Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011340

Physical Location & Seq

Genomic Coordinates Forward (+)

67017623 .. 67020847

Gene Structure 3225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41468

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGATGATTCAGCCATCCCAAATTTCGAGAGGTTCAATCCCGATTGTAAAACCAGCTATCCGGCGGGGAATACGATGTGAGGCCGCGGCGGTGGGGCCTTTCACTGGGAGAGACCCGAATGTGAAGAAGGCGGGATGGCTGAGGCAGAAAGCCCCACAGGGCATCAAGTATGAGGAGGTGAAGGAGACCTTGTCCCGTTTGAATCTCAAGACGGTGTGCGAGGAGGCCCAATGCCCTAACATCGGCGAGTGTTGGAATGGAGGTGGCGACGGCATTTCCACCGCCACCATCATGGTTCTCGGAGACACCTGCACTCGCGGCTGTCGCTTCTGTGCCGTCAAGACCAGCCGAACCCCTCCACCACCCGATCCCATGGAGCCCATCAACACTGCCATGGCCGTTGCCAGCTGGGGTGTCGATTATATTGTTCTAACCAGTGTCGATCGTGATGACCTGCCTGACGGTGGAAGTGGGCATTTTGCCCAGACCGTCAAGGCGCTCAAGGATCTCAAGCCTGACATCATGGTCGAGTGCTTAACTTCTGACTTTCGGGGTGACTTGACCGCTGTGCACACTCTGCTACACTCCGGCCTTGATGTCTTTGCACACAACATTGAGACTGTCAAACGCCTCCAGCGAATTGTCAGAGATCCTCGCGCTGGGTACGAGCAGAGCTTATCTGTTCTAAACCATGCAAAACAAAGCAAGAGGGGGATGATAACAAAAACTTCTATAATGTTGGGCCTTGGAGAATCAGACGATGAGTTGAAAGAAGCCATGGCTGATTTAAGGGCTATAGATGTGGATATACTGACACTTGGACAGTATTTACAGCCAACTCCACTACATTTGACTGTCAAAGAATATGTCACCCCTGAGAAATTCGATTTCTGGAAGGAATATGGGGAGTCTATTGGATTTCGTTATGTAGCCAGTGGGCCCTTGGTTCGATCATCGTATAGGGCAGGGGAGCTATTCGTTAAGACAATGGTCAGGGAAAGTGCTGGAGGTATTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006464 GO:0006629 GO:0006631 GO:0006633 GO:0006732 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009106 GO:0009107 GO:0009108 GO:0009249 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016053 GO:0016740 GO:0016782 GO:0016783 GO:0016992 GO:0018065 GO:0018130 GO:0018193 GO:0018205 GO:0019538 GO:0019752 GO:0032787 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0051186 GO:0051188 GO:0051604 GO:0070283 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00785 ko01100 map00785 map01100

Pfam Domains

Protein Families

LIAS_N Radical_SAM rRNA_methylase

Protein Analysis

339

Amino Acids

37.23

Weight (kDa)

7.58

Isoelectric Point (pI)

