Rroxscaffold_5G00387570

RNA splicing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0002800
Physical Location & Seq
Forward (+)
66159080 .. 66162624
3545 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00387570.1

Sequence Viewer

Length: 1035 bp
ATGTCAAAGAGGCCCAGAGTGGTAAACTTGTTGTTCATGGCTTCTGCTTTGGCTACTTCCTTTTCTTCACAATTGCTCCCTCGCGCCCCACCCAAAGGTCTCCCTTTGCTTCGTCCCATAATCGCACCTGTGTCTGTAGCTGTGAGAGTCCGAGCTAGCAGGCCGTTATCGGCGGCGGCGGCGGTGAAGAGTAATTCCAATCCTCCGCCCCCGACGACGAGCCCTAACAAAAGCAGTAAAGCAGAAGAAGAAGAAGAAGGCGTTGAAGAAGTGGAGGAGGATCTACCCTGGATTCAAGAGAAGGCCTTGGACCTGGTGGAGTTCACCGGCTCTGTCACGCAGGCCATTCCTGGACCCAGAGTTGGCACCAGCTCTCTCCCTTGGATTTTGGCTCTTCCTCTCGCTTATGCCGGTCTCACTTTTGTCATCGCCGTTGTCAAGACCGTCAAAAAGTTCTCTTCCCCTCGACATAAACGCAAGAAACTGGTCAATAAAAATGCTATGCTATGCAAATCAATAGACGAAATGTTTCAGAATGGCTCCGACCAAATCACGCCTGATGCCCTGAAACAACTCGTGCAAAAGACAGGTTTTGGCATGGAGGAGATTTTGCGCAAGTACATCCGTTATACTTTGAATGAAAAGCCATTCAACCCAGACATGGTTTCCAATTTAATTCAGCTCAGGAAAGCTTCTTTGTTCGATGATTCTCAGGTGGCTGAAATTCTAAATGAAATTTCAAGAAGAATTGTGCGAGACAAAGGCCCAGTTGTAATGGATATGGCAGGTTATACTGAACGGGGTTTCAAAAGAAAATTAGCCGTTCAAGCCCTATTTGGAAAGGTGTTCTATCTGTCAGAGCTCCCAGAGTTCTGTTCGAGGGATAGCTCTTTAATTGTCAAAGAAATATTTGGTGTTACAGATGAAGATGCAGACAGATTACGGATACATACAGCCTCTGAAGCTGGGGATATAGAATCACTACAAAACAAGTTTGATTGTTCCTTCTTAGAGTTATCTTCGGATTGGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

344

Amino Acids

38.19

Weight (kDa)

8.81

Isoelectric Point (pI)

