Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011340

Physical Location & Seq

Genomic Coordinates Reverse (-)

2710781 .. 2713255

Gene Structure 2475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G08415.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGATGCATCATTGCTCAATTACGAAACCCACTTTCTCAATTTCGATCTCGACCCAGAAGCTTCATCATCATTCCAGTAAATTCTTGAATTTGGGTTTCAGAATCCGATGCGAATCCGGGGATGTTTCGTCGCCATTGCGGACCAAGGCGGTGTCTTTGTCGTCGGAGATGGAGGATTCGTCGTCCTTGAAGAAGAGTTTGATGGAGTTAGAAGGGAAGAAGAGTGAGCCTTACCCAGGAGGAATGCCGAAGATGGGTCCATTCACAGGGAGAGATCCGAATGTGAAGAAACCTGCTTGGTTGAGACAGAAGGCACCACAAGGCGAAAGGTTTCAGGAGGTGAAAGAGTCCCTTTCTCGTCTCAATCTCAATACTGTTTGTGAAGAAGCTCAGTGTCCTAATATCGGCGAGTGTTGGAATGGAGGTGGTGATGGTGTAGCAACTGCAACCATCATGGTTCTTGGTGATACTTGTACTCGTGGCTGTAGATTCTGTGCTGTTAAAACAAGTAGAAATCCTCCTCCTCCTGACCCAATGGAACCAGAGAACACTGCCAAGGCCATAGCCAGTTGGGGTGTAGACTACATAGTTATTACCAGCGTAGACCGTGACGATATACCTGATGGTGGAAGTGGACATTTTGCGCAGACTGTCAAAGCTATGAAGAGACATAAGCCGGATATAATGATAGAATGCTTAACTTCTGATTTTCGTGGGGATTTGGAGGCTGTCGACACTCTTGTGCACTCGGGATTGGATGTTTTTGCTCACAATGTCGAGACTGTGAAAAGGCTCCAGCGACTTGTGAGGGATCCTAGGGCTGGATATGAGCAGAGCATGTCAGTTTTGAAACATGCAAAGATCAGCAAACCTGGAATGATCACAAAGACATCCATAATGCTTGGTCTTGGAGAAACAGACGAAGAGTTGAAGGAAGCAATGGCTGATCTAAGAGCTATAGATGTTGATATTCTAACACTTGGCCAGTATCTACAGCCAACTCCATTGCATCTGACTGTGAAAGAGTATGTCACACCTGAGAAGTTTGATTTCTGGAAAACATACGGAGAATCAATAGGATTTCGTTATGTTGCAAGTGGTCCACTGGTAAGATCTTCATATAGAGCAGGAGAGCTTTTTGTTAAGACAATGGTGAAAGAAAGCTACTCTAAATCCTTGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006464 GO:0006629 GO:0006631 GO:0006633 GO:0006732 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009106 GO:0009107 GO:0009108 GO:0009249 GO:0009987 GO:0010467 GO:0016053 GO:0016740 GO:0016782 GO:0016783 GO:0016992 GO:0018065 GO:0018130 GO:0018193 GO:0018205 GO:0019538 GO:0019752 GO:0032787 GO:0036211 GO:0043170 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044272 GO:0044281 GO:0044283 GO:0046394 GO:0046483 GO:0051186 GO:0051188 GO:0051604 GO:0070283 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00785 ko01100 map00785 map01100

Pfam Domains

Protein Families

FeThRed_A LIAS_N Radical_SAM

Protein Analysis

394

Amino Acids

43.62

Weight (kDa)

8.0

Isoelectric Point (pI)

