RchiOBHm_Chr4g0403031

RNA splicing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0002800
Physical Location & Seq
Reverse (-)
22016731 .. 22017643
913 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37480

Sequence Viewer

Length: 483 bp
ATGAGCCCTAAAAAAAGCAGTAAAGCAGCAGAAGAAGAAGAAGCTGTTGAAGAAGTGGAAGAGGTTCTACCCTGGATTCAAGAGAAGGCCTTGGACCTGGTGGATTTCACCGGCTTTGTCACACAGGCCATTCCTAGATCCAGAGTTGGTCTTCCTCTCGCTTATGCCGGTCTCACTTTTGTCATCGCCGTTGTCAAGACCGTTAAAAAGTTCTCTTCCCCTCGATATAAACGCAAGAAACTGACAGGTTTTGGCATGGAGGAGATTTTGTGCAAGTACATCCGTTATATTTTGAATGAAAAGCCATTCAACCCAAACATGGTTTCCAATTTAATTCAGCTCAGGAAAGCTTCTTTGTTCAATGATTCTCAGGTGGCTGAAATTCTAAATGAAATTTCAAGAAGAATTGTGAGAAGACATCGGCCAAAAACCGATGAGAATTATGTAGAATTATGGCCCCAGACATCGGCCAAAAACCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

18.46

Weight (kDa)

9.54

Isoelectric Point (pI)

