Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011340

Physical Location & Seq

Genomic Coordinates Forward (+)

32722824 .. 32727831

Gene Structure 5008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G352000.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGATGATTCAACAGGTGCAATGTTCATCATGTTGGTCAACTATCCCAATTGATATTCCAAAAGGCCAGATTATGTCTGCAGCAGCAGGAGGAGCATCATCATCAAAACCCTTGAATGTGCAATCGAGGTCGAGGAGATTACGATGTGAGGCGGTGGTGGGGCGGCCGCACACAGGGAGAGACCCAAATGTGAAGAAGGCTGACTGGTTAAGGCAGAAAGCCCCACAAGGAGACAAGTATGAGGAGGTCAAGGAGTCATTGTCCCGTTTGAATCTGAAGACGGTGTGCGAGGAGGCCCAATGCCCAAACATCGGGGAGTGTTGGAATGGAGGTGGGGATGGCATTTCCACCGCCACTATCATGCTTCTTGGGGACACCTGCACCCGTGGCTGTCGTTTCTGTGCTGTCAAGACCAGCCGAACCCCTCCACCTCCCGATCCCATGGAACCTCTCAACACTGCTAACGCCATTGTCAGCTGGGGTGTCGATTATATTGTTTTAACCAGTGTCGATCGTGATGACCTGCCCGATGGTGGAAGTCGACATTTTGCTCTAACCGTCCAAGCCCTCAAGACTCTCAAACCTGACATCATGGTTGAATGTTTAACTTCTGACTTTCGTGGTGACTTGACGGCTGTAGACACTCTGGTCTACTCTGGGCTTGATGTCTTTGCTCACAACATTGAGACTGTCAAACGCCTCCAGCGAATTGTCAGAGACCCTCGGGCTGGGTATGAGCAGAGCTTATCTGTTCTAAAGCATGCAAAAGAAAGCAAGAAGGGGATGATAACAAAAACTTCTATAATGTTGGGCCTGGGAGAATCAGACGACGAGTTGAAGCAAGCTATGGCTGATTTAAGGGCTATAGATGTTGATATATTGACACTTGGACAATATTTACAGCCAACTCCATTGCATTTGACGGTCAAAGAATATGTTGTCCCTGAGAAATTTGTTTTCTGGAAGGAATATGGGGAGTCTATTGGATTTCGTTATGTAGCCAGTGGCCCCTTGGTCCGGTCCTCATATAGGGCGGGGGAGCTGTTTGTTAAGACGATGGTCAGGGAAAGGGTTAAGGGCTCTACTGGCATATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006464 GO:0006629 GO:0006631 GO:0006633 GO:0006732 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009106 GO:0009107 GO:0009108 GO:0009249 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016053 GO:0016740 GO:0016782 GO:0016783 GO:0016992 GO:0018065 GO:0018130 GO:0018193 GO:0018205 GO:0019538 GO:0019752 GO:0032787 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0051186 GO:0051188 GO:0051604 GO:0070283 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00785 ko01100 map00785 map01100

Pfam Domains

Protein Families

LIAS_N Radical_SAM

Protein Analysis

366

Amino Acids

40.24

Weight (kDa)

8.45

Isoelectric Point (pI)

