Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8235609.1

Orthogroup ID

OG0002800

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 552

Gene Structure 552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8235609.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

atggcttccgctttggccacttcctttgcttcccaattgctccctcgcgccccacccaaaggtctccctttgcttcgtcccacagtagcacctgtgtccggagctgtgagagtccgagctagcaggtcgttatccgctgtggcggcggcgaagagtaattccaatcctccgccgacgacgacgacgagccctaacaaaagcagtaaagcagcagcagaagaagaagccgttgaagaagtggaagaggatctaccctggattcaagagaaggccttggacctggtggagttcaccggctctgtcacgcaggccattcctggacccagagttggcaccagctctctcccttggattttggctcttcctctcgcttatgccggtctcacttttgtcatcgccgttgtcaagaccgtcaaaaagttctcttcccctcgacataaacgcaagaaactg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

151

Amino Acids

15.89

Weight (kDa)

10.13

Isoelectric Point (pI)

56.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08540
fragaria_vesca	FvH4_4g37340
malus_domestica	MD13G1000800.v1.1 MD16G1004900.v1.1
prunus_persica	Prupe.1G351900_v2.0.a1
pyrus_communis	pycom13g00070
rosa_chinensis	RchiOBHm_Chr1g0316621 RchiOBHm_Chr3g0483721 RchiOBHm_Chr3g0483731 RchiOBHm_Chr4g0403031 RchiOBHm_Chr4g0447201 RchiOBHm_Chr6g0263291
rosa_laevigata	RLG00000005597
rosa_multiflora	Rmu_co8235609.1_g000001 Rmu_sc0000101.1_g000002 Rmu_sc0000310.1_g000018 Rmu_sc0001241.1_g000043 Rmu_ssc0000359.1_g000022
rosa_roxburghii	Rroxscaffold_5G00387570
rosa_rugosa	Rorug04G0379000
rosa_samantha	Rh1AG022300 Rh2BG461100 Rh2CG299400 Rh3AG256400 Rh4AG023400 Rh4AG023500 Rh4AG440200 Rh4BG449200 Rh4CG466200 Rh4DG447700 Rh5CG543000 Rh6AG123500 Rh6BG118500 Rh6CG116600 Rh6DG105200
rosa_wichuraiana	Rw1G002360 Rw4G001660 Rw4G037660 Rw6G025410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	114
AccB1I	GGYRCC	1 cut(s)	332
AccII	CGCG	1 cut(s)	48
AccIII	TCCGGA	1 cut(s)	98
AciI	CCGC	5 cut(s)	9, 135, 143, 146, 170
AclWI	GGATC	1 cut(s)	255
AcoI	YGGCCR	1 cut(s)	15
AfiI	CCNNNNNNNGG	3 cut(s)	59, 98, 329
AgsI	TTSAA	2 cut(s)	233, 263
AjnI	CCWGG	3 cut(s)	254, 279, 316
AluBI	AGCT	3 cut(s)	104, 119, 339
AluI	AGCT	3 cut(s)	104, 119, 339
Alw26I	GTCTC	2 cut(s)	68, 386
AlwI	GGATC	1 cut(s)	255
Aor13HI	TCCGGA	1 cut(s)	98
AoxI	GGCC	3 cut(s)	15, 270, 309
ApeKI	GCWGC	2 cut(s)	209, 212
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	2 cut(s)	277, 320
AsuHPI	GGTGA	1 cut(s)	283
AsuNHI	GCTAGC	1 cut(s)	119
AvaII	GGWCC	2 cut(s)	277, 320
BalI	TGGCCA	1 cut(s)	17
BanI	GGYRCC	1 cut(s)	332
BanII	GRGCYC	1 cut(s)	191
BarI	GAAGNNNNNNTAC	2 cut(s)	234, 266
BbvI	GCAGC	2 cut(s)	221, 224
BceAI	ACGGC	2 cut(s)	212, 383
BciT130I	CCWGG	3 cut(s)	256, 281, 318
BcoDI	GTCTC	2 cut(s)	68, 386
BfaI	CTAG	1 cut(s)	120
BfuAI	ACCTGC	1 cut(s)	114
BisI	GCNGC	4 cut(s)	144, 147, 210, 213
BlsI	GCNGC	4 cut(s)	145, 148, 211, 214
