Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002800

Physical Location & Seq

Genomic Coordinates Reverse (-)

54965943 .. 54971126

Gene Structure 5184 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0379000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1941 bp

ATGAAACTCGAGAGGGAACCGGTGTTTGGCCAATTAAGTTTAAGCCACAAGCCTGATTATAAACCTTTTGATCACAATGAGATTACTCTGAATTCTGGGGGATTACAATCAGCAAATTGGATTGGGAAGGAAAGTCAGACCAGGGTTTTGTTTGATTCGAAGGACAATGAGGAAGATGCTGTTCAAAATGATGGAATTGACTTGACTGCATCAAGATTTGATTGTTCAAAGAGTGTGGATGATTTGGAAACCTGTAATGAAGGTGAAGTTAAAGGTTTTGCGCCTGAAAAATTAGAATCTTCAGGGAAGCAATCAGAATATTATATGGACAAAAGTGTTACAGAATGCGACTTGCCAGAACTGACGGTTTGTTACAAAGAGAGTAGTTGCAATAATATCAAGGATATCTGCATAGATGAGGGAGTGCCTTCCCAAGAGAAGATCCGGTTTGAGACAGACGTGGATGAGAAGGCATTTTGCACTTATTTGTCTCCTGATAAGGATCAGAAACACCTACTGCTTGAACAACAAATGGACATTTTTATGACCATTCCAGATGATTTCAAGTCTTCTGCACAGAAATATGATGTAAAGAAGGATTTTGTCATTGCTTGTGATGCCAAGGATCTGGTGCAGAGAGAAGAAGCAATGTATGATGCATCAGAGAAAACTGCAATTGATGTGTCCAGAGACATGATTTCCCCTGAAAACTTGCGAACACAGAATTTGAACTCCAAGTCCTCTAGTAAGGCCAGCAATGAAGCTGTACAAGATACTGTTCAGATATCGAGTGACAAGGAAAGTGAAATAGCAGCAACTCACAGCAGTGCTTTGGTTTCAGCAAAGGAAGAATCTAAGGATATTGAGAATGGAGCGTTCTTGAAGCGAGATCCTGTTCCTTCAGCTGTAGAACTAAACTGCCATGTTGATAAGTTATCTGACATTAGTGAAGTGGAGAATGGAAGCATTACTGTTTGTTTGGACCGTTCAGCACCTGTATCGATTATTAGATTTCCAAACCTGGATCCTGTCCCTTCCACTGATGGATCAAACTGTCTTCTTGACGAGTTGTCCAACAATTTTAAAGCGGACAAAGGAGGAAGCAGTTCTTGTGGTTTGAACTGTTCAGACATTCTCGGGGATGTCTGTCCCCAAAATGGGTTCAGCAAACATATTGAAACTCAAAATATGTCTGAAGATGATAGTGATGACATATGTGATTCAAAAACTATTTCAAGCAAAGTTCAGCCTTGTTTAGCACCTGTGACTATTGCCAGAGGGGATTGTCCTGAAAATGGTGCCTGTCAACGTCCTGAAACTTCAAATACGTCCATGGTTGATGAAGACATTTCTGATTCAGAGATTGTTTCAAGCCAAGTTCAACATTCTTTAGTCCCTGCGACTATTGCCAGAGACCAATATCTTAAAGAGGGGAATTCTAATGCACAGGATGTTCCGATCCAAGTTCAACATGAGGTGGGAGAGACTAGTTTCTCCGCAGGAGTTCCTTTCTCGACCCTTATAAATTATAAGGAACCAATACCTTATTCAGGTACACACAATGCTTCGAGTGAAGTGCAACATGATCAGGGGGAATCAAGTTTCTCTGCAGTACGTAACTCATTGAGTCTTATAAATAGTTCGGTACCAATACCTTATTCTGATTCAGATGGATTCCTTCTTCAACGTGATCTGGGAGATTCGAGTTTTGCTGCAGTAGGTCATGTCTCGAGTCTCATAAATAGTTCGGGACCAATACCTTATTCTGGCAGTATCTCCCTTCGATCAGACAGCAGCGCAACCAGCACCCGCTCATTTGCCTTCCCTGTTATGCATCCGCATGAACCATTCAGCAGTCCGGTGAGAATGGCAAAAGCTGACCGGAAGCTTTTGCGTAAACATAAGGGTTGGAAGCGGGGTATTTTCTGCTGTAGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006464 GO:0006629 GO:0006631 GO:0006633 GO:0006732 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009106 GO:0009107 GO:0009108 GO:0009249 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016053 GO:0016740 GO:0016782 GO:0016783 GO:0016992 GO:0018065 GO:0018130 GO:0018193 GO:0018205 GO:0019538 GO:0019752 GO:0032787 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0051186 GO:0051188 GO:0051604 GO:0070283 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00785 ko01100 map00785 map01100

