATCAAAGGGTTCCAAAACCAGAGGAAAACGTATTCCCGGTTGCTCCTCAAGCAAGTAGTACCCATGAAAGGAATGATGAAAACTCAAACTGCAGTTCTTATGCCGGAAGTGGTTTCACTTTGTGGGACGAATCTGCAGCAATGAAGGGAAAGACAGGGAAGGAGAATGTGGTGGAAAGACCAGGTTTAAGAGGGCAATGGACGTCGTCAGAGAGGCCATCACAGTCATCTTCCACTAACAACCGCAACTGCTTCAGCTCTCAGTCATCTGGGCAGAAGAACCTGAGCTTCATGGAGATGATGAAGTCCGCTGCCAAGGGTTGCACCCAGGAAGAAGAACTTGACGATGAGGAAGAGTTTGCTCTGAAAAAGGAGATGTCCACTACTACTACCACTGCCACTACCCCCTACAACGGAGAATTACGGGTTAAGGTTGATGTTAAGAGCTCTGATCAGAAAGCTAACACGCCACGATCCAAACATTCTGCCACTGAACAGCGAAGGAGGAGTAAAATAAATGACAGATTCCAAATGTTGAGAGAGCTCATTCCTCATAGTGATCAAAAGAGAGACAAGGCATCATTTCTATTAGAGGTTATCGAATACATTCAGTATTTACAGGAAAAAGTAACCAAGTATGAGGGTCCATACCAAGGTTGGAACCATGATCCAGCAAAATTGATGCCTTGGGGAAACAACAAGCTTGGGGAAAGTTACTGTGATCAATCTCGAGGTATGAATGGTGGATCTGCTCCTGCATTAGTGTTTGCTGCTGCAAAATTTGAGGAGAAAACTACTTCAGTGTCTCCTACTATTCCTGGAAGTGCTCAGAACCTGGTAGAATCTGATACGAGTACTGAAACTACATTCAGAGGTAAGGATTACCCCAATGGAATAACAAACAAGGCAAATCCCTTTCCTCTGTCAATGCAGTCGAACTTCTCGACACCTGTCAGAAGTGGTAGTGCAGCACCTCATCTTCCACCTAGATTGCCATCTGATGCAGAGAACACATCATCTCATCCTCGCTCCATGTTATTCCCGACAAAATCATGTACTGCTGATGCTGGTGCCATTAGTGATAAGCTAAAAGAACATGAACTTACAATTGAAGGTGGAAGAATTAACATCTCAAGTGCGTACTCTCAAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

494

Amino Acids

54.35

Weight (kDa)

6.49

Isoelectric Point (pI)

56.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 268 - 317 1.7e-16 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 536
AccB1I GGYRCC 1 cut(s) 1400
AciI CCGC 3 cut(s) 242, 574, 639
AclWI GGATC 4 cut(s) 98, 798, 992, 1084
AcoI YGGCCR 1 cut(s) 260
AcsI RAATTY 1 cut(s) 1109
AcuI CTGAAG 2 cut(s) 568, 1113
AcyI GRCGYC 1 cut(s) 533
AdeI CACNNNGTG 1 cut(s) 453
AfaI GTAC 5 cut(s) 77, 391, 1186, 1387, 1472
AfiI CCNNNNNNNGG 5 cut(s) 29, 122, 399, 743, 983
AgsI TTSAA 5 cut(s) 90, 137, 164, 236, 1442
AhdI GACNNNNNGTC 1 cut(s) 67
AhlI ACTAGT 1 cut(s) 80
AjnI CCWGG 4 cut(s) 511, 657, 1147, 1164
AjuI GAANNNNNNNTTGG 2 cut(s) 100, 132
AluBI AGCT 8 cut(s) 7, 588, 618, 777, 791, 874, 1033, 1417
AluI AGCT 8 cut(s) 7, 588, 618, 777, 791, 874, 1033, 1417
