Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0011340

Physical Location & Seq

Genomic Coordinates Forward (+)

33847647 .. 33849834

Gene Structure 2188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g37350.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGATTTCGAGAGCTTGTTGTGGTTCAATTCCAATCGTAAAACCAGCTCGCGGAGTACGATGCGAGGCGGTGGTGGGGCCGTTCACGGGGAGAGACCCGAATGTGAAGAAGGCGGGATGGCTGAGACAGAAGGCGGCACAGGGCATCAAGTATGAGGAGGTGAAGGAGACGTTGTCCCGTTTGAATCTCAAGACTGTGTGCGAGGAGGCCCAGTGCCCCAACATCGGCGAGTGCTGGAATGGAGGTGCTGACGGCATTTCCACTGCCACCATCATGGTCCTCGGAGACACCTGCACTCGTGGCTGCCGTTTCTGTGCCGTCAAGACCAGCCGAACCCCTCCCCCTCCCGATCCCATGGAGCCCATCAACACCGCCATGGCCGTTGCCAGCTGGGGTGTCGATTATATTGTTTTAACCAGCGTCGATCGCGATGACCTGCCCGATGGTGGCAGTGGACATTTTGCCCAGACCGTCAAGGCCCTCAAGGATCTCAAGCCTGACATCATGGTTGAGTGCTTAACTTCTGACTTTCGGGGTGACTTGACCGCCGTCCACACTTTGCTACACTCCGGCCTTGATGTCTTTGCACACAACGTTGAGACTGTCAAACGCCTCCAGCGAATTGTGAGGGATCCTCGCGCTGGGTATGAGCAGAGCTTATCTGTTCTCAACCATGCAAAACAAAGCAAGAAGGGAATGATTACAAAAACTTCTATAATGTTGGGCCTTGGAGAATCAGACGATGAGTTGAAAGAAGCCATGGCTGATTTAAGGGCTATAGATGTGGATATACTGACACTTGGACAGTATTTACAGCCAACTCCACTGCATTTGACCGTCAAAGAATATGTCACTCCTGAGAAGTTCAATTTTTGGAAGGAATATGGGGAGTCTATTGGATTTCGTTATGTAGCCAGTGGGCCCTTGGTTCGATCCTCGTATAGGGCTGGGGAGCTATTTGTTAAGACAATGGTCAGGGAAAGTGCTGGAGCTATTCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006464 GO:0006629 GO:0006631 GO:0006633 GO:0006732 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009106 GO:0009107 GO:0009108 GO:0009249 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016053 GO:0016740 GO:0016782 GO:0016783 GO:0016992 GO:0018065 GO:0018130 GO:0018193 GO:0018205 GO:0019538 GO:0019752 GO:0032787 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0051186 GO:0051188 GO:0051604 GO:0070283 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00785 ko01100 map00785 map01100

Pfam Domains

Protein Families

LIAS_N Radical_SAM

Protein Analysis

334

Amino Acids

36.48

Weight (kDa)

7.99

Isoelectric Point (pI)

