Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002800

Physical Location & Seq

Genomic Coordinates Reverse (-)

48746596 .. 48750930

Gene Structure 4335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G025410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGCTTCTGCTTTGGCCACTTCCTTTGCTTCCGAATTGCTCCCTCGCGCCCCACCCAAAGGTCTCCCTTTACTTTGTCCCACAGTCACACATGTGTCTATAGCTGTGAGAGTCGGAGATAGCAGGCCGTTATCCGCTGTGGCGGCGGCGAAGAGTAATTCCAATCCTCCGCCGACGACGAGGAGCCCTAACAAAAGGAGTAAAGCAGCAGAAGAAGAAGAAGCCATTGAAGAAGTGGAAGAGGATCTACCCTGGATTCAAGAGAAGGCCTTGGACCTGGTAGATTTCACCGGCTCTGTCACGCAGGCCATTCCTGGACCCAGAGTTGGCACCAGCTCCCTCCCTTGGATTTTGGCTCTTCCTCTCGCTTATGCCGGTCTCAATTTTGTTATCGCCGTTGTCAAGACCGTCAAAAAGTTCTCTTCCCCTCGACATAAACGCAAGAAACTGAATGGCTTCGACCAAATCACGCCTGATGCCCTGAAACAACTCGTGCAAAATACAGGTTTTGGCATGGAGGAGATTTTGCGCAAGTACATCTGTTATACTTTGAATGAAAAGCCATTCAACCCAGACATGGTTTCCAATTTAATTCAGCTCAGGAAATTGCTGACTGCTTGTTTGCAACTTGCAGGCCCAGTTGTAATGGATATGGCAGGTTATACTGAACGGGGTTTTAAAAGAAAATTAGCCGTTCAAGCCCTATATGGAAAGGTGTTCTATCTGTCAGAGATTCACCACTCACGTGTGAGTTATTGTGAGAATTGCAATAGGATATTTAGTAGTTGCCTTGTGCGAGATTTAACGGCAGCGAGATATACGACAGTCAGCTCCGCATCAGACGACAGTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

284

Amino Acids

31.17

Weight (kDa)

9.07

Isoelectric Point (pI)