Alw21I GWGCWC 4 cut(s) 279, 779, 876, 1159
Alw26I GTCTC 2 cut(s) 894, 1140
AlwI GGATC 4 cut(s) 98, 798, 992, 1084
AlwNI CAGNNNCTG 1 cut(s) 1165
Ama87I CYCGRG 1 cut(s) 1059
AoxI GGCC 3 cut(s) 34, 260, 545
ApeKI GCWGC 6 cut(s) 7, 467, 641, 1100, 1103, 1298
ApoI RAATTY 1 cut(s) 1109
Asp700I GAANNNNTTC 1 cut(s) 936
AspLEI GCGC 1 cut(s) 256
AspS9I GGNCC 1 cut(s) 974
AsuC2I CCSGG 2 cut(s) 288, 368
AsuHPI GGTGA 1 cut(s) 207
AvaI CYCGRG 1 cut(s) 1059
AvaII GGWCC 1 cut(s) 974
BanI GGYRCC 1 cut(s) 1400
BanII GRGCYC 2 cut(s) 779, 876
Bbv12I GWGCWC 4 cut(s) 279, 779, 876, 1159
BbvI GCAGC 5 cut(s) 479, 628, 1087, 1090, 1310
BccI CCATC 2 cut(s) 556, 1333
BceAI ACGGC 1 cut(s) 275
BciT130I CCWGG 4 cut(s) 513, 659, 1149, 1166
BclI TGATCA 3 cut(s) 781, 889, 1051
BcnI CCSGG 2 cut(s) 288, 368
BcoDI GTCTC 2 cut(s) 894, 1140
BcuI ACTAGT 1 cut(s) 80
BfaI CTAG 2 cut(s) 81, 1317
BfmI CTRYAG 2 cut(s) 421, 465
BisI GCNGC 7 cut(s) 8, 242, 468, 642, 1101, 1104, 1299
BlsI GCNGC 7 cut(s) 9, 243, 469, 643, 1102, 1105, 1300
BmcAI AGTACT 1 cut(s) 1186
Bme1390I CCNGG 6 cut(s) 288, 368, 513, 659, 1149, 1166
Bme18I GGWCC 1 cut(s) 974
BmeRI GACNNNNNGTC 1 cut(s) 67
BmeT110I CYCGRG 1 cut(s) 1059
BmgT120I GGNCC 1 cut(s) 974
BmiI GGNNCC 4 cut(s) 342, 975, 992, 1402
BmrFI CCNGG 6 cut(s) 288, 368, 513, 659, 1149, 1166
BmsI GCATC 4 cut(s) 917, 1002, 1321, 1384
BoxI GACNNNNGTC 1 cut(s) 1280
Bpu10I CCTNAGC 1 cut(s) 614
BpuEI CTTGAG 4 cut(s) 105, 363, 1447, 1461
BpuMI CCSGG 2 cut(s) 288, 368
BsaBI GATNNNNATC 1 cut(s) 1324
BsaHI GRCGYC 1 cut(s) 533
BsaJI CCNNGG 6 cut(s) 37, 198, 645, 657, 982, 1016
Bsc4I CCNNNNNNNGG 5 cut(s) 29, 122, 399, 743, 983
Bse3DI GCAATG 2 cut(s) 477, 533
Bse8I GATNNNNATC 1 cut(s) 1324
BseBI CCWGG 4 cut(s) 513, 659, 1149, 1166
BseDI CCNNGG 6 cut(s) 37, 198, 645, 657, 982, 1016
BseGI GGATG 1 cut(s) 1351
BseJI GATNNNNATC 1 cut(s) 1324
BseLI CCNNNNNNNGG 5 cut(s) 29, 122, 399, 743, 983
BseMI GCAATG 2 cut(s) 477, 533
BseMII CTCAG 3 cut(s) 605, 605, 1172
BseRI GAGGAG 4 cut(s) 45, 366, 850, 1130
BseXI GCAGC 5 cut(s) 479, 628, 1087, 1090, 1310
BsgI GTGCAG 1 cut(s) 1317
