Prupe.1G351900_v2.0.a1

RNA splicing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0002800
Physical Location & Seq
Forward (+)
32714605 .. 32718586
3982 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G351900.1

Sequence Viewer

Length: 1005 bp
ATGGCTTTCGCTTCCGCGACTTGCTTTTCTTCCCAACTGCAAGTGCTTCTTCCCCGCGGCCCCTCAAAGAGTTCCCCATTCGTATTTCCTTCTTATAATACTCGTCGTGTCACAATTACGTTCAGACCTCTCAGTCTGACACTGAGAGCACGCAGACCCTTATGCGTTCTATCAGCGGCGGCGAAGAGTAATTCGGGTTCGAATTCCAGTGTTAACAAAACCAGTAAAGAAGAAGAAGCAGTTGAAGAGGTGGAAGAGGATCTGCCATGGATTCAGGAGAAAGCCTTGGACCTCGTGGAGTTCACGGGCTCCGTATCACAGGCCATTCCTGGACCCAGAGTGGGCACCAGCTCTCTCCCTTGGATTCTGGCTCTTCCTCTGGCCTATGCCGGTCTCACTTTCGTCGTTGCCTTTGTCAAGACCGTTAAAAAGTTTTCTTCCCCTCGACAAAAACGCAAGAGACTGGTCAATAAAAATGCTATGCTATGTAAATCGATAGACGACTTGTTTCAAAGTGGCGCAGATCAACCCAAACCTGATGCTTTGAACCAACTTGTGCAGAAGACTGGTTTTGGCATGGAGGATATTTTGCGAAAGTACATTCGCTATACTTTGAATGAAAAACCGTTCAACCCAGACGTGGTTTCCAACTTAATTCAGCTCAGAAAAGCTTCCATGTTCGATGACTCTCAGGTTGCTGAAATTCTGAATGAAATTTCAAGAAGAATTGTACGAGACAAAGGCCCAGTTGTAATGGATATTTCAGGCTACACTGAAAGGGGTTTCAAGAGAAAACTAGCTGTTCAAGCCCTTTTTGGAAAGGTTTTCTATCTGTCAGAGCTGCCAGAGTTCTGTTCGAGGGATAGCTCCTTAATTGTCAAAGAAATATTTGGTGTTACTGATGAAGATGCAGACAAATTACGGATACATGCGATCTCTGAATCTGGGGATATGGATTCCTTGGAAAAGATGGTTGATGCTTCAGATTCAGATGAATCTGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

335

Amino Acids

37.08

Weight (kDa)

8.54

Isoelectric Point (pI)