Pfam Domains

Protein Families

LIAS_N Radical_SAM rRNA_methylase

Protein Analysis

646

Amino Acids

70.72

Weight (kDa)

4.64

Isoelectric Point (pI)

53.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08540
fragaria_vesca	FvH4_4g37340
malus_domestica	MD13G1000800.v1.1 MD16G1004900.v1.1
prunus_persica	Prupe.1G351900_v2.0.a1
pyrus_communis	pycom13g00070
rosa_chinensis	RchiOBHm_Chr1g0316621 RchiOBHm_Chr3g0483721 RchiOBHm_Chr3g0483731 RchiOBHm_Chr4g0403031 RchiOBHm_Chr4g0447201 RchiOBHm_Chr6g0263291
rosa_laevigata	RLG00000005597
rosa_multiflora	Rmu_co8235609.1_g000001 Rmu_sc0000101.1_g000002 Rmu_sc0000310.1_g000018 Rmu_sc0001241.1_g000043 Rmu_ssc0000359.1_g000022
rosa_roxburghii	Rroxscaffold_5G00387570
rosa_rugosa	Rorug04G0379000
rosa_samantha	Rh1AG022300 Rh2BG461100 Rh2CG299400 Rh3AG256400 Rh4AG023400 Rh4AG023500 Rh4AG440200 Rh4BG449200 Rh4CG466200 Rh4DG447700 Rh5CG543000 Rh6AG123500 Rh6BG118500 Rh6CG116600 Rh6DG105200
rosa_wichuraiana	Rw1G002360 Rw4G001660 Rw4G037660 Rw6G025410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	60, 1523, 1530, 1634
Acc65I	GGTACC	1 cut(s)	1645
AccB1I	GGYRCC	2 cut(s)	1298, 1645
AccBSI	CCGCTC	1 cut(s)	1812
AciI	CCGC	5 cut(s)	1088, 1497, 1810, 1838, 1915
AclWI	GGATC	8 cut(s)	436, 510, 633, 884, 1019, 1032, 1054, 1453
AcoI	YGGCCR	1 cut(s)	28
AcsI	RAATTY	3 cut(s)	91, 724, 1435
AcuI	CTGAAG	3 cut(s)	285, 885, 1215
AfaI	GTAC	4 cut(s)	768, 1555, 1614, 1647
AfiI	CCNNNNNNNGG	6 cut(s)	26, 1157, 1158, 1295, 1550, 1766
AgeI	ACCGGT	1 cut(s)	19
AhdI	GACNNNNNGTC	1 cut(s)	1069
AhlI	ACTAGT	1 cut(s)	1487
AjiI	CACGTC	1 cut(s)	460
AjnI	CCWGG	2 cut(s)	140, 1020
AjuI	GAANNNNNNNTTGG	8 cut(s)	9, 41, 1531, 1563, 1642, 1674, 1747, 1779
AleI	CACNNNNGTG	1 cut(s)	825
AloI	GAACNNNNNNTCC	2 cut(s)	722, 754
AluBI	AGCT	4 cut(s)	764, 905, 1877, 1888
AluI	AGCT	4 cut(s)	764, 905, 1877, 1888
Alw26I	GTCTC	7 cut(s)	446, 495, 684, 1407, 1478, 1732, 1739
AlwI	GGATC	8 cut(s)	436, 510, 633, 884, 1019, 1032, 1054, 1453
AlwNI	CAGNNNCTG	1 cut(s)	995
Ama87I	CYCGRG	3 cut(s)	8, 1136, 1729