BshFI GGCC 3 cut(s) 36, 262, 547
BshNI GGYRCC 1 cut(s) 1400
BsiHKAI GWGCWC 4 cut(s) 279, 779, 876, 1159
BsiHKCI CYCGRG 1 cut(s) 1059
BsiSI CCGG 3 cut(s) 288, 368, 435
BslFI GGGAC 2 cut(s) 313, 470
BslI CCNNNNNNNGG 5 cut(s) 29, 122, 399, 743, 983
BsmAI GTCTC 2 cut(s) 894, 1140
BsmFI GGGAC 2 cut(s) 313, 470
BsnI GGCC 3 cut(s) 36, 262, 547
BsoBI CYCGRG 1 cut(s) 1059
Bsp1286I GDGCHC 4 cut(s) 279, 779, 876, 1159
Bsp1407I TGTACA 1 cut(s) 75
Bsp143I GATC 8 cut(s) 103, 207, 781, 803, 889, 997, 1051, 1076
BspACI CCGC 3 cut(s) 242, 574, 639
BspANI GGCC 3 cut(s) 36, 262, 547
BspCNI CTCAG 3 cut(s) 604, 606, 1171
BspHI TCATGA 1 cut(s) 142
BspLI GGNNCC 4 cut(s) 342, 975, 992, 1402
BspMAI CTGCAG 2 cut(s) 425, 469
BspPI GGATC 4 cut(s) 98, 798, 992, 1084
BspT107I GGYRCC 1 cut(s) 1400
BsrDI GCAATG 2 cut(s) 477, 533
BsrGI TGTACA 1 cut(s) 75
BssECI CCNNGG 6 cut(s) 37, 198, 645, 657, 982, 1016
BssMI GATC 8 cut(s) 103, 207, 781, 803, 889, 997, 1051, 1076
BssNI GRCGYC 1 cut(s) 533
BssT1I CCWWGG 4 cut(s) 37, 645, 982, 1016
Bst2UI CCWGG 4 cut(s) 513, 659, 1149, 1166
Bst4CI ACNGT 3 cut(s) 308, 555, 1049
Bst6I CTCTTC 1 cut(s) 678
BstACI GRCGYC 1 cut(s) 533
BstAUI TGTACA 1 cut(s) 75
BstDEI CTNAG 3 cut(s) 591, 614, 1158
BstENI CCTNNNNNAGG 1 cut(s) 120
BstF5I GGATG 1 cut(s) 1351
BstHHI GCGC 1 cut(s) 256
BstKTI GATC 8 cut(s) 106, 210, 784, 806, 892, 1000, 1054, 1079
BstMAI GTCTC 2 cut(s) 894, 1140
BstMBI GATC 8 cut(s) 103, 207, 781, 803, 889, 997, 1051, 1076
BstMWI GCNNNNNNNGC 2 cut(s) 13, 380
BstNI CCWGG 4 cut(s) 513, 659, 1149, 1166
BstPAI GACNNNNGTC 1 cut(s) 1280
BstSCI CCNGG 6 cut(s) 286, 366, 511, 657, 1147, 1164
BstSFI CTRYAG 2 cut(s) 421, 465
BstV1I GCAGC 5 cut(s) 479, 628, 1087, 1090, 1310
BstX2I RGATCY 2 cut(s) 103, 1076
BstYI RGATCY 2 cut(s) 103, 1076
BsuRI GGCC 3 cut(s) 36, 262, 547
BtsCI GGATG 1 cut(s) 1351
BtsI GCAGTG 1 cut(s) 723
BtsIMutI CAGTG 3 cut(s) 723, 819, 1137
CaiI CAGNNNCTG 1 cut(s) 1165
CciI TCATGA 1 cut(s) 142
CfoI GCGC 1 cut(s) 256
Cfr13I GGNCC 1 cut(s) 974
CsiI ACCWGGT 2 cut(s) 511, 1164
Csp6I GTAC 5 cut(s) 76, 390, 1185, 1386, 1471