51.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 96
AasI GACNNNNNNGTC 1 cut(s) 132
AccB1I GGYRCC 1 cut(s) 344
AccII CGCG 2 cut(s) 17, 57
AciI CCGC 5 cut(s) 15, 55, 57, 176, 179
AclWI GGATC 1 cut(s) 267
AcsI RAATTY 3 cut(s) 202, 702, 714
AcuI CTGAAG 1 cut(s) 966
AfaI GTAC 2 cut(s) 599, 732
AfiI CCNNNNNNNGG 2 cut(s) 341, 640
AgsI TTSAA 8 cut(s) 245, 512, 547, 616, 631, 720, 787, 806
AjiI CACGTC 1 cut(s) 640
AjnI CCWGG 1 cut(s) 328
AluBI AGCT 6 cut(s) 351, 661, 671, 800, 841, 867
AluI AGCT 6 cut(s) 351, 661, 671, 800, 841, 867
Alw21I GWGCWC 1 cut(s) 151
Alw26I GTCTC 3 cut(s) 398, 454, 729
AlwI GGATC 1 cut(s) 267
AoxI GGCC 4 cut(s) 58, 321, 381, 742
ApeKI GCWGC 1 cut(s) 841
ApoI RAATTY 3 cut(s) 202, 702, 714
Asp700I GAANNNNTTC 1 cut(s) 670
AspLEI GCGC 1 cut(s) 521
AspS9I GGNCC 4 cut(s) 59, 289, 332, 743
AsuII TTCGAA 1 cut(s) 200
AvaII GGWCC 2 cut(s) 289, 332
BaeGI GKGCMC 1 cut(s) 347
BanI GGYRCC 1 cut(s) 344
BanII GRGCYC 1 cut(s) 311
BauI CACGAG 1 cut(s) 293
BbsI GAAGAC 1 cut(s) 569
Bbv12I GWGCWC 1 cut(s) 151
BbvI GCAGC 1 cut(s) 828
BccI CCATC 1 cut(s) 964
BciT130I CCWGG 1 cut(s) 330
BciVI GTATCC 1 cut(s) 918
BcoDI GTCTC 3 cut(s) 398, 454, 729
BfaI CTAG 2 cut(s) 797, 1003
BfuI GTATCC 1 cut(s) 918
BisI GCNGC 4 cut(s) 58, 177, 180, 842
BlsI GCNGC 4 cut(s) 59, 178, 181, 843
Bme1390I CCNGG 1 cut(s) 330
Bme18I GGWCC 2 cut(s) 289, 332
BmgBI CACGTC 1 cut(s) 640
BmgT120I GGNCC 4 cut(s) 59, 289, 332, 743
BmiI GGNNCC 4 cut(s) 61, 310, 334, 346
BmrFI CCNGG 1 cut(s) 330
BmrI ACTGGG 1 cut(s) 740
BmsI GCATC 3 cut(s) 529, 898, 967
BmuI ACTGGG 1 cut(s) 740
BpiI GAAGAC 1 cut(s) 569
Bpu14I TTCGAA 1 cut(s) 200
Bsa29I ATCGAT 1 cut(s) 494
BsaI GGTCTC 1 cut(s) 398
BsaJI CCNNGG 5 cut(s) 55, 266, 285, 359, 960
Bsc4I CCNNNNNNNGG 2 cut(s) 341, 640
Bse118I RCCGGY 1 cut(s) 389
Bse1I ACTGG 5 cut(s) 207, 222, 468, 571, 746
BseBI CCWGG 1 cut(s) 330
BseCI ATCGAT 1 cut(s) 494
BseDI CCNNGG 5 cut(s) 55, 266, 285, 359, 960
BseLI CCNNNNNNNGG 2 cut(s) 341, 640
BseMII CTCAG 4 cut(s) 134, 145, 676, 704
BseNI ACTGG 5 cut(s) 207, 222, 468, 571, 746
BseSI GKGCMC 1 cut(s) 347
BseXI GCAGC 1 cut(s) 828
BsgI GTGCAG 1 cut(s) 578
Bsh1236I CGCG 2 cut(s) 17, 57
BshFI GGCC 4 cut(s) 60, 323, 383, 744
BshNI GGYRCC 1 cut(s) 344
BshVI ATCGAT 1 cut(s) 494
