Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0011340

Physical Location & Seq

Genomic Coordinates Reverse (-)

7933968 .. 7936180

Gene Structure 2213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g07510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGATCACGATAATTCAGCTGCAATCCCAAGTTTCGTCATCATCTTGGTCTTGGCCAATCCCAATTAAGGTCCCAAAAGGCCGAATATGTGCGTCAACACGATCCTTGAATGTGCGATCATCAGGACGAGTAGGAATACGATGTGAGGTGGTGGCGGGGGGAACTGGAACAGAAATCGGAATGGGACCTTACACGGGGAGAGACCCAAATGTGAAGAAGGCGGAATGGTTAAGGCAGAAAGCCCCCCAGGGAAACAAGTATGAGGAGGTCAAGGAGTCCTTGTCCCGTTTGAATCTGAAGACGGTGTGTGAGGAGGCCCAATGCCCTAACATCGGCGAGTGTTGGAATGGTGGTGGGGATGGCATTTCCACTGCCACCATCATGCTTCTGGGCGACACCTGCACCCGTGGCTGTCGGTTCTGTGCTGTCAAGACCAGTCGGAACCCTCCACCTCCTGATCCCATGGAGCCTATCAACACTGCTATGGCCGTTGCCAGCTGGGGTGTTGATTATATTGTTTTAACGAGTGTCGATCGTGATGACCTGCCAGATGGTGGAAGTGGTCATTTTGCTCTTACTGTCCAAGCCCTCAAGAATCTGAAGCCTGATATCATGGTTGAGTGTTTAACTTCTGACTTTCGTGGTGACTTGACGGCTGTACACACTCTGCTGTACTCCGGACTTGATGTTTTTGCACACAACATTGAGACCGTCAAACGACTACAACGAATTGTCAGAGACCCTCGGGCTGGGTATGAGCAAAGCTTATCTGTTCTAAGACATGCAAAACAAAGCAAAAGGGGGATGATAACAAAAACTTCTATAATGCTGGGCCTGGGAGAAACAGACGATGAGTTGAAGGAAGCCATGGCTGATTTAAGGGCTATAGATGTTGATATTTTGACGCTTGGGCAATATTTACAGCCAACTCCATTACATTTGACTGTCAAAGAATATGTCTCGCCTGAGAAATTCGTTTTCTGGAAGGAATATGGGGAGTCTATTGGATTTCGTTATGTAGCCAGTGGGCCCTTGGTCCGGTCCTCGTACAGGGCAGGGGAGCTGTTTGTTAAAACAATGGTCAGGGAAATGGCTAACGGCTCTTCTGGCGTATTTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006464 GO:0006629 GO:0006631 GO:0006633 GO:0006732 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009106 GO:0009107 GO:0009108 GO:0009249 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016053 GO:0016740 GO:0016782 GO:0016783 GO:0016992 GO:0018065 GO:0018130 GO:0018193 GO:0018205 GO:0019538 GO:0019752 GO:0032787 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0051186 GO:0051188 GO:0051604 GO:0070283 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00785 ko01100 map00785 map01100

Pfam Domains

Protein Families

LIAS_N Radical_SAM rRNA_methylase

Protein Analysis

374

Amino Acids

40.97

Weight (kDa)

8.3

Isoelectric Point (pI)