39.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIAS_N	PF16881	95 - 132	3.8e-09	N-terminal domain of lipoyl synthase of Radical_SAM family
Radical_SAM	PF04055	153 - 316	9.4e-26	Radical SAM superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011340)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08415
fragaria_vesca	FvH4_4g37350
malus_domestica	MD12G1087800.v1.1 MD13G1000600.v1.1 MD16G1005000.v1.1
prunus_persica	Prupe.1G352000_v2.0.a1 Prupe.1G352000_v2.0.a1 Prupe.1G352000_v2.0.a1 Prupe.1G352000_v2.0.a1
pyrus_communis	pycom12g07510 pycom13g00060
rosa_chinensis	RchiOBHm_Chr4g0447211
rosa_laevigata	RLG00000005596
rosa_multiflora	Rmu_ssc0000396.1_g000001
rosa_rugosa	Rorug04G0379000
rosa_samantha	Rh4AG440300 Rh4BG449300 Rh4CG466300 Rh4DG447800
rosa_wichuraiana	Rw4G037670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	645
Acc36I	ACCTGC	1 cut(s)	301
AccB1I	GGYRCC	1 cut(s)	313
AccI	GTMKAC	3 cut(s)	579, 603, 732
AciI	CCGC	2 cut(s)	139, 149
AclWI	GGATC	3 cut(s)	269, 806, 819
AcoI	YGGCCR	1 cut(s)	982
AcsI	RAATTY	2 cut(s)	80, 88
AfaI	GTAC	1 cut(s)	475
AfiI	CCNNNNNNNGG	6 cut(s)	236, 254, 266, 404, 626, 821
AgsI	TTSAA	4 cut(s)	88, 190, 850, 931
AjnI	CCWGG	2 cut(s)	235, 871
AleI	CACNNNNGTG	1 cut(s)	740
AluBI	AGCT	6 cut(s)	61, 389, 659, 956, 1135, 1164
AluI	AGCT	6 cut(s)	61, 389, 659, 956, 1135, 1164
Alw21I	GWGCWC	1 cut(s)	747
Alw26I	GTCTC	4 cut(s)	298, 365, 661, 773
Alw44I	GTGCAC	1 cut(s)	743
AlwI	GGATC	3 cut(s)	269, 806, 819
Ama87I	CYCGRG	1 cut(s)	748
AoxI	GGCC	2 cut(s)	558, 982
ApaLI	GTGCAC	1 cut(s)	743
ApoI	RAATTY	2 cut(s)	80, 88
Asp700I	GAANNNNTTC	1 cut(s)	330
AspA2I	CCTAGG	1 cut(s)	815
AspLEI	GCGC	1 cut(s)	646
AspS9I	GGNCC	3 cut(s)	141, 257, 1100
AsuC2I	CCSGG	1 cut(s)	118
AsuHPI	GGTGA	4 cut(s)	352, 440, 476, 1165
AvaI	CYCGRG	1 cut(s)	748
AvaII	GGWCC	3 cut(s)	141, 257, 1100
AvrII	CCTAGG	1 cut(s)	815
BaeGI	GKGCMC	1 cut(s)	747
BalI	TGGCCA	1 cut(s)	984
BamHI	GGATCC	1 cut(s)	811
BanI	GGYRCC	1 cut(s)	313
BauI	CACGAG	1 cut(s)	477
Bbv12I	GWGCWC	1 cut(s)	747
BccI	CCATC	6 cut(s)	163, 196, 247, 425, 458, 617
BciT130I	CCWGG	2 cut(s)	237, 873
BclI	TGATCA	1 cut(s)	879
BcnI	CCSGG	1 cut(s)	118
BcoDI	GTCTC	4 cut(s)	298, 365, 661, 773
BfaI	CTAG	1 cut(s)	816
BfmI	CTRYAG	3 cut(s)	484, 957, 992
BfuAI	ACCTGC	1 cut(s)	301
BglII	AGATCT	1 cut(s)	1112
BlnI	CCTAGG	1 cut(s)	815
Bme1390I	CCNGG	3 cut(s)	118, 237, 873
Bme18I	GGWCC	3 cut(s)	141, 257, 1100
BmeT110I	CYCGRG	1 cut(s)	748
BmgT120I	GGNCC	3 cut(s)	141, 257, 1100