Bme1390I	CCNGG	3 cut(s)	256, 281, 318
Bme18I	GGWCC	2 cut(s)	277, 320
BmgT120I	GGNCC	2 cut(s)	277, 320
BmiI	GGNNCC	2 cut(s)	322, 334
BmrFI	CCNGG	3 cut(s)	256, 281, 318
BmtI	GCTAGC	1 cut(s)	123
BsaI	GGTCTC	2 cut(s)	68, 386
BsaJI	CCNNGG	3 cut(s)	254, 273, 347
BsaWI	WCCGGW	1 cut(s)	98
Bsc4I	CCNNNNNNNGG	3 cut(s)	59, 98, 329
Bse118I	RCCGGY	2 cut(s)	293, 377
BseAI	TCCGGA	1 cut(s)	98
BseBI	CCWGG	3 cut(s)	256, 281, 318
BseDI	CCNNGG	3 cut(s)	254, 273, 347
BseLI	CCNNNNNNNGG	3 cut(s)	59, 98, 329
BseXI	GCAGC	2 cut(s)	221, 224
Bsh1236I	CGCG	1 cut(s)	48
BshFI	GGCC	3 cut(s)	17, 272, 311
BshNI	GGYRCC	1 cut(s)	332
BsiSI	CCGG	3 cut(s)	99, 294, 378
BslFI	GGGAC	1 cut(s)	63
BslI	CCNNNNNNNGG	3 cut(s)	59, 98, 329
BsmAI	GTCTC	2 cut(s)	68, 386
BsmFI	GGGAC	1 cut(s)	63
BsnI	GGCC	3 cut(s)	17, 272, 311
Bso31I	GGTCTC	2 cut(s)	68, 386
Bsp1286I	GDGCHC	1 cut(s)	191
Bsp13I	TCCGGA	1 cut(s)	98
Bsp143I	GATC	1 cut(s)	247
BspACI	CCGC	5 cut(s)	9, 135, 143, 146, 170
BspANI	GGCC	3 cut(s)	17, 272, 311
BspEI	TCCGGA	1 cut(s)	98
BspFNI	CGCG	1 cut(s)	48
BspLI	GGNNCC	2 cut(s)	322, 334
BspMI	ACCTGC	1 cut(s)	114
BspOI	GCTAGC	1 cut(s)	123
BspPI	GGATC	1 cut(s)	255
BspQI	GCTCTTC	1 cut(s)	366
BspT107I	GGYRCC	1 cut(s)	332
BspTNI	GGTCTC	2 cut(s)	68, 386
BsrFI	RCCGGY	2 cut(s)	293, 377
BssAI	RCCGGY	2 cut(s)	293, 377
BssECI	CCNNGG	3 cut(s)	254, 273, 347
BssMI	GATC	1 cut(s)	247
BssT1I	CCWWGG	2 cut(s)	273, 347
Bst2UI	CCWGG	3 cut(s)	256, 281, 318
Bst4CI	ACNGT	2 cut(s)	85, 412
Bst6I	CTCTTC	4 cut(s)	146, 237, 366, 430
BstC8I	GCNNGC	2 cut(s)	121, 309
BstFNI	CGCG	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	1 cut(s)	250
BstMAI	GTCTC	2 cut(s)	68, 386
BstMBI	GATC	1 cut(s)	247
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstNI	CCWGG	3 cut(s)	256, 281, 318
BstSCI	CCNGG	3 cut(s)	254, 279, 316
BstUI	CGCG	1 cut(s)	48
BstV1I	GCAGC	2 cut(s)	221, 224
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
BsuRI	GGCC	3 cut(s)	17, 272, 311
BtgZI	GCGATG	1 cut(s)	379
BveI	ACCTGC	1 cut(s)	114
Cac8I	GCNNGC	2 cut(s)	121, 309
CfoI	GCGC	1 cut(s)	50
Cfr10I	RCCGGY	2 cut(s)	293, 377
Cfr13I	GGNCC	2 cut(s)	277, 320
CsiI	ACCWGGT	1 cut(s)	279
CspCI	CAANNNNNGTGG	2 cut(s)	7, 42
DpnI	GATC	1 cut(s)	249
DpnII	GATC	1 cut(s)	247
EaeI	YGGCCR	1 cut(s)	15
Eam1104I	CTCTTC	4 cut(s)	146, 237, 366, 430
EarI	CTCTTC	4 cut(s)	146, 237, 366, 430
EciI	GGCGGA	1 cut(s)	159
Eco130I	CCWWGG	2 cut(s)	273, 347
Eco147I	AGGCCT	1 cut(s)	272
Eco24I	GRGCYC	1 cut(s)	191
Eco31I	GGTCTC	2 cut(s)	68, 386
Eco47I	GGWCC	2 cut(s)	277, 320
EcoRII	CCWGG	3 cut(s)	254, 279, 316
EcoT14I	CCWWGG	2 cut(s)	273, 347
EcoT38I	GRGCYC	1 cut(s)	191
ErhI	CCWWGG	2 cut(s)	273, 347
FaiI	YATR	2 cut(s)	375, 438
FaqI	GGGAC	1 cut(s)	63
Fnu4HI	GCNGC	4 cut(s)	144, 147, 210, 213
FriOI	GRGCYC	1 cut(s)	191
Fsp4HI	GCNGC	4 cut(s)	144, 147, 210, 213
FspBI	CTAG	1 cut(s)	120