37.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011340)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08415
fragaria_vesca	FvH4_4g37350
malus_domestica	MD12G1087800.v1.1 MD13G1000600.v1.1 MD16G1005000.v1.1
prunus_persica	Prupe.1G352000_v2.0.a1 Prupe.1G352000_v2.0.a1 Prupe.1G352000_v2.0.a1 Prupe.1G352000_v2.0.a1
pyrus_communis	pycom12g07510 pycom13g00060
rosa_chinensis	RchiOBHm_Chr4g0447211
rosa_laevigata	RLG00000005596
rosa_multiflora	Rmu_ssc0000396.1_g000001
rosa_rugosa	Rorug04G0379000
rosa_samantha	Rh4AG440300 Rh4BG449300 Rh4CG466300 Rh4DG447800
rosa_wichuraiana	Rw4G037670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	386
AasI	GACNNNNNNGTC	1 cut(s)	647
Acc36I	ACCTGC	2 cut(s)	386, 531
AccI	GTMKAC	3 cut(s)	541, 639, 651
AciI	CCGC	5 cut(s)	152, 163, 167, 351, 1034
AclWI	GGATC	1 cut(s)	431
AcoI	YGGCCR	1 cut(s)	164
AcsI	RAATTY	1 cut(s)	950
AcuI	CTGAAG	1 cut(s)	296
AfiI	CCNNNNNNNGG	6 cut(s)	173, 311, 533, 728, 1017, 1029
AgsI	TTSAA	5 cut(s)	11, 115, 271, 599, 838
AjnI	CCWGG	1 cut(s)	813
AluBI	AGCT	4 cut(s)	477, 744, 845, 1042
AluI	AGCT	4 cut(s)	477, 744, 845, 1042
Alw26I	GTCTC	4 cut(s)	174, 225, 680, 711
AlwI	GGATC	1 cut(s)	431
Ama87I	CYCGRG	1 cut(s)	723
AoxI	GGCC	5 cut(s)	64, 164, 294, 811, 1006
ApeKI	GCWGC	2 cut(s)	80, 83
ApoI	RAATTY	1 cut(s)	950
AspS9I	GGNCC	5 cut(s)	295, 811, 1007, 1015, 1020
AsuHPI	GGTGA	1 cut(s)	635
AvaI	CYCGRG	1 cut(s)	723
AvaII	GGWCC	2 cut(s)	1015, 1020
BanII	GRGCYC	1 cut(s)	1082
BbsI	GAAGAC	1 cut(s)	284
BbvI	GCAGC	2 cut(s)	92, 95
BccI	CCATC	3 cut(s)	332, 524, 1051
BceAI	ACGGC	1 cut(s)	648
BciT130I	CCWGG	1 cut(s)	815
BcoDI	GTCTC	4 cut(s)	174, 225, 680, 711
BfmI	CTRYAG	3 cut(s)	78, 636, 864
BfuAI	ACCTGC	2 cut(s)	386, 531
BisI	GCNGC	4 cut(s)	81, 84, 164, 167
BlsI	GCNGC	4 cut(s)	82, 85, 165, 168
Bme1390I	CCNGG	1 cut(s)	815
Bme18I	GGWCC	2 cut(s)	1015, 1020
BmeT110I	CYCGRG	1 cut(s)	723
BmgT120I	GGNCC	5 cut(s)	295, 811, 1007, 1015, 1020
BmiI	GGNNCC	2 cut(s)	447, 1009
BmrFI	CCNGG	1 cut(s)	815
BmsI	GCATC	1 cut(s)	104
BoxI	GACNNNNGTC	1 cut(s)	1058
BpiI	GAAGAC	1 cut(s)	284
BpmI	CTGGAG	1 cut(s)	686
BpuEI	CTTGAG	1 cut(s)	554
BsaI	GGTCTC	2 cut(s)	174, 711
BsaJI	CCNNGG	5 cut(s)	385, 441, 722, 814, 1011
BsaWI	WCCGGW	1 cut(s)	1017
BsaXI	ACNNNNNCTCC	2 cut(s)	245, 275
Bsc4I	CCNNNNNNNGG	6 cut(s)	173, 311, 533, 728, 1017, 1029
