Rmu_ssc0000359.1_g000022

RNA splicing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000359.1
OG0002800
Physical Location & Seq
Forward (+)
85659 .. 86090
432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000359.1_g000022.1.cds

Sequence Viewer

Length: 432 bp
atggcttctgctttggccacttcctttgcttcccaattgctccctcgcgccccacccaaagatcttcctttgcttcgtcccacagtcgcacctgtgtctgtagctgtgagagtccgagctagcaggtcgttatccgctgtggcggcggcgaagagtaattccaatcctccaccgacgacgaggagccctaacaaaagcagtaaagcagcagaagaagaagaagccgttgaagaagtggaagagggtctaccctggattcaagagaagaccttggacctggtagagttcaccggctctatcacgcaggccattcctggacccagagttggcaccagctccctcccttggattttggctcttcctctcgcttatgccggtctcaattttgtcatcgccgttgtcaagaccgtcaaaaagttctcttccccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

15.06

Weight (kDa)

9.45

Isoelectric Point (pI)

59.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 114
AccB1I GGYRCC 1 cut(s) 329
AccI GTMKAC 1 cut(s) 247
AccII CGCG 1 cut(s) 48
AciI CCGC 3 cut(s) 135, 143, 146
AcoI YGGCCR 1 cut(s) 15
AfiI CCNNNNNNNGG 2 cut(s) 326, 345
AgsI TTSAA 2 cut(s) 230, 260
AjnI CCWGG 3 cut(s) 251, 276, 313
AluBI AGCT 3 cut(s) 104, 119, 336
AluI AGCT 3 cut(s) 104, 119, 336
Alw26I GTCTC 1 cut(s) 383
AoxI GGCC 2 cut(s) 15, 306
ApeKI GCWGC 1 cut(s) 206
AspLEI GCGC 1 cut(s) 50
AspS9I GGNCC 2 cut(s) 274, 317
AsuHPI GGTGA 1 cut(s) 280
AsuNHI GCTAGC 1 cut(s) 119
AvaII GGWCC 2 cut(s) 274, 317
BalI TGGCCA 1 cut(s) 17
BanI GGYRCC 1 cut(s) 329
BanII GRGCYC 1 cut(s) 188
BarI GAAGNNNNNNTAC 2 cut(s) 231, 263
BbsI GAAGAC 1 cut(s) 272
BbvI GCAGC 1 cut(s) 218
BceAI ACGGC 2 cut(s) 209, 380
BciT130I CCWGG 3 cut(s) 253, 278, 315
BcoDI GTCTC 1 cut(s) 383
BfaI CTAG 1 cut(s) 120
BfmI CTRYAG 1 cut(s) 99
BfuAI ACCTGC 1 cut(s) 114
BglII AGATCT 1 cut(s) 61
BisI GCNGC 3 cut(s) 144, 147, 207
BlsI GCNGC 3 cut(s) 145, 148, 208
Bme1390I CCNGG 3 cut(s) 253, 278, 315
Bme18I GGWCC 2 cut(s) 274, 317
BmgT120I GGNCC 2 cut(s) 274, 317
BmiI GGNNCC 3 cut(s) 185, 319, 331
BmrFI CCNGG 3 cut(s) 253, 278, 315
BmtI GCTAGC 1 cut(s) 123
BpiI GAAGAC 1 cut(s) 272
BsaI GGTCTC 1 cut(s) 383
BsaJI CCNNGG 3 cut(s) 251, 270, 344
Bsc4I CCNNNNNNNGG 2 cut(s) 326, 345
Bse118I RCCGGY 2 cut(s) 290, 374
BseBI CCWGG 3 cut(s) 253, 278, 315
BseDI CCNNGG 3 cut(s) 251, 270, 344
BseLI CCNNNNNNNGG 2 cut(s) 326, 345
BseRI GAGGAG 1 cut(s) 196