35.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIAS_N	PF16881	45 - 78	3.7e-08	N-terminal domain of lipoyl synthase of Radical_SAM family
Radical_SAM	PF04055	99 - 262	2.3e-23	Radical SAM superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011340)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08415
fragaria_vesca	FvH4_4g37350
malus_domestica	MD12G1087800.v1.1 MD13G1000600.v1.1 MD16G1005000.v1.1
prunus_persica	Prupe.1G352000_v2.0.a1 Prupe.1G352000_v2.0.a1 Prupe.1G352000_v2.0.a1 Prupe.1G352000_v2.0.a1
pyrus_communis	pycom12g07510 pycom13g00060
rosa_chinensis	RchiOBHm_Chr4g0447211
rosa_laevigata	RLG00000005596
rosa_multiflora	Rmu_ssc0000396.1_g000001
rosa_rugosa	Rorug04G0379000
rosa_samantha	Rh4AG440300 Rh4BG449300 Rh4CG466300 Rh4DG447800
rosa_wichuraiana	Rw4G037670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	317
AasI	GACNNNNNNGTC	1 cut(s)	524
Acc36I	ACCTGC	2 cut(s)	317, 462
AccII	CGCG	3 cut(s)	86, 318, 657
AciI	CCGC	8 cut(s)	64, 84, 86, 89, 131, 282, 318, 564
AclWI	GGATC	3 cut(s)	362, 513, 644
AcoI	YGGCCR	1 cut(s)	396
AcsI	RAATTY	2 cut(s)	21, 881
AfaI	GTAC	1 cut(s)	665
AfiI	CCNNNNNNNGG	4 cut(s)	104, 242, 464, 659
AgsI	TTSAA	3 cut(s)	36, 202, 769
AluBI	AGCT	4 cut(s)	56, 408, 675, 973
AluI	AGCT	4 cut(s)	56, 408, 675, 973
Alw21I	GWGCWC	1 cut(s)	573
Alw26I	GTCTC	4 cut(s)	105, 179, 297, 611
Alw44I	GTGCAC	1 cut(s)	569
AlwI	GGATC	3 cut(s)	362, 513, 644
AoxI	GGCC	7 cut(s)	81, 95, 225, 396, 589, 742, 938
ApaI	GGGCCC	1 cut(s)	942
ApaLI	GTGCAC	1 cut(s)	569
ApoI	RAATTY	2 cut(s)	21, 881
ArsI	GACNNNNNNTTYG	2 cut(s)	852, 884
AspLEI	GCGC	2 cut(s)	499, 659
AspS9I	GGNCC	5 cut(s)	95, 226, 742, 938, 939
AsuHPI	GGTGA	3 cut(s)	190, 566, 862
BaeGI	GKGCMC	2 cut(s)	573, 942
BanII	GRGCYC	2 cut(s)	381, 942
Bbv12I	GWGCWC	1 cut(s)	573
BbvCI	CCTCAGC	1 cut(s)	140
BccI	CCATC	4 cut(s)	22, 129, 296, 389
BceAI	ACGGC	3 cut(s)	286, 320, 383
BcoDI	GTCTC	4 cut(s)	105, 179, 297, 611
BfmI	CTRYAG	1 cut(s)	795
BfoI	RGCGCY	1 cut(s)	500
BfuAI	ACCTGC	2 cut(s)	317, 462
BisI	GCNGC	3 cut(s)	84, 87, 319
BlsI	GCNGC	3 cut(s)	85, 88, 320
BmgT120I	GGNCC	5 cut(s)	95, 226, 742, 938, 939
BmiI	GGNNCC	3 cut(s)	96, 378, 940
BmrI	ACTGGG	1 cut(s)	114
BmsI	GCATC	1 cut(s)	171
BmuI	ACTGGG	1 cut(s)	114
BoxI	GACNNNNGTC	1 cut(s)	989
BpmI	CTGGAG	1 cut(s)	617
Bpu10I	CCTNAGC	1 cut(s)	140
BpuEI	CTTGAG	3 cut(s)	191, 485, 494
BsaI	GGTCTC	2 cut(s)	105, 179