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	4 cut(s)	144, 147, 210, 213
HaeIII	GGCC	3 cut(s)	17, 272, 311
HapII	CCGG	3 cut(s)	99, 294, 378
HhaI	GCGC	1 cut(s)	50
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HinfI	GANTC	2 cut(s)	111, 259
HpaII	CCGG	3 cut(s)	99, 294, 378
HphI	GGTGA	1 cut(s)	283
Hpy166II	GTNNAC	1 cut(s)	291
Hpy188I	TCNGA	1 cut(s)	116
Hpy188III	TCNNGA	3 cut(s)	99, 263, 406
Hpy8I	GTNNAC	1 cut(s)	291
Hpy99I	CGWCG	4 cut(s)	178, 181, 184, 187
HpyAV	CCTTC	1 cut(s)	262
HpyCH4III	ACNGT	2 cut(s)	85, 412
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
HspAI	GCGC	1 cut(s)	48
Kpn2I	TCCGGA	1 cut(s)	98
Kzo9I	GATC	1 cut(s)	247
LguI	GCTCTTC	1 cut(s)	366
LmnI	GCTCC	2 cut(s)	45, 101
Lsp1109I	GCAGC	2 cut(s)	221, 224
MabI	ACCWGGT	1 cut(s)	279
MaeI	CTAG	1 cut(s)	120
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	1 cut(s)	249
MboI	GATC	1 cut(s)	247
MboII	GAAGA	7 cut(s)	163, 230, 233, 245, 254, 353, 417
MfeI	CAATTG	1 cut(s)	35
MflI	RGATCY	1 cut(s)	247
MhlI	GDGCHC	1 cut(s)	191
MlsI	TGGCCA	1 cut(s)	17
MluCI	AATT	2 cut(s)	35, 157
MluNI	TGGCCA	1 cut(s)	17
MlyI	GAGTC	1 cut(s)	120
MnlI	CCTC	5 cut(s)	54, 177, 238, 375, 441
Mox20I	TGGCCA	1 cut(s)	17
MroI	TCCGGA	1 cut(s)	98
MscI	TGGCCA	1 cut(s)	17
Msp20I	TGGCCA	1 cut(s)	17
MspA1I	CMGCKG	1 cut(s)	137
MspI	CCGG	3 cut(s)	99, 294, 378
MspR9I	CCNGG	3 cut(s)	256, 281, 318
MunI	CAATTG	1 cut(s)	35
MvaI	CCWGG	3 cut(s)	256, 281, 318
MvnI	CGCG	1 cut(s)	48
MwoI	GCNNNNNNNGC	1 cut(s)	143
NdeII	GATC	1 cut(s)	247
NheI	GCTAGC	1 cut(s)	119
NlaIV	GGNNCC	2 cut(s)	322, 334
NmuCI	GTSAC	1 cut(s)	301
PceI	AGGCCT	1 cut(s)	272
PciSI	GCTCTTC	1 cut(s)	366
PcsI	WCGNNNNNNNCGW	1 cut(s)	182
PfeI	GAWTC	1 cut(s)	259
PfoI	TCCNGGA	1 cut(s)	316
PkrI	GCNGC	4 cut(s)	145, 148, 211, 214
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
Psp6I	CCWGG	3 cut(s)	254, 279, 316
PspGI	CCWGG	3 cut(s)	254, 279, 316
PspN4I	GGNNCC	2 cut(s)	322, 334
PspPI	GGNCC	2 cut(s)	277, 320
PsuI	RGATCY	1 cut(s)	247
SapI	GCTCTTC	1 cut(s)	366
SatI	GCNGC	4 cut(s)	144, 147, 210, 213
Sau3AI	GATC	1 cut(s)	247
Sau96I	GGNCC	2 cut(s)	277, 320
SchI	GAGTC	1 cut(s)	120
ScrFI	CCNGG	3 cut(s)	256, 281, 318
SduI	GDGCHC	1 cut(s)	191
SetI	ASST	7 cut(s)	64, 94, 106, 121, 128, 282, 341
SexAI	ACCWGGT	1 cut(s)	279
SinI	GGWCC	2 cut(s)	277, 320
Sse9I	AATT	2 cut(s)	35, 157
SseBI	AGGCCT	1 cut(s)	272
SsiI	CCGC	5 cut(s)	9, 135, 143, 146, 170
SspMI	CTAG	1 cut(s)	120
StuI	AGGCCT	1 cut(s)	272
StyD4I	CCNGG	3 cut(s)	254, 279, 316
StyI	CCWWGG	2 cut(s)	273, 347
TaaI	ACNGT	2 cut(s)	85, 412
TaqI	TCGA	1 cut(s)	433
TasI	AATT	2 cut(s)	35, 157
TauI	GCSGC	2 cut(s)	146, 149
TfiI	GAWTC	1 cut(s)	259
TseFI	GTSAC	1 cut(s)	301
TseI	GCWGC	2 cut(s)	209, 212
Tsp45I	GTSAC	1 cut(s)	301
VpaK11BI	GGWCC	2 cut(s)	277, 320
XspI	CTAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.