CspCI CAANNNNNGTGG 4 cut(s) 252, 287, 1302, 1337
CviAII CATG 9 cut(s) 59, 143, 246, 395, 622, 995, 1363, 1383, 1427
CviQI GTAC 5 cut(s) 76, 390, 1185, 1386, 1471
DdeI CTNAG 3 cut(s) 591, 614, 1158
DpnI GATC 8 cut(s) 105, 209, 783, 805, 891, 999, 1053, 1078
DpnII GATC 8 cut(s) 103, 207, 781, 803, 889, 997, 1051, 1076
DraIII CACNNNGTG 1 cut(s) 453
DriI GACNNNNNGTC 1 cut(s) 67
EaeI YGGCCR 1 cut(s) 260
Eam1104I CTCTTC 1 cut(s) 678
Eam1105I GACNNNNNGTC 1 cut(s) 67
EarI CTCTTC 1 cut(s) 678
Ecl136II GAGCTC 2 cut(s) 777, 874
Eco130I CCWWGG 4 cut(s) 37, 645, 982, 1016
Eco24I GRGCYC 2 cut(s) 779, 876
Eco47I GGWCC 1 cut(s) 974
Eco53kI GAGCTC 2 cut(s) 777, 874
Eco57I CTGAAG 2 cut(s) 568, 1113
Eco88I CYCGRG 1 cut(s) 1059
EcoICRI GAGCTC 2 cut(s) 777, 874
EcoNI CCTNNNNNAGG 1 cut(s) 120
EcoRII CCWGG 4 cut(s) 511, 657, 1147, 1164
EcoT14I CCWWGG 4 cut(s) 37, 645, 982, 1016
EcoT38I GRGCYC 2 cut(s) 779, 876
ErhI CCWWGG 4 cut(s) 37, 645, 982, 1016
FaeI CATG 9 cut(s) 62, 146, 249, 398, 625, 998, 1366, 1386, 1430
FalI AAGNNNNNCTT 2 cut(s) 654, 686
FaqI GGGAC 2 cut(s) 313, 470
FatI CATG 9 cut(s) 58, 142, 245, 394, 621, 994, 1362, 1382, 1426
FbaI TGATCA 3 cut(s) 781, 889, 1051
Fnu4HI GCNGC 7 cut(s) 8, 242, 468, 642, 1101, 1104, 1299
FokI GGATG 1 cut(s) 1338
FriOI GRGCYC 2 cut(s) 779, 876
Fsp4HI GCNGC 7 cut(s) 8, 242, 468, 642, 1101, 1104, 1299
FspBI CTAG 2 cut(s) 81, 1317
GlaI GCGC 1 cut(s) 255
GluI GCNGC 7 cut(s) 8, 242, 468, 642, 1101, 1104, 1299
HaeIII GGCC 3 cut(s) 36, 262, 547
HapII CCGG 3 cut(s) 288, 368, 435
HhaI GCGC 1 cut(s) 256
Hin1I GRCGYC 1 cut(s) 533
Hin1II CATG 9 cut(s) 62, 146, 249, 398, 625, 998, 1366, 1386, 1430
Hin6I GCGC 1 cut(s) 254
HinP1I GCGC 1 cut(s) 254
HindIII AAGCTT 1 cut(s) 1031
HinfI GANTC 3 cut(s) 461, 855, 1172
HpaII CCGG 3 cut(s) 288, 368, 435
HphI GGTGA 1 cut(s) 207
Hpy166II GTNNAC 2 cut(s) 78, 711
Hpy188I TCNGA 9 cut(s) 541, 696, 781, 786, 1161, 1177, 1202, 1286, 1330
Hpy188III TCNNGA 5 cut(s) 134, 143, 1059, 1273, 1372
Hpy8I GTNNAC 2 cut(s) 78, 711
Hpy99I CGWCG 1 cut(s) 538