BsaJI	CCNNGG	6 cut(s)	84, 372, 393, 745, 777, 942
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bsc4I	CCNNNNNNNGG	4 cut(s)	104, 242, 464, 659
Bse1I	ACTGG	3 cut(s)	109, 435, 933
BseDI	CCNNGG	6 cut(s)	84, 372, 393, 745, 777, 942
BseGI	GGATG	3 cut(s)	14, 140, 720
BseLI	CCNNNNNNNGG	4 cut(s)	104, 242, 464, 659
BseMII	CTCAG	2 cut(s)	131, 867
BseNI	ACTGG	3 cut(s)	109, 435, 933
BseRI	GAGGAG	2 cut(s)	188, 236
BseSI	GKGCMC	2 cut(s)	573, 942
BseYI	CCCAGC	2 cut(s)	408, 659
BsgI	GTGCAG	1 cut(s)	295
Bsh1236I	CGCG	3 cut(s)	86, 318, 657
Bsh1285I	CGRYCG	1 cut(s)	445
BshFI	GGCC	7 cut(s)	83, 97, 227, 398, 591, 744, 940
BsiEI	CGRYCG	1 cut(s)	445
BsiHKAI	GWGCWC	1 cut(s)	573
BsiSI	CCGG	2 cut(s)	61, 588
BslFI	GGGAC	1 cut(s)	178
BslI	CCNNNNNNNGG	4 cut(s)	104, 242, 464, 659
BsmAI	GTCTC	4 cut(s)	105, 179, 297, 611
BsmFI	GGGAC	1 cut(s)	178
BsnI	GGCC	7 cut(s)	83, 97, 227, 398, 591, 744, 940
Bso31I	GGTCTC	2 cut(s)	105, 179
Bsp120I	GGGCCC	1 cut(s)	938
Bsp1286I	GDGCHC	3 cut(s)	381, 573, 942
Bsp143I	GATC	5 cut(s)	367, 442, 505, 649, 950
Bsp19I	CCATGG	3 cut(s)	372, 393, 777
BspACI	CCGC	8 cut(s)	64, 84, 86, 89, 131, 282, 318, 564
BspANI	GGCC	7 cut(s)	83, 97, 227, 398, 591, 744, 940
BspCNI	CTCAG	2 cut(s)	132, 868
BspFNI	CGCG	3 cut(s)	86, 318, 657
BspLI	GGNNCC	3 cut(s)	96, 378, 940
BspMI	ACCTGC	2 cut(s)	317, 462
BspPI	GGATC	3 cut(s)	362, 513, 644
BspTNI	GGTCTC	2 cut(s)	105, 179
BsrI	ACTGG	3 cut(s)	109, 435, 933
BssECI	CCNNGG	6 cut(s)	84, 372, 393, 745, 777, 942
BssMI	GATC	5 cut(s)	367, 442, 505, 649, 950
BssT1I	CCWWGG	5 cut(s)	372, 393, 745, 777, 942
Bst4CI	ACNGT	6 cut(s)	214, 464, 490, 622, 825, 856
BstAPI	GCANNNNNTGC	1 cut(s)	577
BstC8I	GCNNGC	1 cut(s)	406
BstDEI	CTNAG	2 cut(s)	140, 876
BstDSI	CCRYGG	4 cut(s)	84, 372, 393, 777
BstF5I	GGATG	3 cut(s)	14, 140, 720
BstFNI	CGCG	3 cut(s)	86, 318, 657
BstH2I	RGCGCY	1 cut(s)	500
BstHHI	GCGC	2 cut(s)	499, 659
BstKTI	GATC	5 cut(s)	370, 445, 508, 652, 953
BstMAI	GTCTC	4 cut(s)	105, 179, 297, 611
BstMBI	GATC	5 cut(s)	367, 442, 505, 649, 950
BstMCI	CGRYCG	1 cut(s)	445
BstMWI	GCNNNNNNNGC	3 cut(s)	318, 324, 577
BstPAI	GACNNNNGTC	1 cut(s)	989
BstSFI	CTRYAG	1 cut(s)	795
BstSLI	GKGCMC	2 cut(s)	573, 942
BstUI	CGCG	3 cut(s)	86, 318, 657
BstX2I	RGATCY	2 cut(s)	505, 649
BstXI	CCANNNNNNTGG	1 cut(s)	292
BstYI	RGATCY	2 cut(s)	505, 649
BsuRI	GGCC	7 cut(s)	83, 97, 227, 398, 591, 744, 940
BtgI	CCRYGG	4 cut(s)	84, 372, 393, 777