27.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIAS_N	PF16881	39 - 72	8.2e-07	N-terminal domain of lipoyl synthase of Radical_SAM family
Radical_SAM	PF04055	93 - 256	1.4e-23	Radical SAM superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011340)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08415
fragaria_vesca	FvH4_4g37350
malus_domestica	MD12G1087800.v1.1 MD13G1000600.v1.1 MD16G1005000.v1.1
prunus_persica	Prupe.1G352000_v2.0.a1 Prupe.1G352000_v2.0.a1 Prupe.1G352000_v2.0.a1 Prupe.1G352000_v2.0.a1
pyrus_communis	pycom12g07510 pycom13g00060
rosa_chinensis	RchiOBHm_Chr4g0447211
rosa_laevigata	RLG00000005596
rosa_multiflora	Rmu_ssc0000396.1_g000001
rosa_rugosa	Rorug04G0379000
rosa_samantha	Rh4AG440300 Rh4BG449300 Rh4CG466300 Rh4DG447800
rosa_wichuraiana	Rw4G037670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	299
Acc36I	ACCTGC	2 cut(s)	299, 444
AccII	CGCG	3 cut(s)	51, 429, 639
AciI	CCGC	6 cut(s)	51, 68, 113, 134, 372, 546
AclI	AACGTT	1 cut(s)	594
AclWI	GGATC	5 cut(s)	344, 495, 626, 639, 927
AcoI	YGGCCR	1 cut(s)	378
AfaI	GTAC	1 cut(s)	57
AfiI	CCNNNNNNNGG	6 cut(s)	50, 86, 224, 446, 641, 942
AgsI	TTSAA	4 cut(s)	27, 184, 751, 868
AluBI	AGCT	6 cut(s)	14, 47, 390, 657, 955, 992
AluI	AGCT	6 cut(s)	14, 47, 390, 657, 955, 992
Alw26I	GTCTC	5 cut(s)	87, 118, 161, 279, 593
AlwI	GGATC	5 cut(s)	344, 495, 626, 639, 927
AoxI	GGCC	7 cut(s)	77, 207, 378, 477, 571, 724, 920
ApaI	GGGCCC	1 cut(s)	924
ApeKI	GCWGC	1 cut(s)	303
ArsI	GACNNNNNNTTYG	2 cut(s)	834, 866
AspLEI	GCGC	1 cut(s)	641
AspS9I	GGNCC	7 cut(s)	77, 208, 277, 478, 724, 920, 921
AsuHPI	GGTGA	2 cut(s)	172, 548
AvaII	GGWCC	1 cut(s)	277
BaeGI	GKGCMC	2 cut(s)	218, 924
BamHI	GGATCC	1 cut(s)	631
BanII	GRGCYC	2 cut(s)	363, 924
BauI	CACGAG	1 cut(s)	297
BbvI	GCAGC	1 cut(s)	290
BccI	CCATC	4 cut(s)	111, 278, 371, 437
BceAI	ACGGC	6 cut(s)	64, 268, 291, 302, 365, 533
BcoDI	GTCTC	5 cut(s)	87, 118, 161, 279, 593
BfmI	CTRYAG	1 cut(s)	777
BfuAI	ACCTGC	2 cut(s)	299, 444
BisI	GCNGC	2 cut(s)	135, 304
BlsI	GCNGC	2 cut(s)	136, 305
Bme18I	GGWCC	1 cut(s)	277
BmgT120I	GGNCC	7 cut(s)	77, 208, 277, 478, 724, 920, 921
BmiI	GGNNCC	4 cut(s)	78, 360, 633, 922
BmrI	ACTGGG	1 cut(s)	205
BmsI	GCATC	2 cut(s)	50, 153
BmuI	ACTGGG	1 cut(s)	205
BoxI	GACNNNNGTC	2 cut(s)	548, 971
BplI	GAGNNNNNCTC	2 cut(s)	619, 651
BpmI	CTGGAG	1 cut(s)	599
BpuEI	CTTGAG	3 cut(s)	173, 467, 476
BsaI	GGTCTC	1 cut(s)	87
BsaJI	CCNNGG	6 cut(s)	280, 354, 375, 727, 759, 924