53.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARMH5 PF22915 196 - 287 1.6e-40 Armadillo-like helical domain-containing protein 5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 614
Acc36I ACCTGC 1 cut(s) 776
AccB1I GGYRCC 1 cut(s) 365
AccII CGCG 1 cut(s) 84
AciI CCGC 5 cut(s) 173, 176, 179, 182, 206
AclWI GGATC 1 cut(s) 288
AcsI RAATTY 2 cut(s) 723, 735
AcuI CTGAAG 1 cut(s) 981
AfaI GTAC 1 cut(s) 620
AfiI CCNNNNNNNGG 3 cut(s) 95, 362, 661
AgsI TTSAA 7 cut(s) 266, 296, 637, 652, 741, 808, 827
AjnI CCWGG 3 cut(s) 287, 312, 349
AluBI AGCT 8 cut(s) 140, 155, 372, 682, 692, 862, 888, 965
AluI AGCT 8 cut(s) 140, 155, 372, 682, 692, 862, 888, 965
Alw21I GWGCWC 1 cut(s) 864
Alw26I GTCTC 3 cut(s) 104, 419, 750
AlwI GGATC 1 cut(s) 288
AlwNI CAGNNNCTG 1 cut(s) 959
AoxI GGCC 5 cut(s) 11, 161, 303, 342, 763
ApoI RAATTY 2 cut(s) 723, 735
Asp700I GAANNNNTTC 1 cut(s) 528
AspLEI GCGC 2 cut(s) 86, 615
AspS9I GGNCC 4 cut(s) 12, 310, 353, 764
AsuHPI GGTGA 2 cut(s) 196, 316
AsuNHI GCTAGC 1 cut(s) 155
AvaII GGWCC 2 cut(s) 310, 353
BanI GGYRCC 1 cut(s) 365
BanII GRGCYC 2 cut(s) 224, 864
BauI CACGAG 1 cut(s) 575
Bbv12I GWGCWC 1 cut(s) 864
BceAI ACGGC 3 cut(s) 148, 416, 806
BciT130I CCWGG 3 cut(s) 289, 314, 351
BciVI GTATCC 1 cut(s) 939
BcoDI GTCTC 3 cut(s) 104, 419, 750
BfaI CTAG 2 cut(s) 156, 1033
BfmI CTRYAG 1 cut(s) 135
BfuAI ACCTGC 1 cut(s) 776
BfuI GTATCC 1 cut(s) 939
BisI GCNGC 3 cut(s) 174, 177, 180
BlsI GCNGC 3 cut(s) 175, 178, 181
Bme1390I CCNGG 3 cut(s) 289, 314, 351
Bme18I GGWCC 2 cut(s) 310, 353
BmgT120I GGNCC 4 cut(s) 12, 310, 353, 764
BmiI GGNNCC 3 cut(s) 355, 367, 541
BmrFI CCNGG 3 cut(s) 289, 314, 351
BmrI ACTGGG 1 cut(s) 761
BmsI GCATC 2 cut(s) 550, 919
BmtI GCTAGC 1 cut(s) 159
BmuI ACTGGG 1 cut(s) 761
Bpu10I CCTNAGC 1 cut(s) 683
BsaI GGTCTC 2 cut(s) 104, 419
BsaJI CCNNGG 3 cut(s) 287, 306, 380
BsaXI ACNNNNNCTCC 2 cut(s) 60, 90
Bsc4I CCNNNNNNNGG 3 cut(s) 95, 362, 661
Bse118I RCCGGY 2 cut(s) 326, 410
Bse1I ACTGG 2 cut(s) 489, 767
BseBI CCWGG 3 cut(s) 289, 314, 351
BseDI CCNNGG 3 cut(s) 287, 306, 380
BseGI GGATG 1 cut(s) 621
BseLI CCNNNNNNNGG 3 cut(s) 95, 362, 661
BseMII CTCAG 2 cut(s) 697, 725
BseNI ACTGG 2 cut(s) 489, 767
BseRI GAGGAG 2 cut(s) 290, 617
BseYI CCCAGC 1 cut(s) 965
Bsh1236I CGCG 1 cut(s) 84
BshFI GGCC 5 cut(s) 13, 163, 305, 344, 765
BshNI GGYRCC 1 cut(s) 365
BsiHKAI GWGCWC 1 cut(s) 864
BsiSI CCGG 2 cut(s) 327, 411
BslFI GGGAC 1 cut(s) 99
BslI CCNNNNNNNGG 3 cut(s) 95, 362, 661
BsmAI GTCTC 3 cut(s) 104, 419, 750
BsmFI GGGAC 1 cut(s) 99
BsnI GGCC 5 cut(s) 13, 163, 305, 344, 765
Bso31I GGTCTC 2 cut(s) 104, 419
Bsp1286I GDGCHC 2 cut(s) 224, 864
Bsp143I GATC 1 cut(s) 280
BspACI CCGC 5 cut(s) 173, 176, 179, 182, 206
BspANI GGCC 5 cut(s) 13, 163, 305, 344, 765
BspCNI CTCAG 2 cut(s) 696, 724
BspFNI CGCG 1 cut(s) 84
BspLI GGNNCC 3 cut(s) 355, 367, 541
BspMI ACCTGC 1 cut(s) 776