BseXI GCAGC 1 cut(s) 218
Bsh1236I CGCG 1 cut(s) 48
BshFI GGCC 2 cut(s) 17, 308
BshNI GGYRCC 1 cut(s) 329
BsiSI CCGG 2 cut(s) 291, 375
BslFI GGGAC 1 cut(s) 63
BslI CCNNNNNNNGG 2 cut(s) 326, 345
BsmAI GTCTC 1 cut(s) 383
BsmFI GGGAC 1 cut(s) 63
BsnI GGCC 2 cut(s) 17, 308
Bso31I GGTCTC 1 cut(s) 383
Bsp1286I GDGCHC 1 cut(s) 188
Bsp143I GATC 1 cut(s) 61
BspACI CCGC 3 cut(s) 135, 143, 146
BspANI GGCC 2 cut(s) 17, 308
BspFNI CGCG 1 cut(s) 48
BspLI GGNNCC 3 cut(s) 185, 319, 331
BspMI ACCTGC 1 cut(s) 114
BspOI GCTAGC 1 cut(s) 123
BspQI GCTCTTC 1 cut(s) 363
BspT107I GGYRCC 1 cut(s) 329
BspTNI GGTCTC 1 cut(s) 383
BsrFI RCCGGY 2 cut(s) 290, 374
BssAI RCCGGY 2 cut(s) 290, 374
BssECI CCNNGG 3 cut(s) 251, 270, 344
BssMI GATC 1 cut(s) 61
BssT1I CCWWGG 2 cut(s) 270, 344
Bst2UI CCWGG 3 cut(s) 253, 278, 315
Bst4CI ACNGT 2 cut(s) 85, 409
Bst6I CTCTTC 4 cut(s) 146, 234, 363, 427
BstC8I GCNNGC 2 cut(s) 121, 306
BstFNI CGCG 1 cut(s) 48
BstHHI GCGC 1 cut(s) 50
BstKTI GATC 1 cut(s) 64
BstMAI GTCTC 1 cut(s) 383
BstMBI GATC 1 cut(s) 61
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstNI CCWGG 3 cut(s) 253, 278, 315
BstSCI CCNGG 3 cut(s) 251, 276, 313
BstSFI CTRYAG 1 cut(s) 99
BstUI CGCG 1 cut(s) 48
BstV1I GCAGC 1 cut(s) 218
BstV2I GAAGAC 1 cut(s) 272
BstX2I RGATCY 1 cut(s) 61
BstYI RGATCY 1 cut(s) 61
BsuRI GGCC 2 cut(s) 17, 308
BtgZI GCGATG 1 cut(s) 376
BveI ACCTGC 1 cut(s) 114
Cac8I GCNNGC 2 cut(s) 121, 306
CfoI GCGC 1 cut(s) 50
Cfr10I RCCGGY 2 cut(s) 290, 374
Cfr13I GGNCC 2 cut(s) 274, 317
CsiI ACCWGGT 1 cut(s) 276
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
DpnI GATC 1 cut(s) 63
DpnII GATC 1 cut(s) 61
EaeI YGGCCR 1 cut(s) 15
Eam1104I CTCTTC 4 cut(s) 146, 234, 363, 427
EarI CTCTTC 4 cut(s) 146, 234, 363, 427
Eco130I CCWWGG 2 cut(s) 270, 344
Eco24I GRGCYC 1 cut(s) 188
Eco31I GGTCTC 1 cut(s) 383
Eco47I GGWCC 2 cut(s) 274, 317
EcoRII CCWGG 3 cut(s) 251, 276, 313
EcoT14I CCWWGG 2 cut(s) 270, 344
EcoT38I GRGCYC 1 cut(s) 188
ErhI CCWWGG 2 cut(s) 270, 344
FaiI YATR 1 cut(s) 372
FaqI GGGAC 1 cut(s) 63
FblI GTMKAC 1 cut(s) 247
Fnu4HI GCNGC 3 cut(s) 144, 147, 207
FriOI GRGCYC 1 cut(s) 188
Fsp4HI GCNGC 3 cut(s) 144, 147, 207
FspBI CTAG 1 cut(s) 120
GlaI GCGC 1 cut(s) 49
GluI GCNGC 3 cut(s) 144, 147, 207
HaeIII GGCC 2 cut(s) 17, 308
HapII CCGG 2 cut(s) 291, 375