BsaXI	ACNNNNNCTCC	4 cut(s)	158, 188, 197, 227
Bsc4I	CCNNNNNNNGG	6 cut(s)	50, 86, 224, 446, 641, 942
Bse1I	ACTGG	2 cut(s)	211, 915
BseDI	CCNNGG	6 cut(s)	280, 354, 375, 727, 759, 924
BseGI	GGATG	1 cut(s)	122
BseLI	CCNNNNNNNGG	6 cut(s)	50, 86, 224, 446, 641, 942
BseMII	CTCAG	2 cut(s)	113, 849
BseNI	ACTGG	2 cut(s)	211, 915
BseRI	GAGGAG	2 cut(s)	170, 218
BseSI	GKGCMC	2 cut(s)	218, 924
BseXI	GCAGC	1 cut(s)	290
BseYI	CCCAGC	3 cut(s)	390, 641, 947
BsgI	GTGCAG	1 cut(s)	277
Bsh1236I	CGCG	3 cut(s)	51, 429, 639
Bsh1285I	CGRYCG	1 cut(s)	427
BshFI	GGCC	7 cut(s)	79, 209, 380, 479, 573, 726, 922
BsiEI	CGRYCG	1 cut(s)	427
BsiSI	CCGG	1 cut(s)	570
BslFI	GGGAC	1 cut(s)	160
BslI	CCNNNNNNNGG	6 cut(s)	50, 86, 224, 446, 641, 942
BsmAI	GTCTC	5 cut(s)	87, 118, 161, 279, 593
BsmBI	CGTCTC	1 cut(s)	161
BsmFI	GGGAC	1 cut(s)	160
BsnI	GGCC	7 cut(s)	79, 209, 380, 479, 573, 726, 922
Bso31I	GGTCTC	1 cut(s)	87
Bsp120I	GGGCCC	1 cut(s)	920
Bsp1286I	GDGCHC	3 cut(s)	218, 363, 924
Bsp143I	GATC	5 cut(s)	349, 424, 487, 631, 932
Bsp19I	CCATGG	3 cut(s)	354, 375, 759
Bsp68I	TCGCGA	1 cut(s)	429
BspACI	CCGC	6 cut(s)	51, 68, 113, 134, 372, 546
BspANI	GGCC	7 cut(s)	79, 209, 380, 479, 573, 726, 922
BspCNI	CTCAG	2 cut(s)	114, 850
BspFNI	CGCG	3 cut(s)	51, 429, 639
BspLI	GGNNCC	4 cut(s)	78, 360, 633, 922
BspMI	ACCTGC	2 cut(s)	299, 444
BspPI	GGATC	5 cut(s)	344, 495, 626, 639, 927
BspTNI	GGTCTC	1 cut(s)	87
BsrI	ACTGG	2 cut(s)	211, 915
BssECI	CCNNGG	6 cut(s)	280, 354, 375, 727, 759, 924
BssMI	GATC	5 cut(s)	349, 424, 487, 631, 932
BssSI	CACGAG	1 cut(s)	297
BssT1I	CCWWGG	5 cut(s)	354, 375, 727, 759, 924
Bst2BI	CACGAG	1 cut(s)	297
Bst4CI	ACNGT	5 cut(s)	196, 472, 604, 807, 838
BstC8I	GCNNGC	2 cut(s)	49, 388
BstDEI	CTNAG	2 cut(s)	122, 858
BstDSI	CCRYGG	3 cut(s)	354, 375, 759
BstENI	CCTNNNNNAGG	1 cut(s)	940
BstF5I	GGATG	1 cut(s)	122
BstFNI	CGCG	3 cut(s)	51, 429, 639
BstHHI	GCGC	1 cut(s)	641
BstKTI	GATC	5 cut(s)	352, 427, 490, 634, 935
BstMAI	GTCTC	5 cut(s)	87, 118, 161, 279, 593
BstMBI	GATC	5 cut(s)	349, 424, 487, 631, 932
BstMCI	CGRYCG	1 cut(s)	427
BstMWI	GCNNNNNNNGC	2 cut(s)	300, 426
BstPAI	GACNNNNGTC	2 cut(s)	548, 971
BstSFI	CTRYAG	1 cut(s)	777
BstSLI	GKGCMC	2 cut(s)	218, 924
BstUI	CGCG	3 cut(s)	51, 429, 639
BstV1I	GCAGC	1 cut(s)	290
BstX2I	RGATCY	2 cut(s)	487, 631
BstXI	CCANNNNNNTGG	1 cut(s)	274
BstYI	RGATCY	2 cut(s)	487, 631
BsuRI	GGCC	7 cut(s)	79, 209, 380, 479, 573, 726, 922
BtgI	CCRYGG	3 cut(s)	354, 375, 759
BtgZI	GCGATG	1 cut(s)	444