BtsCI	GGATG	3 cut(s)	14, 140, 720
BtsI	GCAGTG	1 cut(s)	387
BtsIMutI	CAGTG	4 cut(s)	102, 387, 442, 940
BveI	ACCTGC	2 cut(s)	317, 462
Cac8I	GCNNGC	1 cut(s)	406
CfoI	GCGC	2 cut(s)	499, 659
Cfr13I	GGNCC	5 cut(s)	95, 226, 742, 938, 939
Cfr42I	CCGCGG	1 cut(s)	87
Csp6I	GTAC	1 cut(s)	664
CspCI	CAANNNNNGTGG	2 cut(s)	831, 866
CviAII	CATG	6 cut(s)	292, 373, 394, 523, 692, 778
CviQI	GTAC	1 cut(s)	664
DdeI	CTNAG	2 cut(s)	140, 876
DpnI	GATC	5 cut(s)	369, 444, 507, 651, 952
DpnII	GATC	5 cut(s)	367, 442, 505, 649, 950
DrdI	GACNNNNNNGTC	1 cut(s)	524
DseDI	GACNNNNNNGTC	1 cut(s)	524
EaeI	YGGCCR	1 cut(s)	396
Eco130I	CCWWGG	5 cut(s)	372, 393, 745, 777, 942
Eco24I	GRGCYC	2 cut(s)	381, 942
Eco31I	GGTCTC	2 cut(s)	105, 179
EcoO109I	RGGNCCY	2 cut(s)	95, 939
EcoT14I	CCWWGG	5 cut(s)	372, 393, 745, 777, 942
EcoT38I	GRGCYC	2 cut(s)	381, 942
ErhI	CCWWGG	5 cut(s)	372, 393, 745, 777, 942
FaeI	CATG	6 cut(s)	295, 376, 397, 526, 695, 781
FalI	AAGNNNNNCTT	2 cut(s)	173, 205
FaqI	GGGAC	1 cut(s)	178
FatI	CATG	6 cut(s)	291, 372, 393, 522, 691, 777
FauI	CCCGC	2 cut(s)	57, 124
Fnu4HI	GCNGC	3 cut(s)	84, 87, 319
FokI	GGATG	2 cut(s)	147, 727
FriOI	GRGCYC	2 cut(s)	381, 942
Fsp4HI	GCNGC	3 cut(s)	84, 87, 319
GlaI	GCGC	2 cut(s)	498, 658
GluI	GCNGC	3 cut(s)	84, 87, 319
GsaI	CCCAGC	2 cut(s)	412, 663
GsuI	CTGGAG	1 cut(s)	617
HaeII	RGCGCY	1 cut(s)	500
HaeIII	GGCC	7 cut(s)	83, 97, 227, 398, 591, 744, 940
HapII	CCGG	2 cut(s)	61, 588
HhaI	GCGC	2 cut(s)	499, 659
Hin1II	CATG	6 cut(s)	295, 376, 397, 526, 695, 781
Hin6I	GCGC	2 cut(s)	497, 657
HinP1I	GCGC	2 cut(s)	497, 657
HinfI	GANTC	4 cut(s)	7, 202, 752, 908
HpaII	CCGG	2 cut(s)	61, 588
HphI	GGTGA	3 cut(s)	190, 566, 862
Hpy166II	GTNNAC	1 cut(s)	571
Hpy188I	TCNGA	4 cut(s)	302, 544, 647, 757
Hpy188III	TCNNGA	6 cut(s)	27, 40, 208, 340, 446, 892
Hpy8I	GTNNAC	1 cut(s)	571
Hpy99I	CGWCG	1 cut(s)	272
HpyAV	CCTTC	3 cut(s)	121, 175, 889
HpyCH4III	ACNGT	6 cut(s)	214, 464, 490, 622, 825, 856
HpyCH4V	TGCA	4 cut(s)	312, 571, 605, 695
HpyF10VI	GCNNNNNNNGC	3 cut(s)	318, 324, 577
HpyF3I	CTNAG	2 cut(s)	140, 876
Hsp92II	CATG	6 cut(s)	295, 376, 397, 526, 695, 781
HspAI	GCGC	2 cut(s)	497, 657
KspI	CCGCGG	1 cut(s)	87
Kzo9I	GATC	5 cut(s)	367, 442, 505, 649, 950
LmnI	GCTCC	2 cut(s)	376, 970
LweI	GCATC	1 cut(s)	171
MaeIII	GTNAC	2 cut(s)	554, 868
MalI	GATC	5 cut(s)	369, 444, 507, 651, 952
MboI	GATC	5 cut(s)	367, 442, 505, 649, 950