BmiI	GGNNCC	5 cut(s)	258, 315, 540, 794, 813
BmrFI	CCNGG	3 cut(s)	118, 237, 873
BmsI	GCATC	3 cut(s)	16, 98, 1018
BpmI	CTGGAG	1 cut(s)	779
BpuMI	CCSGG	1 cut(s)	118
BsaBI	GATNNNNATC	1 cut(s)	112
BsaJI	CCNNGG	5 cut(s)	117, 144, 235, 555, 815
BsaXI	ACNNNNNCTCC	2 cut(s)	164, 194
Bsc4I	CCNNNNNNNGG	6 cut(s)	236, 254, 266, 404, 626, 821
Bse1I	ACTGG	4 cut(s)	75, 567, 985, 1110
Bse3DI	GCAATG	4 cut(s)	10, 134, 945, 1004
Bse8I	GATNNNNATC	1 cut(s)	112
BseBI	CCWGG	2 cut(s)	237, 873
BseDI	CCNNGG	5 cut(s)	117, 144, 235, 555, 815
BseGI	GGATG	3 cut(s)	127, 763, 890
BseJI	GATNNNNATC	1 cut(s)	112
BseLI	CCNNNNNNNGG	6 cut(s)	236, 254, 266, 404, 626, 821
BseMI	GCAATG	4 cut(s)	10, 134, 945, 1004
BseMII	CTCAG	2 cut(s)	404, 1029
BseNI	ACTGG	4 cut(s)	75, 567, 985, 1110
BseRI	GAGGAG	2 cut(s)	510, 513
BseSI	GKGCMC	1 cut(s)	747
BshFI	GGCC	2 cut(s)	560, 984
BshNI	GGYRCC	1 cut(s)	313
BsiHKAI	GWGCWC	1 cut(s)	747
BsiHKCI	CYCGRG	1 cut(s)	748
BsiSI	CCGG	2 cut(s)	117, 677
BslFI	GGGAC	1 cut(s)	334
BslI	CCNNNNNNNGG	6 cut(s)	236, 254, 266, 404, 626, 821
BsmAI	GTCTC	4 cut(s)	298, 365, 661, 773
BsmBI	CGTCTC	1 cut(s)	365
BsmFI	GGGAC	1 cut(s)	334
BsmI	GAATGC	2 cut(s)	249, 698
BsnI	GGCC	2 cut(s)	560, 984
BsoBI	CYCGRG	1 cut(s)	748
Bsp1286I	GDGCHC	1 cut(s)	747
Bsp143I	GATC	7 cut(s)	45, 274, 811, 861, 879, 946, 1112
BspACI	CCGC	2 cut(s)	139, 149
BspANI	GGCC	2 cut(s)	560, 984
BspCNI	CTCAG	2 cut(s)	403, 1030
BspLI	GGNNCC	5 cut(s)	258, 315, 540, 794, 813
BspMI	ACCTGC	1 cut(s)	301
BspPI	GGATC	3 cut(s)	269, 806, 819
BspT107I	GGYRCC	1 cut(s)	313
BsrDI	GCAATG	4 cut(s)	10, 134, 945, 1004
BsrI	ACTGG	4 cut(s)	75, 567, 985, 1110
BssECI	CCNNGG	5 cut(s)	117, 144, 235, 555, 815
BssMI	GATC	7 cut(s)	45, 274, 811, 861, 879, 946, 1112
BssSI	CACGAG	1 cut(s)	477
BssT1I	CCWWGG	3 cut(s)	144, 555, 815
Bst2BI	CACGAG	1 cut(s)	477
Bst2UI	CCWGG	2 cut(s)	237, 873
Bst4CI	ACNGT	5 cut(s)	376, 608, 652, 784, 1018
Bst6I	CTCTTC	4 cut(s)	188, 215, 659, 918
BstDEI	CTNAG	3 cut(s)	390, 950, 1038
BstENI	CCTNNNNNAGG	1 cut(s)	234
BstF5I	GGATG	3 cut(s)	127, 763, 890
BstHHI	GCGC	1 cut(s)	646
BstKTI	GATC	7 cut(s)	48, 277, 814, 864, 882, 949, 1115
BstMAI	GTCTC	4 cut(s)	298, 365, 661, 773
BstMBI	GATC	7 cut(s)	45, 274, 811, 861, 879, 946, 1112
BstNI	CCWGG	2 cut(s)	237, 873
BstNSI	RCATGY	2 cut(s)	841, 857
BstSCI	CCNGG	3 cut(s)	116, 235, 871
BstSFI	CTRYAG	3 cut(s)	484, 957, 992
BstSLI	GKGCMC	1 cut(s)	747
BstX2I	RGATCY	3 cut(s)	274, 811, 1112
BstYI	RGATCY	3 cut(s)	274, 811, 1112
BsuRI	GGCC	2 cut(s)	560, 984