BsiHKAI GWGCWC 1 cut(s) 151
BsiSI CCGG 1 cut(s) 390
BslI CCNNNNNNNGG 2 cut(s) 341, 640
BsmAI GTCTC 3 cut(s) 398, 454, 729
BsnI GGCC 4 cut(s) 60, 323, 383, 744
Bso31I GGTCTC 1 cut(s) 398
Bsp119I TTCGAA 1 cut(s) 200
Bsp1286I GDGCHC 3 cut(s) 151, 311, 347
Bsp143I GATC 3 cut(s) 259, 523, 933
Bsp19I CCATGG 1 cut(s) 266
BspACI CCGC 5 cut(s) 15, 55, 57, 176, 179
BspANI GGCC 4 cut(s) 60, 323, 383, 744
BspCNI CTCAG 4 cut(s) 135, 144, 675, 703
BspDI ATCGAT 1 cut(s) 494
BspFNI CGCG 2 cut(s) 17, 57
BspLI GGNNCC 4 cut(s) 61, 310, 334, 346
BspPI GGATC 1 cut(s) 267
BspQI GCTCTTC 1 cut(s) 378
BspT104I TTCGAA 1 cut(s) 200
BspT107I GGYRCC 1 cut(s) 344
BspTNI GGTCTC 1 cut(s) 398
BsrFI RCCGGY 1 cut(s) 389
BsrI ACTGG 5 cut(s) 207, 222, 468, 571, 746
BssAI RCCGGY 1 cut(s) 389
BssECI CCNNGG 5 cut(s) 55, 266, 285, 359, 960
BssMI GATC 3 cut(s) 259, 523, 933
BssSI CACGAG 1 cut(s) 293
BssT1I CCWWGG 4 cut(s) 266, 285, 359, 960
Bst2BI CACGAG 1 cut(s) 293
Bst2UI CCWGG 1 cut(s) 330
Bst4CI ACNGT 2 cut(s) 424, 627
Bst6I CTCTTC 4 cut(s) 179, 240, 249, 378
BstBI TTCGAA 1 cut(s) 200
BstC8I GCNNGC 1 cut(s) 151
BstDEI CTNAG 4 cut(s) 131, 143, 662, 690
BstDSI CCRYGG 2 cut(s) 55, 266
BstFNI CGCG 2 cut(s) 17, 57
BstHHI GCGC 1 cut(s) 521
BstKTI GATC 3 cut(s) 262, 526, 936
BstMAI GTCTC 3 cut(s) 398, 454, 729
BstMBI GATC 3 cut(s) 259, 523, 933
BstMWI GCNNNNNNNGC 1 cut(s) 806
BstNI CCWGG 1 cut(s) 330
BstNSI RCATGY 1 cut(s) 932
BstSCI CCNGG 1 cut(s) 328
BstSLI GKGCMC 1 cut(s) 347
BstUI CGCG 2 cut(s) 17, 57
BstV1I GCAGC 1 cut(s) 828
BstV2I GAAGAC 1 cut(s) 569
BstX2I RGATCY 1 cut(s) 259
BstYI RGATCY 1 cut(s) 259
Bsu15I ATCGAT 1 cut(s) 494
BsuI GTATCC 1 cut(s) 918
BsuRI GGCC 4 cut(s) 60, 323, 383, 744
BsuTUI ATCGAT 1 cut(s) 494
BtgI CCRYGG 2 cut(s) 55, 266
BtrI CACGTC 1 cut(s) 640
BtsIMutI CAGTG 3 cut(s) 140, 214, 771
Cac8I GCNNGC 1 cut(s) 151
CfoI GCGC 1 cut(s) 521
Cfr10I RCCGGY 1 cut(s) 389
Cfr13I GGNCC 4 cut(s) 59, 289, 332, 743
Cfr42I CCGCGG 1 cut(s) 58
ClaI ATCGAT 1 cut(s) 494
Csp6I GTAC 2 cut(s) 598, 731
CviAII CATG 4 cut(s) 267, 577, 676, 929
CviQI GTAC 2 cut(s) 598, 731
DdeI CTNAG 4 cut(s) 131, 143, 662, 690
DpnI GATC 3 cut(s) 261, 525, 935
DpnII GATC 3 cut(s) 259, 523, 933
DrdI GACNNNNNNGTC 1 cut(s) 132
DseDI GACNNNNNNGTC 1 cut(s) 132
Eam1104I CTCTTC 4 cut(s) 179, 240, 249, 378