Bse1I	ACTGG	4 cut(s)	209, 504, 1002, 1090
Bse3DI	GCAATG	2 cut(s)	26, 911
BseBI	CCWGG	1 cut(s)	815
BseDI	CCNNGG	5 cut(s)	385, 441, 722, 814, 1011
BseGI	GGATG	2 cut(s)	343, 789
BseLI	CCNNNNNNNGG	6 cut(s)	173, 311, 533, 728, 1017, 1029
BseMI	GCAATG	2 cut(s)	26, 911
BseMII	CTCAG	1 cut(s)	936
BseNI	ACTGG	4 cut(s)	209, 504, 1002, 1090
BseRI	GAGGAG	4 cut(s)	105, 148, 257, 305
BseX3I	CGGCCG	1 cut(s)	164
BseXI	GCAGC	2 cut(s)	92, 95
BseYI	CCCAGC	2 cut(s)	477, 728
BsgI	GTGCAG	1 cut(s)	364
Bsh1285I	CGRYCG	2 cut(s)	167, 514
BshFI	GGCC	5 cut(s)	66, 166, 296, 813, 1008
BsiEI	CGRYCG	2 cut(s)	167, 514
BsiHKCI	CYCGRG	1 cut(s)	723
BsiSI	CCGG	1 cut(s)	1018
BslFI	GGGAC	3 cut(s)	247, 386, 926
BslI	CCNNNNNNNGG	6 cut(s)	173, 311, 533, 728, 1017, 1029
BsmAI	GTCTC	4 cut(s)	174, 225, 680, 711
BsmFI	GGGAC	3 cut(s)	247, 386, 926
BsnI	GGCC	5 cut(s)	66, 166, 296, 813, 1008
Bso31I	GGTCTC	2 cut(s)	174, 711
BsoBI	CYCGRG	1 cut(s)	723
Bsp1286I	GDGCHC	1 cut(s)	1082
Bsp143I	GATC	2 cut(s)	436, 511
Bsp19I	CCATGG	1 cut(s)	441
BspACI	CCGC	5 cut(s)	152, 163, 167, 351, 1034
BspANI	GGCC	5 cut(s)	66, 166, 296, 813, 1008
BspCNI	CTCAG	1 cut(s)	937
BspLI	GGNNCC	2 cut(s)	447, 1009
BspMAI	CTGCAG	1 cut(s)	82
BspMI	ACCTGC	2 cut(s)	386, 531
BspPI	GGATC	1 cut(s)	431
BspTNI	GGTCTC	2 cut(s)	174, 711
BsrDI	GCAATG	2 cut(s)	26, 911
BsrI	ACTGG	4 cut(s)	209, 504, 1002, 1090
BssECI	CCNNGG	5 cut(s)	385, 441, 722, 814, 1011
BssMI	GATC	2 cut(s)	436, 511
BssT1I	CCWWGG	2 cut(s)	441, 1011
Bst2UI	CCWGG	1 cut(s)	815
Bst4CI	ACNGT	4 cut(s)	283, 559, 691, 925
BstC8I	GCNNGC	2 cut(s)	762, 843
BstDEI	CTNAG	1 cut(s)	945
BstDSI	CCRYGG	2 cut(s)	385, 441
BstENI	CCTNNNNNAGG	1 cut(s)	1027
BstF5I	GGATG	2 cut(s)	343, 789
BstKTI	GATC	2 cut(s)	439, 514
BstMAI	GTCTC	4 cut(s)	174, 225, 680, 711
BstMBI	GATC	2 cut(s)	436, 511
BstMCI	CGRYCG	2 cut(s)	167, 514
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 387, 1086
BstNI	CCWGG	1 cut(s)	815
BstNSI	RCATGY	1 cut(s)	764
BstPAI	GACNNNNGTC	1 cut(s)	1058
BstSCI	CCNGG	1 cut(s)	813
BstSFI	CTRYAG	3 cut(s)	78, 636, 864
BstV1I	GCAGC	2 cut(s)	92, 95
BstV2I	GAAGAC	1 cut(s)	284
BstZI	CGGCCG	1 cut(s)	164
BsuRI	GGCC	5 cut(s)	66, 166, 296, 813, 1008
BtgI	CCRYGG	2 cut(s)	385, 441
BtsCI	GGATG	2 cut(s)	343, 789
BtsI	GCAGTG	1 cut(s)	456
BtsIMutI	CAGTG	3 cut(s)	456, 511, 1009
BveI	ACCTGC	2 cut(s)	386, 531