AoxI	GGCC	2 cut(s)	28, 750
ApeKI	GCWGC	3 cut(s)	812, 1712, 1794
ApoI	RAATTY	3 cut(s)	91, 724, 1435
ArsI	GACNNNNNNTTYG	2 cut(s)	130, 162
AsiGI	ACCGGT	1 cut(s)	19
Asp700I	GAANNNNTTC	1 cut(s)	1105
Asp718I	GGTACC	1 cut(s)	1645
AspLEI	GCGC	2 cut(s)	283, 1799
AspS9I	GGNCC	2 cut(s)	982, 1751
AsuHPI	GGTGA	2 cut(s)	275, 1873
AsuII	TTCGAA	1 cut(s)	158
AvaI	CYCGRG	3 cut(s)	8, 1136, 1729
AvaII	GGWCC	2 cut(s)	982, 1751
BalI	TGGCCA	1 cut(s)	30
BamHI	GGATCC	1 cut(s)	1024
BanI	GGYRCC	2 cut(s)	1298, 1645
BbsI	GAAGAC	3 cut(s)	561, 1049, 1350
BbvI	GCAGC	3 cut(s)	824, 1699, 1806
BccI	CCATC	3 cut(s)	185, 1037, 1664
BcgI	CGANNNNNNTGC	4 cut(s)	981, 1015, 1558, 1592
BciT130I	CCWGG	2 cut(s)	142, 1022
BclI	TGATCA	2 cut(s)	70, 1585
BcoDI	GTCTC	7 cut(s)	446, 495, 684, 1407, 1478, 1732, 1739
BcuI	ACTAGT	1 cut(s)	1487
BfaI	CTAG	2 cut(s)	744, 1488
BfmI	CTRYAG	4 cut(s)	906, 1608, 1713, 1930
BisI	GCNGC	3 cut(s)	813, 1713, 1795
BlsI	GCNGC	3 cut(s)	814, 1714, 1796
Bme1390I	CCNGG	2 cut(s)	142, 1022
Bme18I	GGWCC	2 cut(s)	982, 1751
BmeRI	GACNNNNNGTC	1 cut(s)	1069
BmeT110I	CYCGRG	3 cut(s)	8, 1136, 1729
BmgBI	CACGTC	1 cut(s)	460
BmgT120I	GGNCC	2 cut(s)	982, 1751
BmiI	GGNNCC	6 cut(s)	18, 1026, 1300, 1536, 1647, 1752
BmrFI	CCNGG	2 cut(s)	142, 1022
BmsI	GCATC	6 cut(s)	166, 218, 607, 646, 668, 1843
BpiI	GAAGAC	3 cut(s)	561, 1049, 1350
Bpu14I	TTCGAA	1 cut(s)	158
Bsa29I	ATCGAT	1 cut(s)	1001
BsaAI	YACGTR	1 cut(s)	1616
BsaBI	GATNNNNATC	2 cut(s)	106, 501
BsaI	GGTCTC	1 cut(s)	1407
BsaJI	CCNNGG	3 cut(s)	141, 621, 1332
BsaWI	WCCGGW	4 cut(s)	19, 444, 1858, 1881
Bsc4I	CCNNNNNNNGG	6 cut(s)	26, 1157, 1158, 1295, 1550, 1766
Bse118I	RCCGGY	1 cut(s)	19
Bse3DI	GCAATG	3 cut(s)	606, 654, 763
Bse8I	GATNNNNATC	2 cut(s)	106, 501
BseBI	CCWGG	2 cut(s)	142, 1022
BseCI	ATCGAT	1 cut(s)	1001
BseDI	CCNNGG	3 cut(s)	141, 621, 1332
BseGI	GGATG	5 cut(s)	244, 469, 1147, 1456, 1834
BseJI	GATNNNNATC	2 cut(s)	106, 501
BseLI	CCNNNNNNNGG	6 cut(s)	26, 1157, 1158, 1295, 1550, 1766
BseMI	GCAATG	3 cut(s)	606, 654, 763
BseXI	GCAGC	3 cut(s)	824, 1699, 1806