39.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIAS_N	PF16881	73 - 108	1e-08	N-terminal domain of lipoyl synthase of Radical_SAM family
Radical_SAM	PF04055	130 - 292	4e-24	Radical SAM superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011340)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08415
fragaria_vesca	FvH4_4g37350
malus_domestica	MD12G1087800.v1.1 MD13G1000600.v1.1 MD16G1005000.v1.1
prunus_persica	Prupe.1G352000_v2.0.a1 Prupe.1G352000_v2.0.a1 Prupe.1G352000_v2.0.a1 Prupe.1G352000_v2.0.a1
pyrus_communis	pycom12g07510 pycom13g00060
rosa_chinensis	RchiOBHm_Chr4g0447211
rosa_laevigata	RLG00000005596
rosa_multiflora	Rmu_ssc0000396.1_g000001
rosa_rugosa	Rorug04G0379000
rosa_samantha	Rh4AG440300 Rh4BG449300 Rh4CG466300 Rh4DG447800
rosa_wichuraiana	Rw4G037670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	407
Acc36I	ACCTGC	2 cut(s)	407, 552
AccB7I	CCANNNNNTGG	1 cut(s)	554
AccIII	TCCGGA	1 cut(s)	677
AciI	CCGC	2 cut(s)	155, 221
AclWI	GGATC	2 cut(s)	96, 452
AcoI	YGGCCR	2 cut(s)	53, 486
AcsI	RAATTY	1 cut(s)	971
AcuI	CTGAAG	2 cut(s)	317, 620
AfaI	GTAC	3 cut(s)	660, 674, 1049
AfiI	CCNNNNNNNGG	7 cut(s)	67, 194, 332, 554, 749, 1038, 1050
AgsI	TTSAA	3 cut(s)	109, 292, 859
AjnI	CCWGG	2 cut(s)	246, 834
AluBI	AGCT	4 cut(s)	19, 498, 765, 1063
AluI	AGCT	4 cut(s)	19, 498, 765, 1063
Alw26I	GTCTC	4 cut(s)	195, 701, 732, 964
AlwI	GGATC	2 cut(s)	96, 452
Ama87I	CYCGRG	1 cut(s)	744
Aor13HI	TCCGGA	1 cut(s)	677
AoxI	GGCC	6 cut(s)	53, 79, 315, 486, 832, 1028
ApaI	GGGCCC	1 cut(s)	1032
ApeKI	GCWGC	1 cut(s)	19
ApoI	RAATTY	1 cut(s)	971
ArsI	GACNNNNNNTTYG	2 cut(s)	942, 974
AspS9I	GGNCC	8 cut(s)	70, 185, 316, 832, 1028, 1029, 1036, 1041
AsuHPI	GGTGA	1 cut(s)	656
AvaI	CYCGRG	1 cut(s)	744
AvaII	GGWCC	4 cut(s)	70, 185, 1036, 1041
BaeGI	GKGCMC	1 cut(s)	1032
BalI	TGGCCA	1 cut(s)	55
BanII	GRGCYC	1 cut(s)	1032
BbsI	GAAGAC	1 cut(s)	305
BbvI	GCAGC	1 cut(s)	6
BccI	CCATC	3 cut(s)	353, 386, 545
BceAI	ACGGC	3 cut(s)	473, 669, 1114
BciT130I	CCWGG	2 cut(s)	248, 836
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	4 cut(s)	195, 701, 732, 964
BfmI	CTRYAG	1 cut(s)	885
BfuAI	ACCTGC	2 cut(s)	407, 552
BisI	GCNGC	1 cut(s)	20
BlsI	GCNGC	1 cut(s)	21
Bme1390I	CCNGG	2 cut(s)	248, 836
Bme18I	GGWCC	4 cut(s)	70, 185, 1036, 1041
BmeT110I	CYCGRG	1 cut(s)	744
BmgT120I	GGNCC	8 cut(s)	70, 185, 316, 832, 1028, 1029, 1036, 1041
BmiI	GGNNCC	5 cut(s)	72, 186, 443, 468, 1030
BmrFI	CCNGG	2 cut(s)	248, 836
BpiI	GAAGAC	1 cut(s)	305
BpuEI	CTTGAG	1 cut(s)	575
BsaI	GGTCTC	3 cut(s)	195, 701, 732
BsaJI	CCNNGG	8 cut(s)	246, 247, 406, 462, 743, 835, 867, 1032
BsaWI	WCCGGW	2 cut(s)	677, 1038