HpyAV CCTTC 5 cut(s) 126, 469, 484, 825, 1436
HpyCH4III ACNGT 3 cut(s) 308, 555, 1049
HpyCH4IV ACGT 2 cut(s) 360, 533
HpyCH4V TGCA 8 cut(s) 423, 467, 654, 1088, 1106, 1261, 1298, 1334
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 380
HpyF3I CTNAG 3 cut(s) 591, 614, 1158
HpySE526I ACGT 2 cut(s) 360, 533
Hsp92I GRCGYC 1 cut(s) 533
Hsp92II CATG 9 cut(s) 62, 146, 249, 398, 625, 998, 1366, 1386, 1430
HspAI GCGC 1 cut(s) 254
Ksp22I TGATCA 3 cut(s) 781, 889, 1051
Kzo9I GATC 8 cut(s) 103, 207, 781, 803, 889, 997, 1051, 1076
LmnI GCTCC 5 cut(s) 4, 274, 379, 1087, 1364
Lsp1109I GCAGC 5 cut(s) 479, 628, 1087, 1090, 1310
LweI GCATC 4 cut(s) 917, 1002, 1321, 1384
MabI ACCWGGT 2 cut(s) 511, 1164
MaeI CTAG 2 cut(s) 81, 1317
MaeII ACGT 2 cut(s) 360, 533
MaeIII GTNAC 2 cut(s) 958, 1043
MalI GATC 8 cut(s) 105, 209, 783, 805, 891, 999, 1053, 1078
MboI GATC 8 cut(s) 103, 207, 781, 803, 889, 997, 1051, 1076
MfeI CAATTG 1 cut(s) 1437
MflI RGATCY 2 cut(s) 103, 1076
MhlI GDGCHC 4 cut(s) 279, 779, 876, 1159
MluCI AATT 5 cut(s) 749, 1007, 1109, 1437, 1452
MmeI TCCRAC 1 cut(s) 968
MroXI GAANNNNTTC 1 cut(s) 936
MseI TTAA 5 cut(s) 330, 518, 759, 771, 1455
MslI CAYNNNNRTG 2 cut(s) 90, 626
MspA1I CMGCKG 1 cut(s) 641
MspI CCGG 3 cut(s) 288, 368, 435
MspR9I CCNGG 6 cut(s) 288, 368, 513, 659, 1149, 1166
MunI CAATTG 1 cut(s) 1437
MvaI CCWGG 4 cut(s) 513, 659, 1149, 1166
MwoI GCNNNNNNNGC 2 cut(s) 13, 380
NciI CCSGG 2 cut(s) 288, 368
NdeII GATC 8 cut(s) 103, 207, 781, 803, 889, 997, 1051, 1076
NlaIII CATG 9 cut(s) 62, 146, 249, 398, 625, 998, 1366, 1386, 1430
NlaIV GGNNCC 4 cut(s) 342, 975, 992, 1402
PaeR7I CTCGAG 1 cut(s) 1059
PagI TCATGA 1 cut(s) 142
PcsI WCGNNNNNNNCGW 1 cut(s) 1271
PdmI GAANNNNTTC 1 cut(s) 936
PfeI GAWTC 3 cut(s) 461, 855, 1172
PflFI GACNNNGTC 1 cut(s) 535
PfoI TCCNGGA 1 cut(s) 1147
PkrI GCNGC 7 cut(s) 9, 243, 469, 643, 1102, 1105, 1300
PshAI GACNNNNGTC 1 cut(s) 1280
Psp124BI GAGCTC 2 cut(s) 779, 876
Psp6I CCWGG 4 cut(s) 511, 657, 1147, 1164
PspGI CCWGG 4 cut(s) 511, 657, 1147, 1164
PspN4I GGNNCC 4 cut(s) 342, 975, 992, 1402