50.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARMH5	PF22915	168 - 204	1.2e-11	Armadillo-like helical domain-containing protein 5
ARMH5	PF22915	209 - 244	3.9e-09	Armadillo-like helical domain-containing protein 5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08540
fragaria_vesca	FvH4_4g37340
malus_domestica	MD13G1000800.v1.1 MD16G1004900.v1.1
prunus_persica	Prupe.1G351900_v2.0.a1
pyrus_communis	pycom13g00070
rosa_chinensis	RchiOBHm_Chr1g0316621 RchiOBHm_Chr3g0483721 RchiOBHm_Chr3g0483731 RchiOBHm_Chr4g0403031 RchiOBHm_Chr4g0447201 RchiOBHm_Chr6g0263291
rosa_laevigata	RLG00000005597
rosa_multiflora	Rmu_co8235609.1_g000001 Rmu_sc0000101.1_g000002 Rmu_sc0000310.1_g000018 Rmu_sc0001241.1_g000043 Rmu_ssc0000359.1_g000022
rosa_roxburghii	Rroxscaffold_5G00387570
rosa_rugosa	Rorug04G0379000
rosa_samantha	Rh1AG022300 Rh2BG461100 Rh2CG299400 Rh3AG256400 Rh4AG023400 Rh4AG023500 Rh4AG440200 Rh4BG449200 Rh4CG466200 Rh4DG447700 Rh5CG543000 Rh6AG123500 Rh6BG118500 Rh6CG116600 Rh6DG105200
rosa_wichuraiana	Rw1G002360 Rw4G001660 Rw4G037660 Rw6G025410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	530
Acc36I	ACCTGC	1 cut(s)	647
AccB1I	GGYRCC	1 cut(s)	329
AccII	CGCG	1 cut(s)	48
AciI	CCGC	5 cut(s)	135, 143, 146, 170, 834
AclWI	GGATC	1 cut(s)	252
AcoI	YGGCCR	1 cut(s)	15
AcvI	CACGTG	1 cut(s)	746
AfaI	GTAC	1 cut(s)	536
AfiI	CCNNNNNNNGG	4 cut(s)	59, 326, 345, 577
AflIII	ACRYGT	2 cut(s)	91, 745
AgsI	TTSAA	5 cut(s)	230, 260, 553, 568, 698
AjnI	CCWGG	3 cut(s)	251, 276, 313
AleI	CACNNNNGTG	2 cut(s)	92, 744
AluBI	AGCT	4 cut(s)	104, 336, 598, 831
AluI	AGCT	4 cut(s)	104, 336, 598, 831
Alw26I	GTCTC	2 cut(s)	68, 383
AlwI	GGATC	1 cut(s)	252
AoxI	GGCC	5 cut(s)	15, 125, 267, 306, 634
ApeKI	GCWGC	2 cut(s)	206, 809
ArsI	GACNNNNNNTTYG	2 cut(s)	604, 636
Asp700I	GAANNNNTTC	1 cut(s)	455
AspLEI	GCGC	2 cut(s)	50, 531
AspS9I	GGNCC	3 cut(s)	274, 317, 635
AsuHPI	GGTGA	2 cut(s)	280, 728
AvaII	GGWCC	2 cut(s)	274, 317
BalI	TGGCCA	1 cut(s)	17
BanI	GGYRCC	1 cut(s)	329
BanII	GRGCYC	1 cut(s)	188
BarI	GAAGNNNNNNTAC	2 cut(s)	231, 263
BauI	CACGAG	1 cut(s)	491
BbrPI	CACGTG	1 cut(s)	746
BbvI	GCAGC	2 cut(s)	218, 821
BceAI	ACGGC	4 cut(s)	112, 380, 677, 822
BciT130I	CCWGG	3 cut(s)	253, 278, 315
BcoDI	GTCTC	2 cut(s)	68, 383
BfmI	CTRYAG	1 cut(s)	99
BfuAI	ACCTGC	1 cut(s)	647
BisI	GCNGC	4 cut(s)	144, 147, 207, 810
BlsI	GCNGC	4 cut(s)	145, 148, 208, 811