MboII	GAAGA	1 cut(s)	136
MflI	RGATCY	2 cut(s)	505, 649
MhlI	GDGCHC	3 cut(s)	381, 573, 942
MluCI	AATT	3 cut(s)	21, 639, 881
MlyI	GAGTC	1 cut(s)	917
MmeI	TCCRAC	1 cut(s)	233
MseI	TTAA	4 cut(s)	536, 788, 981, 1018
MslI	CAYNNNNRTG	2 cut(s)	290, 392
MspA1I	CMGCKG	3 cut(s)	86, 408, 566
MspI	CCGG	2 cut(s)	61, 588
MvnI	CGCG	3 cut(s)	86, 318, 657
MwoI	GCNNNNNNNGC	3 cut(s)	318, 324, 577
NcoI	CCATGG	3 cut(s)	372, 393, 777
NdeII	GATC	5 cut(s)	367, 442, 505, 649, 950
NlaIII	CATG	6 cut(s)	295, 376, 397, 526, 695, 781
NlaIV	GGNNCC	3 cut(s)	96, 378, 940
NmuCI	GTSAC	2 cut(s)	554, 868
PaqCI	CACCTGC	1 cut(s)	317
PcsI	WCGNNNNNNNCGW	1 cut(s)	634
PfeI	GAWTC	3 cut(s)	7, 202, 752
PflFI	GACNNNGTC	1 cut(s)	190
PkrI	GCNGC	3 cut(s)	85, 88, 320
Ple19I	CGATCG	1 cut(s)	445
PleI	GAGTC	1 cut(s)	916
PpsI	GAGTC	1 cut(s)	916
PshAI	GACNNNNGTC	1 cut(s)	989
PspFI	CCCAGC	2 cut(s)	408, 659
PspN4I	GGNNCC	3 cut(s)	96, 378, 940
PspOMI	GGGCCC	1 cut(s)	938
PspPI	GGNCC	5 cut(s)	95, 226, 742, 938, 939
PsuI	RGATCY	2 cut(s)	505, 649
PsyI	GACNNNGTC	1 cut(s)	190
PvuI	CGATCG	1 cut(s)	445
PvuII	CAGCTG	1 cut(s)	408
RsaI	GTAC	1 cut(s)	665
RsaNI	GTAC	1 cut(s)	664
RseI	CAYNNNNRTG	2 cut(s)	290, 392
SacII	CCGCGG	1 cut(s)	87
SaqAI	TTAA	4 cut(s)	536, 788, 981, 1018
SatI	GCNGC	3 cut(s)	84, 87, 319
Sau3AI	GATC	5 cut(s)	367, 442, 505, 649, 950
Sau96I	GGNCC	5 cut(s)	95, 226, 742, 938, 939
SchI	GAGTC	1 cut(s)	917
SduI	GDGCHC	3 cut(s)	381, 573, 942
SfaNI	GCATC	1 cut(s)	171
SfcI	CTRYAG	1 cut(s)	795
Sfr303I	CCGCGG	1 cut(s)	87
SgrBI	CCGCGG	1 cut(s)	87
SmiMI	CAYNNNNRTG	2 cut(s)	290, 392
SmlI	CTYRAG	3 cut(s)	206, 500, 509
SmoI	CTYRAG	3 cut(s)	206, 500, 509
Sse9I	AATT	3 cut(s)	21, 639, 881
SsiI	CCGC	8 cut(s)	64, 84, 86, 89, 131, 282, 318, 564
StyI	CCWWGG	5 cut(s)	372, 393, 745, 777, 942
TaaI	ACNGT	6 cut(s)	214, 464, 490, 622, 825, 856
TaqI	TCGA	6 cut(s)	26, 417, 441, 528, 885, 949
TasI	AATT	3 cut(s)	21, 639, 881
TauI	GCSGC	3 cut(s)	86, 89, 321
TfiI	GAWTC	3 cut(s)	7, 202, 752
Tru1I	TTAA	4 cut(s)	536, 788, 981, 1018
Tru9I	TTAA	4 cut(s)	536, 788, 981, 1018
TscAI	CASTG	4 cut(s)	109, 394, 442, 940
TseFI	GTSAC	2 cut(s)	554, 868
Tsp45I	GTSAC	2 cut(s)	554, 868
TspDTI	ATGAA	1 cut(s)	1004
TspRI	CASTG	4 cut(s)	109, 394, 442, 940
Tth111I	GACNNNGTC	1 cut(s)	190
VneI	GTGCAC	1 cut(s)	569
XapI	RAATTY	2 cut(s)	21, 881
XcmI	CCANNNNNNNNNTGG	1 cut(s)	940

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.