Cac8I	GCNNGC	2 cut(s)	762, 843
CciNI	GCGGCCGC	1 cut(s)	164
Cfr13I	GGNCC	5 cut(s)	295, 811, 1007, 1015, 1020
CviAII	CATG	5 cut(s)	30, 361, 442, 592, 761
DdeI	CTNAG	1 cut(s)	945
DpnI	GATC	2 cut(s)	438, 513
DpnII	GATC	2 cut(s)	436, 511
DrdI	GACNNNNNNGTC	1 cut(s)	647
DseDI	GACNNNNNNGTC	1 cut(s)	647
EaeI	YGGCCR	1 cut(s)	164
EagI	CGGCCG	1 cut(s)	164
EclXI	CGGCCG	1 cut(s)	164
Eco130I	CCWWGG	2 cut(s)	441, 1011
Eco24I	GRGCYC	1 cut(s)	1082
Eco31I	GGTCTC	2 cut(s)	174, 711
Eco47I	GGWCC	2 cut(s)	1015, 1020
Eco52I	CGGCCG	1 cut(s)	164
Eco57I	CTGAAG	1 cut(s)	296
Eco88I	CYCGRG	1 cut(s)	723
EcoNI	CCTNNNNNAGG	1 cut(s)	1027
EcoRII	CCWGG	1 cut(s)	813
EcoT14I	CCWWGG	2 cut(s)	441, 1011
EcoT38I	GRGCYC	1 cut(s)	1082
ErhI	CCWWGG	2 cut(s)	441, 1011
FaeI	CATG	5 cut(s)	33, 364, 445, 595, 764
FaqI	GGGAC	3 cut(s)	247, 386, 926
FatI	CATG	5 cut(s)	29, 360, 441, 591, 760
FauI	CCCGC	1 cut(s)	1027
FblI	GTMKAC	3 cut(s)	541, 639, 651
Fnu4HI	GCNGC	4 cut(s)	81, 84, 164, 167
FokI	GGATG	2 cut(s)	350, 796
FriOI	GRGCYC	1 cut(s)	1082
Fsp4HI	GCNGC	4 cut(s)	81, 84, 164, 167
GluI	GCNGC	4 cut(s)	81, 84, 164, 167
GsaI	CCCAGC	2 cut(s)	481, 732
GsuI	CTGGAG	1 cut(s)	686
HaeIII	GGCC	5 cut(s)	66, 166, 296, 813, 1008
HapII	CCGG	1 cut(s)	1018
Hin1II	CATG	5 cut(s)	33, 364, 445, 595, 764
HincII	GTYRAC	2 cut(s)	39, 542
HindII	GTYRAC	2 cut(s)	39, 542
HinfI	GANTC	6 cut(s)	7, 254, 271, 574, 821, 977
HpaII	CCGG	1 cut(s)	1018
HphI	GGTGA	1 cut(s)	635
Hpy166II	GTNNAC	4 cut(s)	39, 542, 640, 652
Hpy188I	TCNGA	4 cut(s)	276, 613, 716, 826
Hpy188III	TCNNGA	5 cut(s)	409, 434, 515, 571, 961
Hpy8I	GTNNAC	4 cut(s)	39, 542, 640, 652
Hpy99I	CGWCG	1 cut(s)	833
HpyAV	CCTTC	3 cut(s)	190, 772, 958
HpyCH4III	ACNGT	4 cut(s)	283, 559, 691, 925
HpyCH4V	TGCA	6 cut(s)	19, 80, 121, 381, 764, 916
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 387, 1086
HpyF3I	CTNAG	1 cut(s)	945
Hsp92II	CATG	5 cut(s)	33, 364, 445, 595, 764
Kzo9I	GATC	2 cut(s)	436, 511
LmnI	GCTCC	2 cut(s)	92, 1039
Lsp1109I	GCAGC	2 cut(s)	92, 95
LweI	GCATC	1 cut(s)	104
MaeIII	GTNAC	1 cut(s)	623
MalI	GATC	2 cut(s)	438, 513
MboI	GATC	2 cut(s)	436, 511
MboII	GAAGA	2 cut(s)	205, 289
MfeI	CAATTG	1 cut(s)	48
MhlI	GDGCHC	1 cut(s)	1082
MluCI	AATT	3 cut(s)	48, 708, 950
MlyI	GAGTC	3 cut(s)	263, 568, 986
MmeI	TCCRAC	1 cut(s)	302
MseI	TTAA	6 cut(s)	209, 500, 605, 857, 1050, 1074