Bme1390I	CCNGG	3 cut(s)	253, 278, 315
Bme18I	GGWCC	2 cut(s)	274, 317
BmgT120I	GGNCC	3 cut(s)	274, 317, 635
BmiI	GGNNCC	3 cut(s)	185, 319, 331
BmrFI	CCNGG	3 cut(s)	253, 278, 315
BmrI	ACTGGG	1 cut(s)	632
BmsI	GCATC	2 cut(s)	466, 845
BmuI	ACTGGG	1 cut(s)	632
Bpu10I	CCTNAGC	1 cut(s)	599
BsaAI	YACGTR	1 cut(s)	746
BsaI	GGTCTC	2 cut(s)	68, 383
BsaJI	CCNNGG	3 cut(s)	251, 270, 344
Bsc4I	CCNNNNNNNGG	4 cut(s)	59, 326, 345, 577
Bse118I	RCCGGY	2 cut(s)	290, 374
Bse1I	ACTGG	1 cut(s)	638
BseBI	CCWGG	3 cut(s)	253, 278, 315
BseDI	CCNNGG	3 cut(s)	251, 270, 344
BseLI	CCNNNNNNNGG	4 cut(s)	59, 326, 345, 577
BseMII	CTCAG	1 cut(s)	613
BseNI	ACTGG	1 cut(s)	638
BseRI	GAGGAG	2 cut(s)	196, 533
BseXI	GCAGC	2 cut(s)	218, 821
Bsh1236I	CGCG	1 cut(s)	48
BshFI	GGCC	5 cut(s)	17, 127, 269, 308, 636
BshNI	GGYRCC	1 cut(s)	329
BsiSI	CCGG	2 cut(s)	291, 375
BslFI	GGGAC	1 cut(s)	63
BslI	CCNNNNNNNGG	4 cut(s)	59, 326, 345, 577
BsmAI	GTCTC	2 cut(s)	68, 383
BsmFI	GGGAC	1 cut(s)	63
BsnI	GGCC	5 cut(s)	17, 127, 269, 308, 636
Bso31I	GGTCTC	2 cut(s)	68, 383
Bsp1286I	GDGCHC	1 cut(s)	188
Bsp143I	GATC	1 cut(s)	244
BspACI	CCGC	5 cut(s)	135, 143, 146, 170, 834
BspANI	GGCC	5 cut(s)	17, 127, 269, 308, 636
BspCNI	CTCAG	1 cut(s)	612
BspFNI	CGCG	1 cut(s)	48
BspLI	GGNNCC	3 cut(s)	185, 319, 331
BspMI	ACCTGC	1 cut(s)	647
BspPI	GGATC	1 cut(s)	252
BspQI	GCTCTTC	1 cut(s)	363
BspT107I	GGYRCC	1 cut(s)	329
BspTNI	GGTCTC	2 cut(s)	68, 383
BsrFI	RCCGGY	2 cut(s)	290, 374
BsrI	ACTGG	1 cut(s)	638
BssAI	RCCGGY	2 cut(s)	290, 374
BssECI	CCNNGG	3 cut(s)	251, 270, 344
BssMI	GATC	1 cut(s)	244
BssSI	CACGAG	1 cut(s)	491
BssT1I	CCWWGG	2 cut(s)	270, 344
Bst2BI	CACGAG	1 cut(s)	491
Bst2UI	CCWGG	3 cut(s)	253, 278, 315
Bst4CI	ACNGT	4 cut(s)	85, 409, 826, 848
Bst6I	CTCTTC	4 cut(s)	146, 234, 363, 427
BstBAI	YACGTR	1 cut(s)	746
BstC8I	GCNNGC	3 cut(s)	125, 306, 634
BstDEI	CTNAG	1 cut(s)	599
BstFNI	CGCG	1 cut(s)	48
BstHHI	GCGC	2 cut(s)	50, 531
BstKTI	GATC	1 cut(s)	247
BstMAI	GTCTC	2 cut(s)	68, 383
BstMBI	GATC	1 cut(s)	244
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 698
BstNI	CCWGG	3 cut(s)	253, 278, 315
BstNSI	RCATGY	1 cut(s)	95
BstSCI	CCNGG	3 cut(s)	251, 276, 313
BstSFI	CTRYAG	1 cut(s)	99
BstUI	CGCG	1 cut(s)	48
BstV1I	GCAGC	2 cut(s)	218, 821
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
BsuRI	GGCC	5 cut(s)	17, 127, 269, 308, 636
BveI	ACCTGC	1 cut(s)	647
Cac8I	GCNNGC	3 cut(s)	125, 306, 634
