RchiOBHm_Chr3g0483731

RNA splicing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0002800
Physical Location & Seq
Forward (+)
30023285 .. 30027002
3718 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44847

Sequence Viewer

Length: 318 bp
ATGTTTCAGAATGGCTCCGACCAAATCACGCCTGATGCCCTGAAACAACTCGTGCAAAATACAGGTTTTGGTGTGGAGGAGATTTTGCGCAAGTACATCTGTTATACTTTGAATGAAAAGCCATTCAACCCAGACATGGTTTCCAATTTAATTCAGCTCAGGAAAGCTTCTTTGTTCGATGATTCTCAGGTGGCTAAAATTCTAAATGAAATTTCAAGAAGAATTGTGCGAGACAAAGGTAAAGCGTTGACCTACTACTATCATCACTTGTATGATCTAATTACACAATACTCCCTTTTCCATATAAAAATAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

12.31

Weight (kDa)

8.69

Isoelectric Point (pI)

35.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARMH5 PF22915 21 - 83 1.3e-23 Armadillo-like helical domain-containing protein 5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 89
AcsI RAATTY 2 cut(s) 198, 210
AfaI GTAC 1 cut(s) 95
AfiI CCNNNNNNNGG 1 cut(s) 136
AgsI TTSAA 3 cut(s) 112, 127, 216
AluBI AGCT 2 cut(s) 157, 167
AluI AGCT 2 cut(s) 157, 167
Alw26I GTCTC 1 cut(s) 225
ApoI RAATTY 2 cut(s) 198, 210
AspLEI GCGC 1 cut(s) 90
BauI CACGAG 1 cut(s) 50
BcoDI GTCTC 1 cut(s) 225
BmiI GGNNCC 1 cut(s) 16
BmsI GCATC 1 cut(s) 25
Bpu10I CCTNAGC 1 cut(s) 158
Bsc4I CCNNNNNNNGG 1 cut(s) 136
BseLI CCNNNNNNNGG 1 cut(s) 136
BseMII CTCAG 2 cut(s) 172, 200
BseRI GAGGAG 1 cut(s) 92
BslI CCNNNNNNNGG 1 cut(s) 136
BsmAI GTCTC 1 cut(s) 225
Bsp143I GATC 1 cut(s) 274
BspCNI CTCAG 2 cut(s) 171, 199
BspLI GGNNCC 1 cut(s) 16
BssMI GATC 1 cut(s) 274
BssSI CACGAG 1 cut(s) 50
Bst2BI CACGAG 1 cut(s) 50
BstDEI CTNAG 2 cut(s) 158, 186
BstHHI GCGC 1 cut(s) 90
BstKTI GATC 1 cut(s) 277
BstMAI GTCTC 1 cut(s) 225
BstMBI GATC 1 cut(s) 274
CfoI GCGC 1 cut(s) 90
Csp6I GTAC 1 cut(s) 94
CviAII CATG 1 cut(s) 136
CviJI RGCY 5 cut(s) 15, 121, 157, 167, 194
CviKI_1 RGCY 5 cut(s) 15, 121, 157, 167, 194
CviQI GTAC 1 cut(s) 94
DdeI CTNAG 2 cut(s) 158, 186
DpnI GATC 1 cut(s) 276
DpnII GATC 1 cut(s) 274
FaeI CATG 1 cut(s) 139
FaiI YATR 5 cut(s) 105, 137, 273, 303, 305
FatI CATG 1 cut(s) 135
FspI TGCGCA 1 cut(s) 89
GlaI GCGC 1 cut(s) 89
HhaI GCGC 1 cut(s) 90
Hin1II CATG 1 cut(s) 139
Hin6I GCGC 1 cut(s) 88
HinP1I GCGC 1 cut(s) 88
HincII GTYRAC 1 cut(s) 249
HindII GTYRAC 1 cut(s) 249
HindIII AAGCTT 1 cut(s) 165
HinfI GANTC 1 cut(s) 182
Hpy166II GTNNAC 1 cut(s) 249
Hpy188I TCNGA 3 cut(s) 9, 19, 317
Hpy188III TCNNGA 2 cut(s) 160, 216
Hpy8I GTNNAC 1 cut(s) 249
HpyCH4V TGCA 1 cut(s) 55
HpyF3I CTNAG 2 cut(s) 158, 186
Hsp92II CATG 1 cut(s) 139
HspAI GCGC 1 cut(s) 88
Kzo9I GATC 1 cut(s) 274
LmnI GCTCC 1 cut(s) 20
LpnPI CCDG 6 cut(s) 45, 48, 53, 144, 145, 173
LweI GCATC 1 cut(s) 25
MalI GATC 1 cut(s) 276
MboI GATC 1 cut(s) 274
MboII GAAGA 1 cut(s) 231
MluCI AATT 6 cut(s) 145, 150, 198, 210, 222, 279
MmeI TCCRAC 1 cut(s) 42
MnlI CCTC 1 cut(s) 70
MseI TTAA 1 cut(s) 149
MslI CAYNNNNRTG 1 cut(s) 270
NdeII GATC 1 cut(s) 274
NlaIII CATG 1 cut(s) 139
NlaIV GGNNCC 1 cut(s) 16
NsbI TGCGCA 1 cut(s) 89
PfeI GAWTC 1 cut(s) 182
PspN4I GGNNCC 1 cut(s) 16
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
RseI CAYNNNNRTG 1 cut(s) 270
SaqAI TTAA 1 cut(s) 149
Sau3AI GATC 1 cut(s) 274
SetI ASST 6 cut(s) 67, 159, 169, 192, 241, 254
SfaNI GCATC 1 cut(s) 25
SmiMI CAYNNNNRTG 1 cut(s) 270
Sse9I AATT 6 cut(s) 145, 150, 198, 210, 222, 279
TaqI TCGA 1 cut(s) 177
TasI AATT 6 cut(s) 145, 150, 198, 210, 222, 279
TatI WGTACW 1 cut(s) 93
TfiI GAWTC 1 cut(s) 182
Tru1I TTAA 1 cut(s) 149
Tru9I TTAA 1 cut(s) 149
TspDTI ATGAA 2 cut(s) 129, 222
XapI RAATTY 2 cut(s) 198, 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.