BsaXI	ACNNNNNCTCC	2 cut(s)	266, 296
Bsc4I	CCNNNNNNNGG	7 cut(s)	67, 194, 332, 554, 749, 1038, 1050
Bse1I	ACTGG	3 cut(s)	169, 435, 1023
BseAI	TCCGGA	1 cut(s)	677
BseBI	CCWGG	2 cut(s)	248, 836
BseDI	CCNNGG	8 cut(s)	246, 247, 406, 462, 743, 835, 867, 1032
BseGI	GGATG	2 cut(s)	364, 810
BseLI	CCNNNNNNNGG	7 cut(s)	67, 194, 332, 554, 749, 1038, 1050
BseMII	CTCAG	1 cut(s)	957
BseNI	ACTGG	3 cut(s)	169, 435, 1023
BseRI	GAGGAG	2 cut(s)	278, 326
BseSI	GKGCMC	1 cut(s)	1032
BseXI	GCAGC	1 cut(s)	6
BseYI	CCCAGC	3 cut(s)	498, 749, 829
BsgI	GTGCAG	1 cut(s)	385
Bsh1285I	CGRYCG	1 cut(s)	535
BshFI	GGCC	6 cut(s)	55, 81, 317, 488, 834, 1030
BsiEI	CGRYCG	1 cut(s)	535
BsiHKCI	CYCGRG	1 cut(s)	744
BsiSI	CCGG	2 cut(s)	678, 1039
BslFI	GGGAC	3 cut(s)	56, 198, 268
BslI	CCNNNNNNNGG	7 cut(s)	67, 194, 332, 554, 749, 1038, 1050
BsmAI	GTCTC	4 cut(s)	195, 701, 732, 964
BsmFI	GGGAC	3 cut(s)	56, 198, 268
BsnI	GGCC	6 cut(s)	55, 81, 317, 488, 834, 1030
Bso31I	GGTCTC	3 cut(s)	195, 701, 732
BsoBI	CYCGRG	1 cut(s)	744
Bsp120I	GGGCCC	1 cut(s)	1028
Bsp1286I	GDGCHC	1 cut(s)	1032
Bsp13I	TCCGGA	1 cut(s)	677
Bsp1407I	TGTACA	1 cut(s)	658
Bsp143I	GATC	5 cut(s)	3, 101, 116, 457, 532
Bsp19I	CCATGG	2 cut(s)	462, 867
BspACI	CCGC	2 cut(s)	155, 221
BspANI	GGCC	6 cut(s)	55, 81, 317, 488, 834, 1030
BspCNI	CTCAG	1 cut(s)	958
BspEI	TCCGGA	1 cut(s)	677
BspLI	GGNNCC	5 cut(s)	72, 186, 443, 468, 1030
BspMI	ACCTGC	2 cut(s)	407, 552
BspPI	GGATC	2 cut(s)	96, 452
BspQI	GCTCTTC	1 cut(s)	1108
BspTNI	GGTCTC	3 cut(s)	195, 701, 732
BsrGI	TGTACA	1 cut(s)	658
BsrI	ACTGG	3 cut(s)	169, 435, 1023
BssECI	CCNNGG	8 cut(s)	246, 247, 406, 462, 743, 835, 867, 1032
BssMI	GATC	5 cut(s)	3, 101, 116, 457, 532
BssT1I	CCWWGG	3 cut(s)	462, 867, 1032
Bst2UI	CCWGG	2 cut(s)	248, 836
Bst4CI	ACNGT	4 cut(s)	304, 580, 712, 946
Bst6I	CTCTTC	1 cut(s)	1108
BstAUI	TGTACA	1 cut(s)	658
BstC8I	GCNNGC	1 cut(s)	496
BstDEI	CTNAG	2 cut(s)	776, 966
BstDSI	CCRYGG	3 cut(s)	406, 462, 867
BstENI	CCTNNNNNAGG	1 cut(s)	1048
BstF5I	GGATG	2 cut(s)	364, 810
BstKTI	GATC	5 cut(s)	6, 104, 119, 460, 535
BstMAI	GTCTC	4 cut(s)	195, 701, 732, 964
BstMBI	GATC	5 cut(s)	3, 101, 116, 457, 532
BstMCI	CGRYCG	1 cut(s)	535
BstMWI	GCNNNNNNNGC	3 cut(s)	399, 408, 1107
BstNI	CCWGG	2 cut(s)	248, 836
BstNSI	RCATGY	1 cut(s)	785
BstSCI	CCNGG	2 cut(s)	246, 834
BstSFI	CTRYAG	1 cut(s)	885
BstSLI	GKGCMC	1 cut(s)	1032
BstV1I	GCAGC	1 cut(s)	6
BstV2I	GAAGAC	1 cut(s)	305
BsuRI	GGCC	6 cut(s)	55, 81, 317, 488, 834, 1030
BtgI	CCRYGG	3 cut(s)	406, 462, 867
BtsCI	GGATG	2 cut(s)	364, 810
BtsI	GCAGTG	2 cut(s)	369, 477
BtsIMutI	CAGTG	3 cut(s)	369, 477, 1030
BveI	ACCTGC	2 cut(s)	407, 552