CfoI	GCGC	2 cut(s)	50, 531
Cfr10I	RCCGGY	2 cut(s)	290, 374
Cfr13I	GGNCC	3 cut(s)	274, 317, 635
CsiI	ACCWGGT	1 cut(s)	276
Csp6I	GTAC	1 cut(s)	535
CspCI	CAANNNNNGTGG	2 cut(s)	7, 42
CviAII	CATG	3 cut(s)	92, 514, 577
CviQI	GTAC	1 cut(s)	535
DdeI	CTNAG	1 cut(s)	599
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
DraI	TTTAAA	1 cut(s)	679
EaeI	YGGCCR	1 cut(s)	15
Eam1104I	CTCTTC	4 cut(s)	146, 234, 363, 427
EarI	CTCTTC	4 cut(s)	146, 234, 363, 427
EciI	GGCGGA	1 cut(s)	159
Eco130I	CCWWGG	2 cut(s)	270, 344
Eco147I	AGGCCT	1 cut(s)	269
Eco24I	GRGCYC	1 cut(s)	188
Eco31I	GGTCTC	2 cut(s)	68, 383
Eco47I	GGWCC	2 cut(s)	274, 317
Eco72I	CACGTG	1 cut(s)	746
EcoRII	CCWGG	3 cut(s)	251, 276, 313
EcoT14I	CCWWGG	2 cut(s)	270, 344
EcoT38I	GRGCYC	1 cut(s)	188
ErhI	CCWWGG	2 cut(s)	270, 344
FaeI	CATG	3 cut(s)	95, 517, 580
FaqI	GGGAC	1 cut(s)	63
FatI	CATG	3 cut(s)	91, 513, 576
Fnu4HI	GCNGC	4 cut(s)	144, 147, 207, 810
FriOI	GRGCYC	1 cut(s)	188
Fsp4HI	GCNGC	4 cut(s)	144, 147, 207, 810
FspI	TGCGCA	1 cut(s)	530
GlaI	GCGC	2 cut(s)	49, 530
GluI	GCNGC	4 cut(s)	144, 147, 207, 810
HaeIII	GGCC	5 cut(s)	17, 127, 269, 308, 636
HapII	CCGG	2 cut(s)	291, 375
HhaI	GCGC	2 cut(s)	50, 531
Hin1II	CATG	3 cut(s)	95, 517, 580
Hin6I	GCGC	2 cut(s)	48, 529
HinP1I	GCGC	2 cut(s)	48, 529
HinfI	GANTC	3 cut(s)	111, 256, 733
HpaII	CCGG	2 cut(s)	291, 375
HphI	GGTGA	2 cut(s)	280, 728
Hpy188I	TCNGA	4 cut(s)	34, 116, 730, 841
Hpy188III	TCNNGA	3 cut(s)	260, 403, 601
Hpy99I	CGWCG	2 cut(s)	178, 181
HpyAV	CCTTC	1 cut(s)	259
HpyCH4III	ACNGT	4 cut(s)	85, 409, 826, 848
HpyCH4IV	ACGT	1 cut(s)	745
HpyCH4V	TGCA	4 cut(s)	496, 625, 632, 768
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 698
HpyF3I	CTNAG	1 cut(s)	599
HpySE526I	ACGT	1 cut(s)	745
Hsp92II	CATG	3 cut(s)	95, 517, 580
HspAI	GCGC	2 cut(s)	48, 529
Kzo9I	GATC	1 cut(s)	244
LguI	GCTCTTC	1 cut(s)	363
LmnI	GCTCC	4 cut(s)	45, 183, 341, 836
Lsp1109I	GCAGC	2 cut(s)	218, 821
LweI	GCATC	2 cut(s)	466, 845
MabI	ACCWGGT	1 cut(s)	276
MaeII	ACGT	1 cut(s)	745
MaeIII	GTNAC	2 cut(s)	85, 298
MalI	GATC	1 cut(s)	246
MboI	GATC	1 cut(s)	244
MboII	GAAGA	8 cut(s)	163, 224, 227, 230, 242, 251, 350, 414
MflI	RGATCY	1 cut(s)	244
MhlI	GDGCHC	1 cut(s)	188
MlsI	TGGCCA	1 cut(s)	17
MluCI	AATT	8 cut(s)	35, 157, 382, 586, 591, 605, 686, 763
MluNI	TGGCCA	1 cut(s)	17
MlyI	GAGTC	1 cut(s)	120
MmeI	TCCRAC	1 cut(s)	94
MnlI	CCTC	8 cut(s)	54, 174, 177, 235, 350, 372, 438, 511