61.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARMH5 PF22915 82 - 139 3.9e-21 Armadillo-like helical domain-containing protein 5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 132
AcoI YGGCCR 2 cut(s) 422, 468
AcsI RAATTY 2 cut(s) 381, 393
AfaI GTAC 1 cut(s) 278
AfiI CCNNNNNNNGG 2 cut(s) 319, 466
AgsI TTSAA 6 cut(s) 50, 80, 295, 310, 361, 399
AjnI CCWGG 2 cut(s) 71, 96
AjuI GAANNNNNNNTTGG 2 cut(s) 307, 339
AluBI AGCT 3 cut(s) 44, 340, 350
AluI AGCT 3 cut(s) 44, 340, 350
Alw26I GTCTC 1 cut(s) 176
AlwI GGATC 1 cut(s) 132
AoxI GGCC 5 cut(s) 87, 126, 422, 455, 468
ApeKI GCWGC 1 cut(s) 26
ApoI RAATTY 2 cut(s) 381, 393
Asp700I GAANNNNTTC 1 cut(s) 63
AspS9I GGNCC 2 cut(s) 94, 456
AsuHPI GGTGA 1 cut(s) 100
AvaII GGWCC 1 cut(s) 94
BanII GRGCYC 1 cut(s) 8
BarI GAAGNNNNNNTAC 2 cut(s) 51, 83
BbsI GAAGAC 2 cut(s) 143, 421
BbvI GCAGC 1 cut(s) 38
BceAI ACGGC 1 cut(s) 173
BciT130I CCWGG 2 cut(s) 73, 98
BcoDI GTCTC 1 cut(s) 176
BfaI CTAG 1 cut(s) 135
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
Bme1390I CCNGG 2 cut(s) 73, 98
Bme18I GGWCC 1 cut(s) 94
BmgT120I GGNCC 2 cut(s) 94, 456
BmiI GGNNCC 1 cut(s) 458
BmrFI CCNGG 2 cut(s) 73, 98
BpiI GAAGAC 2 cut(s) 143, 421
Bpu10I CCTNAGC 1 cut(s) 341
BsaI GGTCTC 1 cut(s) 176
BsaJI CCNNGG 2 cut(s) 71, 90
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bsc4I CCNNNNNNNGG 2 cut(s) 319, 466
Bse118I RCCGGY 2 cut(s) 110, 167
BseBI CCWGG 2 cut(s) 73, 98
BseDI CCNNGG 2 cut(s) 71, 90
BseGI GGATG 1 cut(s) 279
BseLI CCNNNNNNNGG 2 cut(s) 319, 466
BseMII CTCAG 2 cut(s) 355, 383
BseRI GAGGAG 1 cut(s) 275
BseXI GCAGC 1 cut(s) 38
BshFI GGCC 5 cut(s) 89, 128, 424, 457, 470
BsiSI CCGG 2 cut(s) 111, 168
BslI CCNNNNNNNGG 2 cut(s) 319, 466
BsmAI GTCTC 1 cut(s) 176
BsnI GGCC 5 cut(s) 89, 128, 424, 457, 470
Bso31I GGTCTC 1 cut(s) 176
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 1 cut(s) 137
BspANI GGCC 5 cut(s) 89, 128, 424, 457, 470
BspCNI CTCAG 2 cut(s) 354, 382
BspLI GGNNCC 1 cut(s) 458
BspPI GGATC 1 cut(s) 132
BspTNI GGTCTC 1 cut(s) 176
BsrFI RCCGGY 2 cut(s) 110, 167
BssAI RCCGGY 2 cut(s) 110, 167
BssECI CCNNGG 2 cut(s) 71, 90
BssMI GATC 1 cut(s) 137
BssT1I CCWWGG 1 cut(s) 90
Bst2UI CCWGG 2 cut(s) 73, 98
Bst4CI ACNGT 1 cut(s) 202
Bst6I CTCTTC 2 cut(s) 54, 220
BstDEI CTNAG 2 cut(s) 341, 369
BstF5I GGATG 1 cut(s) 279
BstKTI GATC 1 cut(s) 140
BstMAI GTCTC 1 cut(s) 176
BstMBI GATC 1 cut(s) 137
BstNI CCWGG 2 cut(s) 73, 98
BstSCI CCNGG 2 cut(s) 71, 96
BstV1I GCAGC 1 cut(s) 38
BstV2I GAAGAC 2 cut(s) 143, 421
BstX2I RGATCY 1 cut(s) 137
BstYI RGATCY 1 cut(s) 137
BsuRI GGCC 5 cut(s) 89, 128, 424, 457, 470
BtgZI GCGATG 1 cut(s) 169
BtsCI GGATG 1 cut(s) 279
Cfr10I RCCGGY 2 cut(s) 110, 167
Cfr13I GGNCC 2 cut(s) 94, 456
CsiI ACCWGGT 1 cut(s) 96
Csp6I GTAC 1 cut(s) 277
CviAII CATG 2 cut(s) 256, 319
CviQI GTAC 1 cut(s) 277
DdeI CTNAG 2 cut(s) 341, 369
DpnI GATC 1 cut(s) 139
DpnII GATC 1 cut(s) 137