Cac8I	GCNNGC	1 cut(s)	496
Cfr13I	GGNCC	8 cut(s)	70, 185, 316, 832, 1028, 1029, 1036, 1041
CseI	GACGC	2 cut(s)	81, 913
Csp6I	GTAC	3 cut(s)	659, 673, 1048
CviAII	CATG	5 cut(s)	382, 463, 613, 782, 868
CviQI	GTAC	3 cut(s)	659, 673, 1048
DdeI	CTNAG	2 cut(s)	776, 966
DpnI	GATC	5 cut(s)	5, 103, 118, 459, 534
DpnII	GATC	5 cut(s)	3, 101, 116, 457, 532
EaeI	YGGCCR	2 cut(s)	53, 486
Eam1104I	CTCTTC	1 cut(s)	1108
EarI	CTCTTC	1 cut(s)	1108
EciI	GGCGGA	1 cut(s)	236
Eco130I	CCWWGG	3 cut(s)	462, 867, 1032
Eco24I	GRGCYC	1 cut(s)	1032
Eco31I	GGTCTC	3 cut(s)	195, 701, 732
Eco32I	GATATC	1 cut(s)	610
Eco47I	GGWCC	4 cut(s)	70, 185, 1036, 1041
Eco57I	CTGAAG	2 cut(s)	317, 620
Eco88I	CYCGRG	1 cut(s)	744
EcoNI	CCTNNNNNAGG	1 cut(s)	1048
EcoO109I	RGGNCCY	3 cut(s)	70, 185, 1029
EcoRII	CCWGG	2 cut(s)	246, 834
EcoRV	GATATC	1 cut(s)	610
EcoT14I	CCWWGG	3 cut(s)	462, 867, 1032
EcoT38I	GRGCYC	1 cut(s)	1032
ErhI	CCWWGG	3 cut(s)	462, 867, 1032
FaeI	CATG	5 cut(s)	385, 466, 616, 785, 871
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FaqI	GGGAC	3 cut(s)	56, 198, 268
FatI	CATG	5 cut(s)	381, 462, 612, 781, 867
FauI	CCCGC	1 cut(s)	148
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	20
FokI	GGATG	2 cut(s)	371, 817
FriOI	GRGCYC	1 cut(s)	1032
Fsp4HI	GCNGC	1 cut(s)	20
GluI	GCNGC	1 cut(s)	20
GsaI	CCCAGC	3 cut(s)	502, 753, 833
HaeIII	GGCC	6 cut(s)	55, 81, 317, 488, 834, 1030
HapII	CCGG	2 cut(s)	678, 1039
HgaI	GACGC	2 cut(s)	81, 913
Hin1II	CATG	5 cut(s)	385, 466, 616, 785, 871
HincII	GTYRAC	1 cut(s)	96
HindII	GTYRAC	1 cut(s)	96
HindIII	AAGCTT	1 cut(s)	763
HinfI	GANTC	4 cut(s)	275, 292, 595, 998
HpaII	CCGG	2 cut(s)	678, 1039
HphI	GGTGA	1 cut(s)	656
Hpy166II	GTNNAC	2 cut(s)	96, 661
Hpy188I	TCNGA	6 cut(s)	179, 297, 441, 600, 634, 737
Hpy188III	TCNNGA	8 cut(s)	7, 123, 430, 455, 536, 592, 678, 982
Hpy8I	GTNNAC	2 cut(s)	96, 661
HpyAV	CCTTC	3 cut(s)	211, 853, 979
HpyCH4III	ACNGT	4 cut(s)	304, 580, 712, 946
HpyCH4V	TGCA	4 cut(s)	22, 402, 695, 785
HpyF10VI	GCNNNNNNNGC	3 cut(s)	399, 408, 1107
HpyF3I	CTNAG	2 cut(s)	776, 966
Hsp92II	CATG	5 cut(s)	385, 466, 616, 785, 871
Kpn2I	TCCGGA	1 cut(s)	677
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	5 cut(s)	3, 101, 116, 457, 532
LguI	GCTCTTC	1 cut(s)	1108
LmnI	GCTCC	2 cut(s)	466, 1060
Lsp1109I	GCAGC	1 cut(s)	6
MaeIII	GTNAC	1 cut(s)	644
MalI	GATC	5 cut(s)	5, 103, 118, 459, 534
MboI	GATC	5 cut(s)	3, 101, 116, 457, 532
MboII	GAAGA	3 cut(s)	226, 310, 1095
MhlI	GDGCHC	1 cut(s)	1032
MlsI	TGGCCA	1 cut(s)	55
MluCI	AATT	4 cut(s)	12, 63, 729, 971
MluNI	TGGCCA	1 cut(s)	55
MlyI	GAGTC	2 cut(s)	284, 1007
MmeI	TCCRAC	2 cut(s)	323, 419