BspOI GCTAGC 1 cut(s) 159
BspPI GGATC 1 cut(s) 288
BspQI GCTCTTC 1 cut(s) 399
BspT107I GGYRCC 1 cut(s) 365
BspTNI GGTCTC 2 cut(s) 104, 419
BsrFI RCCGGY 2 cut(s) 326, 410
BsrI ACTGG 2 cut(s) 489, 767
BssAI RCCGGY 2 cut(s) 326, 410
BssECI CCNNGG 3 cut(s) 287, 306, 380
BssMI GATC 1 cut(s) 280
BssSI CACGAG 1 cut(s) 575
BssT1I CCWWGG 2 cut(s) 306, 380
Bst2BI CACGAG 1 cut(s) 575
Bst2UI CCWGG 3 cut(s) 289, 314, 351
Bst4CI ACNGT 1 cut(s) 445
Bst6I CTCTTC 3 cut(s) 182, 399, 463
BstC8I GCNNGC 3 cut(s) 157, 161, 342
BstDEI CTNAG 3 cut(s) 683, 711, 1009
BstF5I GGATG 1 cut(s) 621
BstFNI CGCG 1 cut(s) 84
BstHHI GCGC 2 cut(s) 86, 615
BstKTI GATC 1 cut(s) 283
BstMAI GTCTC 3 cut(s) 104, 419, 750
BstMBI GATC 1 cut(s) 280
BstMWI GCNNNNNNNGC 3 cut(s) 179, 827, 962
BstNI CCWGG 3 cut(s) 289, 314, 351
BstSCI CCNGG 3 cut(s) 287, 312, 349
BstSFI CTRYAG 1 cut(s) 135
BstUI CGCG 1 cut(s) 84
BstX2I RGATCY 1 cut(s) 280
BstYI RGATCY 1 cut(s) 280
BsuI GTATCC 1 cut(s) 939
BsuRI GGCC 5 cut(s) 13, 163, 305, 344, 765
BtgZI GCGATG 1 cut(s) 412
BtsCI GGATG 1 cut(s) 621
BveI ACCTGC 1 cut(s) 776
Cac8I GCNNGC 3 cut(s) 157, 161, 342
CaiI CAGNNNCTG 1 cut(s) 959
CfoI GCGC 2 cut(s) 86, 615
Cfr10I RCCGGY 2 cut(s) 326, 410
Cfr13I GGNCC 4 cut(s) 12, 310, 353, 764
CsiI ACCWGGT 1 cut(s) 312
Csp6I GTAC 1 cut(s) 619
CviAII CATG 3 cut(s) 37, 598, 661
CviQI GTAC 1 cut(s) 619
DdeI CTNAG 3 cut(s) 683, 711, 1009
DpnI GATC 1 cut(s) 282
DpnII GATC 1 cut(s) 280
Eam1104I CTCTTC 3 cut(s) 182, 399, 463
EarI CTCTTC 3 cut(s) 182, 399, 463
EciI GGCGGA 1 cut(s) 195
Ecl136II GAGCTC 1 cut(s) 862
Eco130I CCWWGG 2 cut(s) 306, 380
Eco147I AGGCCT 1 cut(s) 305
Eco24I GRGCYC 2 cut(s) 224, 864
Eco31I GGTCTC 2 cut(s) 104, 419
Eco47I GGWCC 2 cut(s) 310, 353
Eco53kI GAGCTC 1 cut(s) 862
Eco57I CTGAAG 1 cut(s) 981
EcoICRI GAGCTC 1 cut(s) 862
EcoRII CCWGG 3 cut(s) 287, 312, 349
EcoT14I CCWWGG 2 cut(s) 306, 380
EcoT38I GRGCYC 2 cut(s) 224, 864
ErhI CCWWGG 2 cut(s) 306, 380
FaeI CATG 3 cut(s) 40, 601, 664
FaqI GGGAC 1 cut(s) 99
FatI CATG 3 cut(s) 36, 597, 660
Fnu4HI GCNGC 3 cut(s) 174, 177, 180
FokI GGATG 1 cut(s) 608
FriOI GRGCYC 2 cut(s) 224, 864
Fsp4HI GCNGC 3 cut(s) 174, 177, 180
FspBI CTAG 2 cut(s) 156, 1033
FspI TGCGCA 1 cut(s) 614
GlaI GCGC 2 cut(s) 85, 614
GluI GCNGC 3 cut(s) 174, 177, 180
GsaI CCCAGC 1 cut(s) 969
HaeIII GGCC 5 cut(s) 13, 163, 305, 344, 765
HapII CCGG 2 cut(s) 327, 411
HhaI GCGC 2 cut(s) 86, 615
Hin1II CATG 3 cut(s) 40, 601, 664
Hin6I GCGC 2 cut(s) 84, 613
HinP1I GCGC 2 cut(s) 84, 613
HindIII AAGCTT 1 cut(s) 690
HinfI GANTC 4 cut(s) 147, 292, 707, 977
HpaII CCGG 2 cut(s) 327, 411
HphI GGTGA 2 cut(s) 196, 316
Hpy166II GTNNAC 2 cut(s) 25, 324
Hpy188I TCNGA 6 cut(s) 152, 534, 544, 859, 961, 1024
Hpy188III TCNNGA 4 cut(s) 296, 439, 685, 741
Hpy8I GTNNAC 2 cut(s) 25, 324
Hpy99I CGWCG 2 cut(s) 217, 220
HpyAV CCTTC 3 cut(s) 251, 295, 1015