EaeI YGGCCR 2 cut(s) 422, 468
Eam1104I CTCTTC 2 cut(s) 54, 220
EarI CTCTTC 2 cut(s) 54, 220
Eco130I CCWWGG 1 cut(s) 90
Eco147I AGGCCT 1 cut(s) 89
Eco24I GRGCYC 1 cut(s) 8
Eco31I GGTCTC 1 cut(s) 176
Eco47I GGWCC 1 cut(s) 94
EcoRII CCWGG 2 cut(s) 71, 96
EcoT14I CCWWGG 1 cut(s) 90
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 2 cut(s) 259, 322
FaiI YATR 7 cut(s) 165, 228, 257, 288, 320, 444, 454
FatI CATG 2 cut(s) 255, 318
Fnu4HI GCNGC 1 cut(s) 27
FokI GGATG 1 cut(s) 266
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 1 cut(s) 27
FspBI CTAG 1 cut(s) 135
GluI GCNGC 1 cut(s) 27
HaeIII GGCC 5 cut(s) 89, 128, 424, 457, 470
HapII CCGG 2 cut(s) 111, 168
Hin1II CATG 2 cut(s) 259, 322
HindIII AAGCTT 1 cut(s) 348
HinfI GANTC 2 cut(s) 76, 365
HpaII CCGG 2 cut(s) 111, 168
HphI GGTGA 1 cut(s) 100
Hpy188III TCNNGA 5 cut(s) 80, 141, 196, 343, 399
HpyAV CCTTC 1 cut(s) 79
HpyCH4III ACNGT 1 cut(s) 202
HpyCH4V TGCA 1 cut(s) 273
HpyF3I CTNAG 2 cut(s) 341, 369
Hsp92II CATG 2 cut(s) 259, 322
Kzo9I GATC 1 cut(s) 137
Lsp1109I GCAGC 1 cut(s) 38
MabI ACCWGGT 1 cut(s) 96
MaeI CTAG 1 cut(s) 135
MaeIII GTNAC 1 cut(s) 118
MalI GATC 1 cut(s) 139
MboI GATC 1 cut(s) 137
MboII GAAGA 9 cut(s) 44, 47, 50, 62, 71, 143, 207, 414, 426
MflI RGATCY 1 cut(s) 137
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 7 cut(s) 328, 333, 381, 393, 405, 439, 449
MnlI CCTC 4 cut(s) 55, 165, 231, 253
MroXI GAANNNNTTC 1 cut(s) 63
MseI TTAA 2 cut(s) 204, 332
MspI CCGG 2 cut(s) 111, 168
MspR9I CCNGG 2 cut(s) 73, 98
MvaI CCWGG 2 cut(s) 73, 98
NdeII GATC 1 cut(s) 137
NlaIII CATG 2 cut(s) 259, 322
NlaIV GGNNCC 1 cut(s) 458
NmuCI GTSAC 1 cut(s) 118
PceI AGGCCT 1 cut(s) 89
PdmI GAANNNNTTC 1 cut(s) 63
PfeI GAWTC 2 cut(s) 76, 365
PkrI GCNGC 1 cut(s) 28
Psp6I CCWGG 2 cut(s) 71, 96
PspGI CCWGG 2 cut(s) 71, 96
PspN4I GGNNCC 1 cut(s) 458
PspPI GGNCC 2 cut(s) 94, 456
PsuI RGATCY 1 cut(s) 137
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
SaqAI TTAA 2 cut(s) 204, 332
SatI GCNGC 1 cut(s) 27
Sau3AI GATC 1 cut(s) 137
Sau96I GGNCC 2 cut(s) 94, 456
ScrFI CCNGG 2 cut(s) 73, 98
SduI GDGCHC 1 cut(s) 8
SetI ASST 7 cut(s) 46, 66, 99, 250, 342, 352, 375
SexAI ACCWGGT 1 cut(s) 96
SinI GGWCC 1 cut(s) 94
Sse9I AATT 7 cut(s) 328, 333, 381, 393, 405, 439, 449
SseBI AGGCCT 1 cut(s) 89
SspMI CTAG 1 cut(s) 135
StuI AGGCCT 1 cut(s) 89
StyD4I CCNGG 2 cut(s) 71, 96
StyI CCWWGG 1 cut(s) 90
TaaI ACNGT 1 cut(s) 202
TaqI TCGA 1 cut(s) 223
TasI AATT 7 cut(s) 328, 333, 381, 393, 405, 439, 449
TatI WGTACW 1 cut(s) 276
TfiI GAWTC 2 cut(s) 76, 365
Tru1I TTAA 2 cut(s) 204, 332
Tru9I TTAA 2 cut(s) 204, 332
TseFI GTSAC 1 cut(s) 118
TseI GCWGC 1 cut(s) 26
Tsp45I GTSAC 1 cut(s) 118
TspDTI ATGAA 2 cut(s) 312, 405
TspGWI ACGGA 1 cut(s) 272
VpaK11BI GGWCC 1 cut(s) 94
XapI RAATTY 2 cut(s) 381, 393
XmnI GAANNNNTTC 1 cut(s) 63
XspI CTAG 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.