BsgI	GTGCAG	2 cut(s)	558, 653
BshFI	GGCC	2 cut(s)	30, 752
BshNI	GGYRCC	2 cut(s)	1298, 1645
BshTI	ACCGGT	1 cut(s)	19
BshVI	ATCGAT	1 cut(s)	1001
BsiHKCI	CYCGRG	3 cut(s)	8, 1136, 1729
BsiSI	CCGG	4 cut(s)	20, 445, 1859, 1882
BslFI	GGGAC	4 cut(s)	1016, 1134, 1379, 1764
BslI	CCNNNNNNNGG	6 cut(s)	26, 1157, 1158, 1295, 1550, 1766
BsmAI	GTCTC	7 cut(s)	446, 495, 684, 1407, 1478, 1732, 1739
BsmFI	GGGAC	4 cut(s)	1016, 1134, 1379, 1764
BsmI	GAATGC	1 cut(s)	350
BsnI	GGCC	2 cut(s)	30, 752
Bso31I	GGTCTC	1 cut(s)	1407
BsoBI	CYCGRG	3 cut(s)	8, 1136, 1729
Bsp119I	TTCGAA	1 cut(s)	158
Bsp1407I	TGTACA	1 cut(s)	766
Bsp19I	CCATGG	1 cut(s)	1332
BspACI	CCGC	5 cut(s)	1088, 1497, 1810, 1838, 1915
BspANI	GGCC	2 cut(s)	30, 752
BspDI	ATCGAT	1 cut(s)	1001
BspLI	GGNNCC	6 cut(s)	18, 1026, 1300, 1536, 1647, 1752
BspMAI	CTGCAG	2 cut(s)	1612, 1717
BspPI	GGATC	8 cut(s)	436, 510, 633, 884, 1019, 1032, 1054, 1453
BspT104I	TTCGAA	1 cut(s)	158
BspT107I	GGYRCC	2 cut(s)	1298, 1645
BspTNI	GGTCTC	1 cut(s)	1407
BsrBI	CCGCTC	1 cut(s)	1812
BsrDI	GCAATG	3 cut(s)	606, 654, 763
BsrFI	RCCGGY	1 cut(s)	19
BsrGI	TGTACA	1 cut(s)	766
BssAI	RCCGGY	1 cut(s)	19
BssECI	CCNNGG	3 cut(s)	141, 621, 1332
BssT1I	CCWWGG	2 cut(s)	621, 1332
Bst2UI	CCWGG	2 cut(s)	142, 1022
Bst4CI	ACNGT	6 cut(s)	367, 778, 973, 986, 1055, 1124
BstAUI	TGTACA	1 cut(s)	766
BstBAI	YACGTR	1 cut(s)	1616
BstBI	TTCGAA	1 cut(s)	158
BstC8I	GCNNGC	1 cut(s)	754
BstDEI	CTNAG	1 cut(s)	855
BstDSI	CCRYGG	1 cut(s)	1332
BstENI	CCTNNNNNAGG	1 cut(s)	1548
BstF5I	GGATG	5 cut(s)	244, 469, 1147, 1456, 1834
BstHHI	GCGC	2 cut(s)	283, 1799
BstMAI	GTCTC	7 cut(s)	446, 495, 684, 1407, 1478, 1732, 1739
BstMWI	GCNNNNNNNGC	3 cut(s)	617, 1406, 1803
BstNI	CCWGG	2 cut(s)	142, 1022
BstSCI	CCNGG	2 cut(s)	140, 1020
BstSFI	CTRYAG	4 cut(s)	906, 1608, 1713, 1930
BstSNI	TACGTA	1 cut(s)	1616
BstV1I	GCAGC	3 cut(s)	824, 1699, 1806
BstV2I	GAAGAC	3 cut(s)	561, 1049, 1350
BstX2I	RGATCY	4 cut(s)	441, 625, 889, 1024
BstXI	CCANNNNNNTGG	1 cut(s)	628
BstYI	RGATCY	4 cut(s)	441, 625, 889, 1024
Bsu15I	ATCGAT	1 cut(s)	1001