PspPI GGNCC 1 cut(s) 974
PstI CTGCAG 2 cut(s) 425, 469
PstNI CAGNNNCTG 1 cut(s) 1165
PsuI RGATCY 2 cut(s) 103, 1076
PsyI GACNNNGTC 1 cut(s) 535
RsaI GTAC 5 cut(s) 77, 391, 1186, 1387, 1472
RsaNI GTAC 5 cut(s) 76, 390, 1185, 1386, 1471
RseI CAYNNNNRTG 2 cut(s) 90, 626
SacI GAGCTC 2 cut(s) 779, 876
SaqAI TTAA 5 cut(s) 330, 518, 759, 771, 1455
SatI GCNGC 7 cut(s) 8, 242, 468, 642, 1101, 1104, 1299
Sau3AI GATC 8 cut(s) 103, 207, 781, 803, 889, 997, 1051, 1076
Sau96I GGNCC 1 cut(s) 974
ScaI AGTACT 1 cut(s) 1186
ScrFI CCNGG 6 cut(s) 288, 368, 513, 659, 1149, 1166
SduI GDGCHC 4 cut(s) 279, 779, 876, 1159
SexAI ACCWGGT 2 cut(s) 511, 1164
SfaNI GCATC 4 cut(s) 917, 1002, 1321, 1384
SfcI CTRYAG 2 cut(s) 421, 465
Sfr274I CTCGAG 1 cut(s) 1059
SinI GGWCC 1 cut(s) 974
SlaI CTCGAG 1 cut(s) 1059
SmiMI CAYNNNNRTG 2 cut(s) 90, 626
SmlI CTYRAG 5 cut(s) 120, 378, 1059, 1462, 1476
SmoI CTYRAG 5 cut(s) 120, 378, 1059, 1462, 1476
SpeI ACTAGT 1 cut(s) 80
Sse9I AATT 5 cut(s) 749, 1007, 1109, 1437, 1452
SsiI CCGC 3 cut(s) 242, 574, 639
SspMI CTAG 2 cut(s) 81, 1317
SstI GAGCTC 2 cut(s) 779, 876
StyD4I CCNGG 6 cut(s) 286, 366, 511, 657, 1147, 1164
StyI CCWWGG 4 cut(s) 37, 645, 982, 1016
TaaI ACNGT 3 cut(s) 308, 555, 1049
TaiI ACGT 2 cut(s) 363, 536
TaqI TCGA 4 cut(s) 930, 1060, 1265, 1274
TasI AATT 5 cut(s) 749, 1007, 1109, 1437, 1452
TatI WGTACW 3 cut(s) 75, 1184, 1385
TauI GCSGC 1 cut(s) 244
TfiI GAWTC 3 cut(s) 461, 855, 1172
Tru1I TTAA 5 cut(s) 330, 518, 759, 771, 1455
Tru9I TTAA 5 cut(s) 330, 518, 759, 771, 1455
TscAI CASTG 3 cut(s) 730, 826, 1137
TseI GCWGC 6 cut(s) 7, 467, 641, 1100, 1103, 1298
TspDTI ATGAA 7 cut(s) 411, 423, 488, 610, 647, 1082, 1443
TspGWI ACGGA 2 cut(s) 12, 759
TspRI CASTG 3 cut(s) 730, 826, 1137
Tth111I GACNNNGTC 1 cut(s) 535
VpaK11BI GGWCC 1 cut(s) 974
XagI CCTNNNNNAGG 1 cut(s) 120
XapI RAATTY 1 cut(s) 1109
XcmI CCANNNNNNNNNTGG 1 cut(s) 984
XhoI CTCGAG 1 cut(s) 1059
XmnI GAANNNNTTC 1 cut(s) 936
XspI CTAG 2 cut(s) 81, 1317
ZraI GACGTC 1 cut(s) 534
ZrmI AGTACT 1 cut(s) 1186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.