Mox20I	TGGCCA	1 cut(s)	55
MroI	TCCGGA	1 cut(s)	677
MscI	TGGCCA	1 cut(s)	55
MseI	TTAA	6 cut(s)	66, 230, 521, 626, 878, 1071
MslI	CAYNNNNRTG	2 cut(s)	380, 482
Msp20I	TGGCCA	1 cut(s)	55
MspA1I	CMGCKG	2 cut(s)	19, 498
MspI	CCGG	2 cut(s)	678, 1039
MspR9I	CCNGG	2 cut(s)	248, 836
MvaI	CCWGG	2 cut(s)	248, 836
MwoI	GCNNNNNNNGC	3 cut(s)	399, 408, 1107
NcoI	CCATGG	2 cut(s)	462, 867
NdeII	GATC	5 cut(s)	3, 101, 116, 457, 532
NlaIII	CATG	5 cut(s)	385, 466, 616, 785, 871
NlaIV	GGNNCC	5 cut(s)	72, 186, 443, 468, 1030
NmuCI	GTSAC	1 cut(s)	644
NspI	RCATGY	1 cut(s)	785
PaqCI	CACCTGC	1 cut(s)	407
PasI	CCCWGGG	1 cut(s)	247
PciSI	GCTCTTC	1 cut(s)	1108
PcsI	WCGNNNNNNNCGW	1 cut(s)	724
PfeI	GAWTC	2 cut(s)	292, 595
PflMI	CCANNNNNTGG	1 cut(s)	554
PkrI	GCNGC	1 cut(s)	21
Ple19I	CGATCG	1 cut(s)	535
PleI	GAGTC	2 cut(s)	283, 1006
PpsI	GAGTC	2 cut(s)	283, 1006
PpuMI	RGGWCCY	2 cut(s)	70, 185
Psp5II	RGGWCCY	2 cut(s)	70, 185
Psp6I	CCWGG	2 cut(s)	246, 834
PspFI	CCCAGC	3 cut(s)	498, 749, 829
PspGI	CCWGG	2 cut(s)	246, 834
PspN4I	GGNNCC	5 cut(s)	72, 186, 443, 468, 1030
PspOMI	GGGCCC	1 cut(s)	1028
PspPI	GGNCC	8 cut(s)	70, 185, 316, 832, 1028, 1029, 1036, 1041
PspPPI	RGGWCCY	2 cut(s)	70, 185
PvuI	CGATCG	1 cut(s)	535
PvuII	CAGCTG	2 cut(s)	19, 498
RsaI	GTAC	3 cut(s)	660, 674, 1049
RsaNI	GTAC	3 cut(s)	659, 673, 1048
RseI	CAYNNNNRTG	2 cut(s)	380, 482
SapI	GCTCTTC	1 cut(s)	1108
SaqAI	TTAA	6 cut(s)	66, 230, 521, 626, 878, 1071
SatI	GCNGC	1 cut(s)	20
Sau3AI	GATC	5 cut(s)	3, 101, 116, 457, 532
Sau96I	GGNCC	8 cut(s)	70, 185, 316, 832, 1028, 1029, 1036, 1041
SchI	GAGTC	2 cut(s)	284, 1007
ScrFI	CCNGG	2 cut(s)	248, 836
SduI	GDGCHC	1 cut(s)	1032
SfcI	CTRYAG	1 cut(s)	885
SinI	GGWCC	4 cut(s)	70, 185, 1036, 1041
SmiMI	CAYNNNNRTG	2 cut(s)	380, 482
SmlI	CTYRAG	1 cut(s)	590
SmoI	CTYRAG	1 cut(s)	590
Sse9I	AATT	4 cut(s)	12, 63, 729, 971
SsiI	CCGC	2 cut(s)	155, 221
SspI	AATATT	1 cut(s)	917
StyD4I	CCNGG	2 cut(s)	246, 834
StyI	CCWWGG	3 cut(s)	462, 867, 1032
TaaI	ACNGT	4 cut(s)	304, 580, 712, 946
TaqI	TCGA	1 cut(s)	531
TasI	AATT	4 cut(s)	12, 63, 729, 971
TatI	WGTACW	2 cut(s)	658, 672
TfiI	GAWTC	2 cut(s)	292, 595
Tru1I	TTAA	6 cut(s)	66, 230, 521, 626, 878, 1071
Tru9I	TTAA	6 cut(s)	66, 230, 521, 626, 878, 1071
TscAI	CASTG	3 cut(s)	376, 484, 1030
TseFI	GTSAC	1 cut(s)	644
TseI	GCWGC	1 cut(s)	19
Tsp45I	GTSAC	1 cut(s)	644
TspRI	CASTG	3 cut(s)	376, 484, 1030
Van91I	CCANNNNNTGG	1 cut(s)	554
VpaK11BI	GGWCC	4 cut(s)	70, 185, 1036, 1041
XagI	CCTNNNNNAGG	1 cut(s)	1048
XapI	RAATTY	1 cut(s)	971
XceI	RCATGY	1 cut(s)	785
XcmI	CCANNNNNNNNNTGG	2 cut(s)	385, 1030

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.