BsuRI	GGCC	2 cut(s)	30, 752
BsuTUI	ATCGAT	1 cut(s)	1001
BtgI	CCRYGG	1 cut(s)	1332
BtrI	CACGTC	1 cut(s)	460
BtsCI	GGATG	5 cut(s)	244, 469, 1147, 1456, 1834
BtsI	GCAGTG	1 cut(s)	832
BtsIMutI	CAGTG	2 cut(s)	832, 1038
Cac8I	GCNNGC	1 cut(s)	754
CaiI	CAGNNNCTG	1 cut(s)	995
CfoI	GCGC	2 cut(s)	283, 1799
Cfr10I	RCCGGY	1 cut(s)	19
Cfr13I	GGNCC	2 cut(s)	982, 1751
ClaI	ATCGAT	1 cut(s)	1001
Csp6I	GTAC	4 cut(s)	767, 1554, 1613, 1646
CspAI	ACCGGT	1 cut(s)	19
CspCI	CAANNNNNGTGG	2 cut(s)	216, 251
CviAII	CATG	7 cut(s)	694, 923, 1333, 1472, 1583, 1724, 1841
CviQI	GTAC	4 cut(s)	767, 1554, 1613, 1646
DdeI	CTNAG	1 cut(s)	855
DraI	TTTAAA	1 cut(s)	1084
DriI	GACNNNNNGTC	1 cut(s)	1069
EaeI	YGGCCR	1 cut(s)	28
Eam1105I	GACNNNNNGTC	1 cut(s)	1069
Eco105I	TACGTA	1 cut(s)	1616
Eco130I	CCWWGG	2 cut(s)	621, 1332
Eco31I	GGTCTC	1 cut(s)	1407
Eco32I	GATATC	2 cut(s)	406, 786
Eco47I	GGWCC	2 cut(s)	982, 1751
Eco57I	CTGAAG	3 cut(s)	285, 885, 1215
Eco88I	CYCGRG	3 cut(s)	8, 1136, 1729
EcoNI	CCTNNNNNAGG	1 cut(s)	1548
EcoRI	GAATTC	2 cut(s)	91, 1435
EcoRII	CCWGG	2 cut(s)	140, 1020
EcoRV	GATATC	2 cut(s)	406, 786
EcoT14I	CCWWGG	2 cut(s)	621, 1332
EcoT22I	ATGCAT	2 cut(s)	661, 1836
ErhI	CCWWGG	2 cut(s)	621, 1332
FaeI	CATG	7 cut(s)	697, 926, 1336, 1475, 1586, 1727, 1844
FalI	AAGNNNNNCTT	2 cut(s)	1093, 1125
FaqI	GGGAC	4 cut(s)	1016, 1134, 1379, 1764
FatI	CATG	7 cut(s)	693, 922, 1332, 1471, 1582, 1723, 1840
FauI	CCCGC	2 cut(s)	1817, 1908
FauNDI	CATATG	1 cut(s)	1214
FbaI	TGATCA	2 cut(s)	70, 1585
Fnu4HI	GCNGC	3 cut(s)	813, 1713, 1795
FokI	GGATG	5 cut(s)	251, 476, 1154, 1463, 1821
Fsp4HI	GCNGC	3 cut(s)	813, 1713, 1795
FspBI	CTAG	2 cut(s)	744, 1488
GlaI	GCGC	2 cut(s)	282, 1798
GluI	GCNGC	3 cut(s)	813, 1713, 1795
HaeIII	GGCC	2 cut(s)	30, 752
HapII	CCGG	4 cut(s)	20, 445, 1859, 1882
HhaI	GCGC	2 cut(s)	283, 1799
Hin1II	CATG	7 cut(s)	697, 926, 1336, 1475, 1586, 1727, 1844
Hin6I	GCGC	2 cut(s)	281, 1797
HinP1I	GCGC	2 cut(s)	281, 1797
HincII	GTYRAC	1 cut(s)	1307
HindII	GTYRAC	1 cut(s)	1307
HindIII	AAGCTT	1 cut(s)	1886
HpaII	CCGG	4 cut(s)	20, 445, 1859, 1882