EarI CTCTTC 4 cut(s) 179, 240, 249, 378
Eco130I CCWWGG 4 cut(s) 266, 285, 359, 960
Eco24I GRGCYC 1 cut(s) 311
Eco31I GGTCTC 1 cut(s) 398
Eco47I GGWCC 2 cut(s) 289, 332
Eco57I CTGAAG 1 cut(s) 966
EcoRI GAATTC 1 cut(s) 202
EcoRII CCWGG 1 cut(s) 328
EcoT14I CCWWGG 4 cut(s) 266, 285, 359, 960
EcoT38I GRGCYC 1 cut(s) 311
ErhI CCWWGG 4 cut(s) 266, 285, 359, 960
FaeI CATG 4 cut(s) 270, 580, 679, 932
FalI AAGNNNNNCTT 2 cut(s) 33, 65
FatI CATG 4 cut(s) 266, 576, 675, 928
FauI CCCGC 1 cut(s) 62
Fnu4HI GCNGC 4 cut(s) 58, 177, 180, 842
FriOI GRGCYC 1 cut(s) 311
Fsp4HI GCNGC 4 cut(s) 58, 177, 180, 842
FspBI CTAG 2 cut(s) 797, 1003
GlaI GCGC 1 cut(s) 520
GluI GCNGC 4 cut(s) 58, 177, 180, 842
HaeIII GGCC 4 cut(s) 60, 323, 383, 744
HapII CCGG 1 cut(s) 390
HhaI GCGC 1 cut(s) 521
Hin1II CATG 4 cut(s) 270, 580, 679, 932
Hin6I GCGC 1 cut(s) 519
HinP1I GCGC 1 cut(s) 519
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HindIII AAGCTT 1 cut(s) 669
HinfI GANTC 7 cut(s) 271, 364, 686, 941, 956, 986, 995
HpaI GTTAAC 1 cut(s) 214
HpaII CCGG 1 cut(s) 390
Hpy166II GTNNAC 2 cut(s) 214, 303
Hpy188I TCNGA 8 cut(s) 125, 138, 665, 708, 838, 940, 985, 991
Hpy188III TCNNGA 4 cut(s) 275, 418, 720, 787
Hpy8I GTNNAC 2 cut(s) 214, 303
Hpy99I CGWCG 2 cut(s) 108, 407
HpyAV CCTTC 1 cut(s) 99
HpyCH4III ACNGT 2 cut(s) 424, 627
HpyCH4IV ACGT 2 cut(s) 119, 639
HpyCH4V TGCA 3 cut(s) 40, 559, 911
HpyF10VI GCNNNNNNNGC 1 cut(s) 806
HpyF3I CTNAG 4 cut(s) 131, 143, 662, 690
HpySE526I ACGT 2 cut(s) 119, 639
Hsp92II CATG 4 cut(s) 270, 580, 679, 932
HspAI GCGC 1 cut(s) 519
KspAI GTTAAC 1 cut(s) 214
KspI CCGCGG 1 cut(s) 58
Kzo9I GATC 3 cut(s) 259, 523, 933
LguI GCTCTTC 1 cut(s) 378
LmnI GCTCC 2 cut(s) 314, 872
Lsp1109I GCAGC 1 cut(s) 828
LweI GCATC 3 cut(s) 529, 898, 967
MaeI CTAG 2 cut(s) 797, 1003
MaeII ACGT 2 cut(s) 119, 639
MaeIII GTNAC 2 cut(s) 109, 895
MalI GATC 3 cut(s) 261, 525, 935
MboI GATC 3 cut(s) 259, 523, 933
MflI RGATCY 1 cut(s) 259
MhlI GDGCHC 3 cut(s) 151, 311, 347
MluCI AATT 9 cut(s) 114, 190, 202, 654, 702, 714, 726, 873, 917
MlyI GAGTC 1 cut(s) 680
MmeI TCCRAC 1 cut(s) 672
MnlI CCTC 9 cut(s) 73, 138, 241, 250, 302, 387, 453, 574, 852
MroXI GAANNNNTTC 1 cut(s) 670
MseI TTAA 4 cut(s) 213, 426, 653, 872
MspA1I CMGCKG 2 cut(s) 57, 176