BtsCI	GGATG	1 cut(s)	122
BtsI	GCAGTG	3 cut(s)	261, 457, 824
BtsIMutI	CAGTG	5 cut(s)	218, 261, 457, 824, 922
BtuMI	TCGCGA	1 cut(s)	429
BveI	ACCTGC	2 cut(s)	299, 444
Cac8I	GCNNGC	2 cut(s)	49, 388
CfoI	GCGC	1 cut(s)	641
Cfr13I	GGNCC	7 cut(s)	77, 208, 277, 478, 724, 920, 921
CseI	GACGC	1 cut(s)	409
Csp6I	GTAC	1 cut(s)	56
CspCI	CAANNNNNGTGG	2 cut(s)	813, 848
CviAII	CATG	6 cut(s)	274, 355, 376, 505, 674, 760
CviQI	GTAC	1 cut(s)	56
DdeI	CTNAG	2 cut(s)	122, 858
DpnI	GATC	5 cut(s)	351, 426, 489, 633, 934
DpnII	GATC	5 cut(s)	349, 424, 487, 631, 932
EaeI	YGGCCR	1 cut(s)	378
Eco130I	CCWWGG	5 cut(s)	354, 375, 727, 759, 924
Eco24I	GRGCYC	2 cut(s)	363, 924
Eco31I	GGTCTC	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	277
EcoNI	CCTNNNNNAGG	1 cut(s)	940
EcoO109I	RGGNCCY	2 cut(s)	478, 921
EcoT14I	CCWWGG	5 cut(s)	354, 375, 727, 759, 924
EcoT38I	GRGCYC	2 cut(s)	363, 924
ErhI	CCWWGG	5 cut(s)	354, 375, 727, 759, 924
Esp3I	CGTCTC	1 cut(s)	161
FaeI	CATG	6 cut(s)	277, 358, 379, 508, 677, 763
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	6 cut(s)	273, 354, 375, 504, 673, 759
FauI	CCCGC	1 cut(s)	106
Fnu4HI	GCNGC	2 cut(s)	135, 304
FokI	GGATG	1 cut(s)	129
FriOI	GRGCYC	2 cut(s)	363, 924
Fsp4HI	GCNGC	2 cut(s)	135, 304
GlaI	GCGC	1 cut(s)	640
GluI	GCNGC	2 cut(s)	135, 304
GsaI	CCCAGC	3 cut(s)	394, 645, 951
GsuI	CTGGAG	1 cut(s)	599
HaeIII	GGCC	7 cut(s)	79, 209, 380, 479, 573, 726, 922
HapII	CCGG	1 cut(s)	570
HgaI	GACGC	1 cut(s)	409
HhaI	GCGC	1 cut(s)	641
Hin1II	CATG	6 cut(s)	277, 358, 379, 508, 677, 763
Hin6I	GCGC	1 cut(s)	639
HinP1I	GCGC	1 cut(s)	639
HinfI	GANTC	3 cut(s)	184, 734, 890
HpaII	CCGG	1 cut(s)	570
HphI	GGTGA	2 cut(s)	172, 548
Hpy166II	GTNNAC	3 cut(s)	84, 455, 553
Hpy188I	TCNGA	3 cut(s)	284, 526, 739
Hpy188III	TCNNGA	6 cut(s)	9, 190, 322, 347, 428, 857
Hpy8I	GTNNAC	3 cut(s)	84, 455, 553
Hpy99I	CGWCG	1 cut(s)	425
HpyAV	CCTTC	5 cut(s)	103, 124, 157, 685, 871
HpyCH4III	ACNGT	5 cut(s)	196, 472, 604, 807, 838
HpyCH4IV	ACGT	2 cut(s)	170, 594
HpyCH4V	TGCA	4 cut(s)	294, 587, 677, 829
HpyF10VI	GCNNNNNNNGC	2 cut(s)	300, 426
HpyF3I	CTNAG	2 cut(s)	122, 858
HpySE526I	ACGT	2 cut(s)	170, 594
Hsp92II	CATG	6 cut(s)	277, 358, 379, 508, 677, 763
HspAI	GCGC	1 cut(s)	639
Kzo9I	GATC	5 cut(s)	349, 424, 487, 631, 932
LmnI	GCTCC	3 cut(s)	358, 952, 989
Lsp1109I	GCAGC	1 cut(s)	290
LweI	GCATC	2 cut(s)	50, 153
MaeII	ACGT	2 cut(s)	170, 594
MaeIII	GTNAC	2 cut(s)	536, 850
MalI	GATC	5 cut(s)	351, 426, 489, 633, 934