Mox20I	TGGCCA	1 cut(s)	17
MroXI	GAANNNNTTC	1 cut(s)	455
MscI	TGGCCA	1 cut(s)	17
MseI	TTAA	3 cut(s)	590, 678, 803
MslI	CAYNNNNRTG	2 cut(s)	92, 744
Msp20I	TGGCCA	1 cut(s)	17
MspA1I	CMGCKG	1 cut(s)	137
MspI	CCGG	2 cut(s)	291, 375
MspR9I	CCNGG	3 cut(s)	253, 278, 315
MvaI	CCWGG	3 cut(s)	253, 278, 315
MvnI	CGCG	1 cut(s)	48
MwoI	GCNNNNNNNGC	2 cut(s)	143, 698
NdeII	GATC	1 cut(s)	244
NlaIII	CATG	3 cut(s)	95, 517, 580
NlaIV	GGNNCC	3 cut(s)	185, 319, 331
NmuCI	GTSAC	2 cut(s)	85, 298
NsbI	TGCGCA	1 cut(s)	530
NspI	RCATGY	1 cut(s)	95
OliI	CACNNNNGTG	2 cut(s)	92, 744
PceI	AGGCCT	1 cut(s)	269
PciI	ACATGT	1 cut(s)	91
PciSI	GCTCTTC	1 cut(s)	363
PdmI	GAANNNNTTC	1 cut(s)	455
PfeI	GAWTC	2 cut(s)	256, 733
PfoI	TCCNGGA	1 cut(s)	313
PkrI	GCNGC	4 cut(s)	145, 148, 208, 811
PleI	GAGTC	1 cut(s)	119
PmaCI	CACGTG	1 cut(s)	746
PmlI	CACGTG	1 cut(s)	746
PpsI	GAGTC	1 cut(s)	119
Ppu21I	YACGTR	1 cut(s)	746
PscI	ACATGT	1 cut(s)	91
Psp6I	CCWGG	3 cut(s)	251, 276, 313
PspCI	CACGTG	1 cut(s)	746
PspGI	CCWGG	3 cut(s)	251, 276, 313
PspN4I	GGNNCC	3 cut(s)	185, 319, 331
PspPI	GGNCC	3 cut(s)	274, 317, 635
PsuI	RGATCY	1 cut(s)	244
RsaI	GTAC	1 cut(s)	536
RsaNI	GTAC	1 cut(s)	535
RseI	CAYNNNNRTG	2 cut(s)	92, 744
SapI	GCTCTTC	1 cut(s)	363
SaqAI	TTAA	3 cut(s)	590, 678, 803
SatI	GCNGC	4 cut(s)	144, 147, 207, 810
Sau3AI	GATC	1 cut(s)	244
Sau96I	GGNCC	3 cut(s)	274, 317, 635
SchI	GAGTC	1 cut(s)	120
ScrFI	CCNGG	3 cut(s)	253, 278, 315
SduI	GDGCHC	1 cut(s)	188
SexAI	ACCWGGT	1 cut(s)	276
SfaNI	GCATC	2 cut(s)	466, 845
SfcI	CTRYAG	1 cut(s)	99
SinI	GGWCC	2 cut(s)	274, 317
SmiMI	CAYNNNNRTG	2 cut(s)	92, 744
Sse9I	AATT	8 cut(s)	35, 157, 382, 586, 591, 605, 686, 763
SseBI	AGGCCT	1 cut(s)	269
SsiI	CCGC	5 cut(s)	135, 143, 146, 170, 834
StuI	AGGCCT	1 cut(s)	269
StyD4I	CCNGG	3 cut(s)	251, 276, 313
StyI	CCWWGG	2 cut(s)	270, 344
TaaI	ACNGT	4 cut(s)	85, 409, 826, 848
TaiI	ACGT	1 cut(s)	748
TaqI	TCGA	2 cut(s)	430, 459
TasI	AATT	8 cut(s)	35, 157, 382, 586, 591, 605, 686, 763
TatI	WGTACW	1 cut(s)	534
TauI	GCSGC	2 cut(s)	146, 149
TfiI	GAWTC	2 cut(s)	256, 733
Tru1I	TTAA	3 cut(s)	590, 678, 803
Tru9I	TTAA	3 cut(s)	590, 678, 803
TseFI	GTSAC	2 cut(s)	85, 298
TseI	GCWGC	2 cut(s)	206, 809
Tsp45I	GTSAC	2 cut(s)	85, 298
TspDTI	ATGAA	1 cut(s)	570
VpaK11BI	GGWCC	2 cut(s)	274, 317
XceI	RCATGY	1 cut(s)	95
XcmI	CCANNNNNNNNNTGG	1 cut(s)	232
XmnI	GAANNNNTTC	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.