BtsCI	GGATG	3 cut(s)	127, 763, 890
BtsI	GCAGTG	1 cut(s)	549
BtsIMutI	CAGTG	3 cut(s)	398, 549, 1103
BveI	ACCTGC	1 cut(s)	301
CfoI	GCGC	1 cut(s)	646
Cfr13I	GGNCC	3 cut(s)	141, 257, 1100
Csp6I	GTAC	1 cut(s)	474
CviAII	CATG	3 cut(s)	454, 838, 854
CviQI	GTAC	1 cut(s)	474
DdeI	CTNAG	3 cut(s)	390, 950, 1038
DpnI	GATC	7 cut(s)	47, 276, 813, 863, 881, 948, 1114
DpnII	GATC	7 cut(s)	45, 274, 811, 861, 879, 946, 1112
EaeI	YGGCCR	1 cut(s)	982
Eam1104I	CTCTTC	4 cut(s)	188, 215, 659, 918
EarI	CTCTTC	4 cut(s)	188, 215, 659, 918
Eco130I	CCWWGG	3 cut(s)	144, 555, 815
Eco47I	GGWCC	3 cut(s)	141, 257, 1100
Eco88I	CYCGRG	1 cut(s)	748
EcoNI	CCTNNNNNAGG	1 cut(s)	234
EcoRII	CCWGG	2 cut(s)	235, 871
EcoT14I	CCWWGG	3 cut(s)	144, 555, 815
EcoT22I	ATGCAT	1 cut(s)	9
ErhI	CCWWGG	3 cut(s)	144, 555, 815
Esp3I	CGTCTC	1 cut(s)	365
FaeI	CATG	3 cut(s)	457, 841, 857
FalI	AAGNNNNNCTT	2 cut(s)	336, 368
FaqI	GGGAC	1 cut(s)	334
FatI	CATG	3 cut(s)	453, 837, 853
FbaI	TGATCA	1 cut(s)	879
FblI	GTMKAC	3 cut(s)	579, 603, 732
FokI	GGATG	3 cut(s)	134, 770, 877
FspBI	CTAG	1 cut(s)	816
FspI	TGCGCA	1 cut(s)	645
GlaI	GCGC	1 cut(s)	645
GsuI	CTGGAG	1 cut(s)	779
HaeIII	GGCC	2 cut(s)	560, 984
HapII	CCGG	2 cut(s)	117, 677
HhaI	GCGC	1 cut(s)	646
Hin1II	CATG	3 cut(s)	457, 841, 857
Hin6I	GCGC	1 cut(s)	644
HinP1I	GCGC	1 cut(s)	644
HincII	GTYRAC	1 cut(s)	733
HindII	GTYRAC	1 cut(s)	733
HindIII	AAGCTT	1 cut(s)	59
HinfI	GANTC	6 cut(s)	102, 113, 176, 347, 489, 1070
HpaII	CCGG	2 cut(s)	117, 677
HphI	GGTGA	4 cut(s)	352, 440, 476, 1165
Hpy166II	GTNNAC	6 cut(s)	580, 604, 635, 733, 745, 1103
Hpy188I	TCNGA	6 cut(s)	101, 107, 166, 279, 706, 1014
Hpy188III	TCNNGA	7 cut(s)	49, 85, 335, 527, 750, 778, 1054
Hpy8I	GTNNAC	6 cut(s)	580, 604, 635, 733, 745, 1103
Hpy99I	CGWCG	3 cut(s)	133, 166, 184
HpyAV	CCTTC	3 cut(s)	206, 304, 925
HpyCH4III	ACNGT	5 cut(s)	376, 608, 652, 784, 1018
HpyCH4V	TGCA	6 cut(s)	7, 446, 745, 857, 1009, 1094
HpyF3I	CTNAG	3 cut(s)	390, 950, 1038
Hsp92II	CATG	3 cut(s)	457, 841, 857
HspAI	GCGC	1 cut(s)	644
Ksp22I	TGATCA	1 cut(s)	879
Kzo9I	GATC	7 cut(s)	45, 274, 811, 861, 879, 946, 1112
LmnI	GCTCC	1 cut(s)	798
LweI	GCATC	3 cut(s)	16, 98, 1018
MaeI	CTAG	1 cut(s)	816
MaeIII	GTNAC	2 cut(s)	608, 1030
MalI	GATC	7 cut(s)	47, 276, 813, 863, 881, 948, 1114
MboI	GATC	7 cut(s)	45, 274, 811, 861, 879, 946, 1112
MflI	RGATCY	3 cut(s)	274, 811, 1112
MhlI	GDGCHC	1 cut(s)	747
MlsI	TGGCCA	1 cut(s)	984
MluCI	AATT	4 cut(s)	18, 39, 80, 88
MluNI	TGGCCA	1 cut(s)	984
MlyI	GAGTC	1 cut(s)	356