MboI	GATC	5 cut(s)	349, 424, 487, 631, 932
MboII	GAAGA	1 cut(s)	118
MflI	RGATCY	2 cut(s)	487, 631
MhlI	GDGCHC	3 cut(s)	218, 363, 924
MluCI	AATT	3 cut(s)	27, 621, 868
MlyI	GAGTC	1 cut(s)	899
MseI	TTAA	4 cut(s)	413, 518, 770, 963
MslI	CAYNNNNRTG	2 cut(s)	272, 374
MspA1I	CMGCKG	1 cut(s)	390
MspI	CCGG	1 cut(s)	570
MvnI	CGCG	3 cut(s)	51, 429, 639
MwoI	GCNNNNNNNGC	2 cut(s)	300, 426
NcoI	CCATGG	3 cut(s)	354, 375, 759
NdeII	GATC	5 cut(s)	349, 424, 487, 631, 932
NlaIII	CATG	6 cut(s)	277, 358, 379, 508, 677, 763
NlaIV	GGNNCC	4 cut(s)	78, 360, 633, 922
NmuCI	GTSAC	2 cut(s)	536, 850
NruI	TCGCGA	1 cut(s)	429
PaqCI	CACCTGC	1 cut(s)	299
PcsI	WCGNNNNNNNCGW	3 cut(s)	55, 304, 616
PfeI	GAWTC	2 cut(s)	184, 734
PflFI	GACNNNGTC	1 cut(s)	172
PkrI	GCNGC	2 cut(s)	136, 305
Ple19I	CGATCG	1 cut(s)	427
PleI	GAGTC	1 cut(s)	898
PpsI	GAGTC	1 cut(s)	898
PshAI	GACNNNNGTC	2 cut(s)	548, 971
Psp1406I	AACGTT	1 cut(s)	594
PspFI	CCCAGC	3 cut(s)	390, 641, 947
PspN4I	GGNNCC	4 cut(s)	78, 360, 633, 922
PspOMI	GGGCCC	1 cut(s)	920
PspPI	GGNCC	7 cut(s)	77, 208, 277, 478, 724, 920, 921
PsuI	RGATCY	2 cut(s)	487, 631
PsyI	GACNNNGTC	1 cut(s)	172
PvuI	CGATCG	1 cut(s)	427
PvuII	CAGCTG	1 cut(s)	390
RruI	TCGCGA	1 cut(s)	429
RsaI	GTAC	1 cut(s)	57
RsaNI	GTAC	1 cut(s)	56
RseI	CAYNNNNRTG	2 cut(s)	272, 374
SaqAI	TTAA	4 cut(s)	413, 518, 770, 963
SatI	GCNGC	2 cut(s)	135, 304
Sau3AI	GATC	5 cut(s)	349, 424, 487, 631, 932
Sau96I	GGNCC	7 cut(s)	77, 208, 277, 478, 724, 920, 921
SchI	GAGTC	1 cut(s)	899
SduI	GDGCHC	3 cut(s)	218, 363, 924
SfaNI	GCATC	2 cut(s)	50, 153
SfcI	CTRYAG	1 cut(s)	777
SinI	GGWCC	1 cut(s)	277
SmiMI	CAYNNNNRTG	2 cut(s)	272, 374
SmlI	CTYRAG	3 cut(s)	188, 482, 491
SmoI	CTYRAG	3 cut(s)	188, 482, 491
Sse9I	AATT	3 cut(s)	27, 621, 868
SsiI	CCGC	6 cut(s)	51, 68, 113, 134, 372, 546
StyI	CCWWGG	5 cut(s)	354, 375, 727, 759, 924
TaaI	ACNGT	5 cut(s)	196, 472, 604, 807, 838
TaiI	ACGT	2 cut(s)	173, 597
TaqI	TCGA	4 cut(s)	8, 399, 423, 931
TasI	AATT	3 cut(s)	27, 621, 868
TauI	GCSGC	1 cut(s)	137
TfiI	GAWTC	2 cut(s)	184, 734
Tru1I	TTAA	4 cut(s)	413, 518, 770, 963
Tru9I	TTAA	4 cut(s)	413, 518, 770, 963
TscAI	CASTG	5 cut(s)	218, 268, 457, 831, 922
TseFI	GTSAC	2 cut(s)	536, 850
TseI	GCWGC	1 cut(s)	303
Tsp45I	GTSAC	2 cut(s)	536, 850
TspRI	CASTG	5 cut(s)	218, 268, 457, 831, 922
Tth111I	GACNNNGTC	1 cut(s)	172
VpaK11BI	GGWCC	1 cut(s)	277
XagI	CCTNNNNNAGG	1 cut(s)	940
XcmI	CCANNNNNNNNNTGG	1 cut(s)	922

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.