MspI CCGG 1 cut(s) 390
MspR9I CCNGG 1 cut(s) 330
MvaI CCWGG 1 cut(s) 330
MvnI CGCG 2 cut(s) 17, 57
MwoI GCNNNNNNNGC 1 cut(s) 806
NcoI CCATGG 1 cut(s) 266
NdeII GATC 3 cut(s) 259, 523, 933
NlaIII CATG 4 cut(s) 270, 580, 679, 932
NlaIV GGNNCC 4 cut(s) 61, 310, 334, 346
NmuCI GTSAC 1 cut(s) 109
NspI RCATGY 1 cut(s) 932
NspV TTCGAA 1 cut(s) 200
PciSI GCTCTTC 1 cut(s) 378
PdmI GAANNNNTTC 1 cut(s) 670
PfeI GAWTC 6 cut(s) 271, 364, 941, 956, 986, 995
PfoI TCCNGGA 1 cut(s) 328
PkrI GCNGC 4 cut(s) 59, 178, 181, 843
PleI GAGTC 1 cut(s) 680
PpsI GAGTC 1 cut(s) 680
PsiI TTATAA 1 cut(s) 96
Psp6I CCWGG 1 cut(s) 328
PspGI CCWGG 1 cut(s) 328
PspN4I GGNNCC 4 cut(s) 61, 310, 334, 346
PspPI GGNCC 4 cut(s) 59, 289, 332, 743
PsrI GAACNNNNNNTAC 2 cut(s) 181, 213
PsuI RGATCY 1 cut(s) 259
RsaI GTAC 2 cut(s) 599, 732
RsaNI GTAC 2 cut(s) 598, 731
SacII CCGCGG 1 cut(s) 58
SapI GCTCTTC 1 cut(s) 378
SaqAI TTAA 4 cut(s) 213, 426, 653, 872
SatI GCNGC 4 cut(s) 58, 177, 180, 842
Sau3AI GATC 3 cut(s) 259, 523, 933
Sau96I GGNCC 4 cut(s) 59, 289, 332, 743
SchI GAGTC 1 cut(s) 680
ScrFI CCNGG 1 cut(s) 330
SduI GDGCHC 3 cut(s) 151, 311, 347
SfaNI GCATC 3 cut(s) 529, 898, 967
Sfr303I CCGCGG 1 cut(s) 58
SfuI TTCGAA 1 cut(s) 200
SgrBI CCGCGG 1 cut(s) 58
SinI GGWCC 2 cut(s) 289, 332
Sse9I AATT 9 cut(s) 114, 190, 202, 654, 702, 714, 726, 873, 917
SsiI CCGC 5 cut(s) 15, 55, 57, 176, 179
SspI AATATT 1 cut(s) 888
SspMI CTAG 2 cut(s) 797, 1003
StyD4I CCNGG 1 cut(s) 328
StyI CCWWGG 4 cut(s) 266, 285, 359, 960
TaaI ACNGT 2 cut(s) 424, 627
TaiI ACGT 2 cut(s) 122, 642
TaqI TCGA 5 cut(s) 200, 445, 494, 681, 857
TasI AATT 9 cut(s) 114, 190, 202, 654, 702, 714, 726, 873, 917
TatI WGTACW 1 cut(s) 597
TauI GCSGC 3 cut(s) 60, 179, 182
TfiI GAWTC 6 cut(s) 271, 364, 941, 956, 986, 995
Tru1I TTAA 4 cut(s) 213, 426, 653, 872
Tru9I TTAA 4 cut(s) 213, 426, 653, 872
TscAI CASTG 3 cut(s) 147, 214, 778
TseFI GTSAC 1 cut(s) 109
TseI GCWGC 1 cut(s) 841
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 3 cut(s) 633, 726, 918
TspGWI ACGGA 2 cut(s) 301, 937
TspRI CASTG 3 cut(s) 147, 214, 778
VpaK11BI GGWCC 2 cut(s) 289, 332
XapI RAATTY 3 cut(s) 202, 702, 714
XceI RCATGY 1 cut(s) 932
XmnI GAANNNNTTC 1 cut(s) 670
XspI CTAG 2 cut(s) 797, 1003
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.