HphI	GGTGA	2 cut(s)	275, 1873
Hpy166II	GTNNAC	3 cut(s)	1307, 1556, 1898
Hpy8I	GTNNAC	3 cut(s)	1307, 1556, 1898
HpyCH4III	ACNGT	6 cut(s)	367, 778, 973, 986, 1055, 1124
HpyCH4IV	ACGT	5 cut(s)	459, 1309, 1328, 1615, 1687
HpyF10VI	GCNNNNNNNGC	3 cut(s)	617, 1406, 1803
HpyF3I	CTNAG	1 cut(s)	855
HpySE526I	ACGT	5 cut(s)	459, 1309, 1328, 1615, 1687
Hsp92II	CATG	7 cut(s)	697, 926, 1336, 1475, 1586, 1727, 1844
HspAI	GCGC	2 cut(s)	281, 1797
KpnI	GGTACC	1 cut(s)	1649
Ksp22I	TGATCA	2 cut(s)	70, 1585
LmnI	GCTCC	1 cut(s)	872
Lsp1109I	GCAGC	3 cut(s)	824, 1699, 1806
LweI	GCATC	6 cut(s)	166, 218, 607, 646, 668, 1843
MaeI	CTAG	2 cut(s)	744, 1488
MaeII	ACGT	5 cut(s)	459, 1309, 1328, 1615, 1687
MaeIII	GTNAC	5 cut(s)	337, 371, 791, 1264, 1616
MbiI	CCGCTC	1 cut(s)	1812
MfeI	CAATTG	1 cut(s)	675
MflI	RGATCY	4 cut(s)	441, 625, 889, 1024
MlsI	TGGCCA	1 cut(s)	30
MluNI	TGGCCA	1 cut(s)	30
MlyI	GAGTC	2 cut(s)	1636, 1741
MmeI	TCCRAC	2 cut(s)	1098, 1889
MnlI	CCTC	8 cut(s)	6, 163, 412, 751, 1091, 1271, 1423, 1468
Mox20I	TGGCCA	1 cut(s)	30
Mph1103I	ATGCAT	2 cut(s)	661, 1836
MroXI	GAANNNNTTC	1 cut(s)	1105
MscI	TGGCCA	1 cut(s)	30
MseI	TTAA	5 cut(s)	35, 41, 270, 1083, 1425
MslI	CAYNNNNRTG	3 cut(s)	542, 825, 1839
Msp20I	TGGCCA	1 cut(s)	30
MspA1I	CMGCKG	1 cut(s)	905
MspI	CCGG	4 cut(s)	20, 445, 1859, 1882
MspR9I	CCNGG	2 cut(s)	142, 1022
MunI	CAATTG	1 cut(s)	675
Mva1269I	GAATGC	1 cut(s)	350
MvaI	CCWGG	2 cut(s)	142, 1022
MwoI	GCNNNNNNNGC	3 cut(s)	617, 1406, 1803
NcoI	CCATGG	1 cut(s)	1332
NdeI	CATATG	1 cut(s)	1214
NlaIII	CATG	7 cut(s)	697, 926, 1336, 1475, 1586, 1727, 1844
NlaIV	GGNNCC	6 cut(s)	18, 1026, 1300, 1536, 1647, 1752
NmuCI	GTSAC	2 cut(s)	791, 1264
NsiI	ATGCAT	2 cut(s)	661, 1836
NspV	TTCGAA	1 cut(s)	158
OliI	CACNNNNGTG	1 cut(s)	825
PaeR7I	CTCGAG	2 cut(s)	8, 1729
PctI	GAATGC	1 cut(s)	350
PdmI	GAANNNNTTC	1 cut(s)	1105
PfeI	GAWTC	9 cut(s)	155, 296, 851, 1220, 1355, 1595, 1664, 1674, 1700
PinAI	ACCGGT	1 cut(s)	19
PkrI	GCNGC	3 cut(s)	814, 1714, 1796
PleI	GAGTC	2 cut(s)	1635, 1740
PpsI	GAGTC	2 cut(s)	1635, 1740