MslI	CAYNNNNRTG	1 cut(s)	359
MspA1I	CMGCKG	1 cut(s)	477
MspI	CCGG	1 cut(s)	1018
MspR9I	CCNGG	1 cut(s)	815
MunI	CAATTG	1 cut(s)	48
MvaI	CCWGG	1 cut(s)	815
MwoI	GCNNNNNNNGC	3 cut(s)	92, 387, 1086
NcoI	CCATGG	1 cut(s)	441
NdeII	GATC	2 cut(s)	436, 511
NlaIII	CATG	5 cut(s)	33, 364, 445, 595, 764
NlaIV	GGNNCC	2 cut(s)	447, 1009
NmuCI	GTSAC	1 cut(s)	623
NotI	GCGGCCGC	1 cut(s)	164
NspI	RCATGY	1 cut(s)	764
PaeI	GCATGC	1 cut(s)	764
PaqCI	CACCTGC	1 cut(s)	386
PcsI	WCGNNNNNNNCGW	1 cut(s)	703
PfeI	GAWTC	3 cut(s)	7, 271, 821
PkrI	GCNGC	4 cut(s)	82, 85, 165, 168
Ple19I	CGATCG	1 cut(s)	514
PleI	GAGTC	3 cut(s)	262, 568, 985
PpsI	GAGTC	3 cut(s)	262, 568, 985
PshAI	GACNNNNGTC	1 cut(s)	1058
Psp6I	CCWGG	1 cut(s)	813
PspFI	CCCAGC	2 cut(s)	477, 728
PspGI	CCWGG	1 cut(s)	813
PspN4I	GGNNCC	2 cut(s)	447, 1009
PspPI	GGNCC	5 cut(s)	295, 811, 1007, 1015, 1020
PstI	CTGCAG	1 cut(s)	82
PvuI	CGATCG	1 cut(s)	514
PvuII	CAGCTG	1 cut(s)	477
RseI	CAYNNNNRTG	1 cut(s)	359
SalI	GTCGAC	1 cut(s)	540
SaqAI	TTAA	6 cut(s)	209, 500, 605, 857, 1050, 1074
SatI	GCNGC	4 cut(s)	81, 84, 164, 167
Sau3AI	GATC	2 cut(s)	436, 511
Sau96I	GGNCC	5 cut(s)	295, 811, 1007, 1015, 1020
SchI	GAGTC	3 cut(s)	263, 568, 986
ScrFI	CCNGG	1 cut(s)	815
SduI	GDGCHC	1 cut(s)	1082
SfaNI	GCATC	1 cut(s)	104
SfcI	CTRYAG	3 cut(s)	78, 636, 864
SinI	GGWCC	2 cut(s)	1015, 1020
SmiMI	CAYNNNNRTG	1 cut(s)	359
SmlI	CTYRAG	1 cut(s)	569
SmoI	CTYRAG	1 cut(s)	569
SphI	GCATGC	1 cut(s)	764
Sse9I	AATT	3 cut(s)	48, 708, 950
SsiI	CCGC	5 cut(s)	152, 163, 167, 351, 1034
SspI	AATATT	1 cut(s)	896
StyD4I	CCNGG	1 cut(s)	813
StyI	CCWWGG	2 cut(s)	441, 1011
TaaI	ACNGT	4 cut(s)	283, 559, 691, 925
TaqI	TCGA	5 cut(s)	125, 131, 486, 510, 541
TasI	AATT	3 cut(s)	48, 708, 950
TauI	GCSGC	2 cut(s)	166, 169
TfiI	GAWTC	3 cut(s)	7, 271, 821
Tru1I	TTAA	6 cut(s)	209, 500, 605, 857, 1050, 1074
Tru9I	TTAA	6 cut(s)	209, 500, 605, 857, 1050, 1074
TscAI	CASTG	3 cut(s)	463, 511, 1009
TseFI	GTSAC	1 cut(s)	623
TseI	GCWGC	2 cut(s)	80, 83
Tsp45I	GTSAC	1 cut(s)	623
TspDTI	ATGAA	1 cut(s)	15
TspRI	CASTG	3 cut(s)	463, 511, 1009
VpaK11BI	GGWCC	2 cut(s)	1015, 1020
XagI	CCTNNNNNAGG	1 cut(s)	1027
XapI	RAATTY	1 cut(s)	950
XceI	RCATGY	1 cut(s)	764
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1009
XmiI	GTMKAC	3 cut(s)	541, 639, 651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.