HpyCH4III ACNGT 1 cut(s) 445
HpyCH4V TGCA 3 cut(s) 510, 580, 932
HpyF10VI GCNNNNNNNGC 3 cut(s) 179, 827, 962
HpyF3I CTNAG 3 cut(s) 683, 711, 1009
Hsp92II CATG 3 cut(s) 40, 601, 664
HspAI GCGC 2 cut(s) 84, 613
Kzo9I GATC 1 cut(s) 280
LguI GCTCTTC 1 cut(s) 399
LmnI GCTCC 3 cut(s) 81, 545, 867
LweI GCATC 2 cut(s) 550, 919
MabI ACCWGGT 1 cut(s) 312
MaeI CTAG 2 cut(s) 156, 1033
MaeIII GTNAC 2 cut(s) 334, 916
MalI GATC 1 cut(s) 282
MboI GATC 1 cut(s) 280
MfeI CAATTG 1 cut(s) 71
MflI RGATCY 1 cut(s) 280
MhlI GDGCHC 2 cut(s) 224, 864
MluCI AATT 9 cut(s) 71, 193, 670, 675, 723, 735, 747, 815, 894
MlyI GAGTC 1 cut(s) 156
MmeI TCCRAC 1 cut(s) 567
MroXI GAANNNNTTC 1 cut(s) 528
MseI TTAA 2 cut(s) 674, 893
MspI CCGG 2 cut(s) 327, 411
MspR9I CCNGG 3 cut(s) 289, 314, 351
MunI CAATTG 1 cut(s) 71
MvaI CCWGG 3 cut(s) 289, 314, 351
MvnI CGCG 1 cut(s) 84
MwoI GCNNNNNNNGC 3 cut(s) 179, 827, 962
NdeII GATC 1 cut(s) 280
NheI GCTAGC 1 cut(s) 155
NlaIII CATG 3 cut(s) 40, 601, 664
NlaIV GGNNCC 3 cut(s) 355, 367, 541
NmuCI GTSAC 1 cut(s) 334
NsbI TGCGCA 1 cut(s) 614
PceI AGGCCT 1 cut(s) 305
PciSI GCTCTTC 1 cut(s) 399
PdmI GAANNNNTTC 1 cut(s) 528
PfeI GAWTC 3 cut(s) 292, 707, 977
PfoI TCCNGGA 1 cut(s) 349
PkrI GCNGC 3 cut(s) 175, 178, 181
PleI GAGTC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 155
Psp124BI GAGCTC 1 cut(s) 864
Psp6I CCWGG 3 cut(s) 287, 312, 349
PspFI CCCAGC 1 cut(s) 965
PspGI CCWGG 3 cut(s) 287, 312, 349
PspN4I GGNNCC 3 cut(s) 355, 367, 541
PspPI GGNCC 4 cut(s) 12, 310, 353, 764
PstNI CAGNNNCTG 1 cut(s) 959
PsuI RGATCY 1 cut(s) 280
RsaI GTAC 1 cut(s) 620
RsaNI GTAC 1 cut(s) 619
SacI GAGCTC 1 cut(s) 864
SapI GCTCTTC 1 cut(s) 399
SaqAI TTAA 2 cut(s) 674, 893
SatI GCNGC 3 cut(s) 174, 177, 180
Sau3AI GATC 1 cut(s) 280
Sau96I GGNCC 4 cut(s) 12, 310, 353, 764
SchI GAGTC 1 cut(s) 156
ScrFI CCNGG 3 cut(s) 289, 314, 351
SduI GDGCHC 2 cut(s) 224, 864
SexAI ACCWGGT 1 cut(s) 312
SfaNI GCATC 2 cut(s) 550, 919
SfcI CTRYAG 1 cut(s) 135
SinI GGWCC 2 cut(s) 310, 353
Sse9I AATT 9 cut(s) 71, 193, 670, 675, 723, 735, 747, 815, 894
SseBI AGGCCT 1 cut(s) 305
SsiI CCGC 5 cut(s) 173, 176, 179, 182, 206
SspI AATATT 1 cut(s) 909
SspMI CTAG 2 cut(s) 156, 1033
SstI GAGCTC 1 cut(s) 864
StuI AGGCCT 1 cut(s) 305
StyD4I CCNGG 3 cut(s) 287, 312, 349
StyI CCWWGG 2 cut(s) 306, 380
TaaI ACNGT 1 cut(s) 445
TaqI TCGA 3 cut(s) 466, 702, 878
TasI AATT 9 cut(s) 71, 193, 670, 675, 723, 735, 747, 815, 894
TatI WGTACW 1 cut(s) 618
TauI GCSGC 3 cut(s) 176, 179, 182
TfiI GAWTC 3 cut(s) 292, 707, 977
Tru1I TTAA 2 cut(s) 674, 893
Tru9I TTAA 2 cut(s) 674, 893
TseFI GTSAC 1 cut(s) 334
Tsp45I GTSAC 1 cut(s) 334
TspDTI ATGAA 4 cut(s) 25, 654, 747, 939
TspGWI ACGGA 2 cut(s) 614, 958
VpaK11BI GGWCC 2 cut(s) 310, 353
XapI RAATTY 2 cut(s) 723, 735
XmnI GAANNNNTTC 1 cut(s) 528
XspI CTAG 2 cut(s) 156, 1033
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.