Ppu21I	YACGTR	1 cut(s)	1616
PsiI	TTATAA	4 cut(s)	60, 1523, 1530, 1634
Psp6I	CCWGG	2 cut(s)	140, 1020
PspGI	CCWGG	2 cut(s)	140, 1020
PspN4I	GGNNCC	6 cut(s)	18, 1026, 1300, 1536, 1647, 1752
PspPI	GGNCC	2 cut(s)	982, 1751
PstI	CTGCAG	2 cut(s)	1612, 1717
PstNI	CAGNNNCTG	1 cut(s)	995
PsuI	RGATCY	4 cut(s)	441, 625, 889, 1024
PvuII	CAGCTG	1 cut(s)	905
RsaI	GTAC	4 cut(s)	768, 1555, 1614, 1647
RsaNI	GTAC	4 cut(s)	767, 1554, 1613, 1646
RseI	CAYNNNNRTG	3 cut(s)	542, 825, 1839
SaqAI	TTAA	5 cut(s)	35, 41, 270, 1083, 1425
SatI	GCNGC	3 cut(s)	813, 1713, 1795
Sau96I	GGNCC	2 cut(s)	982, 1751
SchI	GAGTC	2 cut(s)	1636, 1741
ScrFI	CCNGG	2 cut(s)	142, 1022
SfaNI	GCATC	6 cut(s)	166, 218, 607, 646, 668, 1843
SfcI	CTRYAG	4 cut(s)	906, 1608, 1713, 1930
Sfr274I	CTCGAG	2 cut(s)	8, 1729
SfuI	TTCGAA	1 cut(s)	158
SinI	GGWCC	2 cut(s)	982, 1751
SlaI	CTCGAG	2 cut(s)	8, 1729
SmiMI	CAYNNNNRTG	3 cut(s)	542, 825, 1839
SmlI	CTYRAG	2 cut(s)	8, 1729
SmoI	CTYRAG	2 cut(s)	8, 1729
SnaBI	TACGTA	1 cut(s)	1616
SpeI	ACTAGT	1 cut(s)	1487
SsiI	CCGC	5 cut(s)	1088, 1497, 1810, 1838, 1915
SspI	AATATT	1 cut(s)	320
SspMI	CTAG	2 cut(s)	744, 1488
StyD4I	CCNGG	2 cut(s)	140, 1020
StyI	CCWWGG	2 cut(s)	621, 1332
TaaI	ACNGT	6 cut(s)	367, 778, 973, 986, 1055, 1124
TaiI	ACGT	5 cut(s)	462, 1312, 1331, 1618, 1690
TaqI	TCGA	9 cut(s)	9, 158, 788, 1001, 1514, 1568, 1703, 1730, 1783
TatI	WGTACW	1 cut(s)	766
TfiI	GAWTC	9 cut(s)	155, 296, 851, 1220, 1355, 1595, 1664, 1674, 1700
Tru1I	TTAA	5 cut(s)	35, 41, 270, 1083, 1425
Tru9I	TTAA	5 cut(s)	35, 41, 270, 1083, 1425
TscAI	CASTG	2 cut(s)	832, 1045
TseFI	GTSAC	2 cut(s)	791, 1264
TseI	GCWGC	3 cut(s)	812, 1712, 1794
Tsp45I	GTSAC	2 cut(s)	791, 1264
TspDTI	ATGAA	5 cut(s)	17, 273, 774, 1356, 1857
TspRI	CASTG	2 cut(s)	832, 1045
VpaK11BI	GGWCC	2 cut(s)	982, 1751
XagI	CCTNNNNNAGG	1 cut(s)	1548
XapI	RAATTY	3 cut(s)	91, 724, 1435
XhoI	CTCGAG	2 cut(s)	8, 1729
XmnI	GAANNNNTTC	1 cut(s)	1105
XspI	CTAG	2 cut(s)	744, 1488
Zsp2I	ATGCAT	2 cut(s)	661, 1836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.