MmeI	TCCRAC	2 cut(s)	144, 395
MnlI	CCTC	9 cut(s)	166, 233, 331, 416, 528, 531, 534, 718, 801
Mox20I	TGGCCA	1 cut(s)	984
Mph1103I	ATGCAT	1 cut(s)	9
MroXI	GAANNNNTTC	1 cut(s)	330
MscI	TGGCCA	1 cut(s)	984
MseI	TTAA	4 cut(s)	501, 698, 1143, 1183
MslI	CAYNNNNRTG	1 cut(s)	740
Msp20I	TGGCCA	1 cut(s)	984
MspI	CCGG	2 cut(s)	117, 677
MspR9I	CCNGG	3 cut(s)	118, 237, 873
Mva1269I	GAATGC	2 cut(s)	249, 698
MvaI	CCWGG	2 cut(s)	237, 873
NciI	CCSGG	1 cut(s)	118
NdeII	GATC	7 cut(s)	45, 274, 811, 861, 879, 946, 1112
NlaIII	CATG	3 cut(s)	457, 841, 857
NlaIV	GGNNCC	5 cut(s)	258, 315, 540, 794, 813
NmuCI	GTSAC	2 cut(s)	608, 1030
NsbI	TGCGCA	1 cut(s)	645
NsiI	ATGCAT	1 cut(s)	9
NspI	RCATGY	2 cut(s)	841, 857
OliI	CACNNNNGTG	1 cut(s)	740
PctI	GAATGC	2 cut(s)	249, 698
PdmI	GAANNNNTTC	1 cut(s)	330
PfeI	GAWTC	5 cut(s)	102, 113, 176, 489, 1070
PleI	GAGTC	1 cut(s)	355
PpsI	GAGTC	1 cut(s)	355
Psp6I	CCWGG	2 cut(s)	235, 871
PspGI	CCWGG	2 cut(s)	235, 871
PspN4I	GGNNCC	5 cut(s)	258, 315, 540, 794, 813
PspPI	GGNCC	3 cut(s)	141, 257, 1100
PsuI	RGATCY	3 cut(s)	274, 811, 1112
RsaI	GTAC	1 cut(s)	475
RsaNI	GTAC	1 cut(s)	474
RseI	CAYNNNNRTG	1 cut(s)	740
SalI	GTCGAC	1 cut(s)	731
SaqAI	TTAA	4 cut(s)	501, 698, 1143, 1183
Sau3AI	GATC	7 cut(s)	45, 274, 811, 861, 879, 946, 1112
Sau96I	GGNCC	3 cut(s)	141, 257, 1100
SchI	GAGTC	1 cut(s)	356
ScrFI	CCNGG	3 cut(s)	118, 237, 873
SduI	GDGCHC	1 cut(s)	747
SfaNI	GCATC	3 cut(s)	16, 98, 1018
SfcI	CTRYAG	3 cut(s)	484, 957, 992
SinI	GGWCC	3 cut(s)	141, 257, 1100
SmiMI	CAYNNNNRTG	1 cut(s)	740
Sse9I	AATT	4 cut(s)	18, 39, 80, 88
SsiI	CCGC	2 cut(s)	139, 149
SspMI	CTAG	1 cut(s)	816
StyD4I	CCNGG	3 cut(s)	116, 235, 871
StyI	CCWWGG	3 cut(s)	144, 555, 815
TaaI	ACNGT	5 cut(s)	376, 608, 652, 784, 1018
TaqI	TCGA	4 cut(s)	44, 50, 732, 777
TasI	AATT	4 cut(s)	18, 39, 80, 88
TatI	WGTACW	1 cut(s)	473
TfiI	GAWTC	5 cut(s)	102, 113, 176, 489, 1070
Tru1I	TTAA	4 cut(s)	501, 698, 1143, 1183
Tru9I	TTAA	4 cut(s)	501, 698, 1143, 1183
TscAI	CASTG	3 cut(s)	398, 556, 1110
TseFI	GTSAC	2 cut(s)	608, 1030
Tsp45I	GTSAC	2 cut(s)	608, 1030
TspDTI	ATGAA	3 cut(s)	53, 677, 1107
TspGWI	ACGGA	1 cut(s)	1080
TspRI	CASTG	3 cut(s)	398, 556, 1110
VneI	GTGCAC	1 cut(s)	743
VpaK11BI	GGWCC	3 cut(s)	141, 257, 1100
XagI	CCTNNNNNAGG	1 cut(s)	234
XapI	RAATTY	2 cut(s)	80, 88
XceI	RCATGY	2 cut(s)	841, 857
XmaJI	CCTAGG	1 cut(s)	815
XmiI	GTMKAC	3 cut(s)	579, 603, 732
XmnI	GAANNNNTTC	1 cut(s)	330
XspI	CTAG	1 cut(s)	816
Zsp2I	ATGCAT	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.