HhaI GCGC 1 cut(s) 50
Hin6I GCGC 1 cut(s) 48
HinP1I GCGC 1 cut(s) 48
HinfI GANTC 2 cut(s) 111, 256
HpaII CCGG 2 cut(s) 291, 375
HphI GGTGA 1 cut(s) 280
Hpy166II GTNNAC 2 cut(s) 248, 288
Hpy188I TCNGA 1 cut(s) 116
Hpy188III TCNNGA 2 cut(s) 260, 403
Hpy8I GTNNAC 2 cut(s) 248, 288
Hpy99I CGWCG 2 cut(s) 178, 181
HpyCH4III ACNGT 2 cut(s) 85, 409
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
HspAI GCGC 1 cut(s) 48
Kzo9I GATC 1 cut(s) 61
LguI GCTCTTC 1 cut(s) 363
LmnI GCTCC 3 cut(s) 45, 183, 341
Lsp1109I GCAGC 1 cut(s) 218
MabI ACCWGGT 1 cut(s) 276
MaeI CTAG 1 cut(s) 120
MalI GATC 1 cut(s) 63
MboI GATC 1 cut(s) 61
MfeI CAATTG 1 cut(s) 35
MflI RGATCY 1 cut(s) 61
MhlI GDGCHC 1 cut(s) 188
MlsI TGGCCA 1 cut(s) 17
MluCI AATT 3 cut(s) 35, 157, 382
MluNI TGGCCA 1 cut(s) 17
MlyI GAGTC 1 cut(s) 120
MnlI CCTC 6 cut(s) 54, 174, 177, 235, 350, 372
Mox20I TGGCCA 1 cut(s) 17
MscI TGGCCA 1 cut(s) 17
Msp20I TGGCCA 1 cut(s) 17
MspA1I CMGCKG 1 cut(s) 137
MspI CCGG 2 cut(s) 291, 375
MspR9I CCNGG 3 cut(s) 253, 278, 315
MunI CAATTG 1 cut(s) 35
MvaI CCWGG 3 cut(s) 253, 278, 315
MvnI CGCG 1 cut(s) 48
MwoI GCNNNNNNNGC 1 cut(s) 143
NdeII GATC 1 cut(s) 61
NheI GCTAGC 1 cut(s) 119
NlaIV GGNNCC 3 cut(s) 185, 319, 331
PciSI GCTCTTC 1 cut(s) 363
PfeI GAWTC 1 cut(s) 256
PfoI TCCNGGA 1 cut(s) 313
PkrI GCNGC 3 cut(s) 145, 148, 208
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
Psp6I CCWGG 3 cut(s) 251, 276, 313
PspGI CCWGG 3 cut(s) 251, 276, 313
PspN4I GGNNCC 3 cut(s) 185, 319, 331
PspPI GGNCC 2 cut(s) 274, 317
PsuI RGATCY 1 cut(s) 61
SapI GCTCTTC 1 cut(s) 363
SatI GCNGC 3 cut(s) 144, 147, 207
Sau3AI GATC 1 cut(s) 61
Sau96I GGNCC 2 cut(s) 274, 317
SchI GAGTC 1 cut(s) 120
ScrFI CCNGG 3 cut(s) 253, 278, 315
SduI GDGCHC 1 cut(s) 188
SetI ASST 7 cut(s) 94, 106, 121, 128, 272, 279, 338
SexAI ACCWGGT 1 cut(s) 276
SfcI CTRYAG 1 cut(s) 99
SinI GGWCC 2 cut(s) 274, 317
Sse9I AATT 3 cut(s) 35, 157, 382
SsiI CCGC 3 cut(s) 135, 143, 146
SspMI CTAG 1 cut(s) 120
StyD4I CCNGG 3 cut(s) 251, 276, 313
StyI CCWWGG 2 cut(s) 270, 344
TaaI ACNGT 2 cut(s) 85, 409
TasI AATT 3 cut(s) 35, 157, 382
TauI GCSGC 2 cut(s) 146, 149
TfiI GAWTC 1 cut(s) 256
TseI GCWGC 1 cut(s) 206
VpaK11BI GGWCC 2 cut(s) 274, 317
XmiI GTMKAC 1 cut(s) 247
XspI CTAG 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.