Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002800

Physical Location & Seq

Genomic Coordinates Forward (+)

18077230 .. 18078894

Gene Structure 1665 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23613

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGAGGAGCCCTAACAAAAGCAGTAAAGCAGCAGAAGAAGAAGAAGCCGTTGAAGAAGTGAAAGAGGATCTACCCTGGATTCAAGAGAAGGCCTTGGACCTGGTGGAGTTCACCGGCTCTGTCACGCAGGCCATTCCTGGACCCAGAGATGGCACCAGCTCCCTCCCTTGGATTTTGGTTCTTCCTCTCGCTTATGCCGGTCTCAATTTTGTCATCGCCGTTGTCAAGACCGTCAAAAAGTTCTCTTCCCCTCGACATAAACGCAAGAAACTGGTCAATAAAAATGCTATGCTATGCAAATCAATAGACGAAATGTTTCAGAATGGCTCCGACCAAATCACGCCTGATGCCCTGAAACAACTCGTGCAAAATACAGGTTTTGGCATGGAGGAGATTTTGTGCAAGTACATCCATTATACTTTGAATGAAAAGCCATTCAACCCAGACATGGTTTCCAATTTAATTCAGCTCAGAAAAGCTTCTTTGTTCGATGATTCTCAGGTGGCTGAAATTCTAAATGAAATTTCAAGAAGAATTGTGCGAGACAAAGGTAAAGCATTGACCTACTACTATCATAACTTGTATGATCTAATTACACAATACTCCCTTTTCCATATAAAAAATAAAGAATCTGATAAGGACATGGAGGCGGTGAATGTATACCACCTCCTCCTACATCTGATTTTACTGACTACTTGTTTGCAACTTGCAGGCCTAGTTGTAATGGATATGGCAGGTTATACTGAACGGGGTTTCAAAAGAAAATTAGTCATTCAAGCCCTATATGGAAAGGTGTTCTATCTGTCAGAGGTAAGGGACCAAACAACCAAAATGACTTTGACCAACTGCCTGTATGGTTTATTTTTATTTTTTATTTTTCTTTTGTTGTTAGAAACTACCTTGATTCACATCATAAGAAAATATGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

309

Amino Acids

35.49

Weight (kDa)

8.18

Isoelectric Point (pI)

45.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARMH5	PF22915	125 - 187	4.1e-22	Armadillo-like helical domain-containing protein 5
ARMH5	PF22915	235 - 270	4.5e-08	Armadillo-like helical domain-containing protein 5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08540
fragaria_vesca	FvH4_4g37340
malus_domestica	MD13G1000800.v1.1 MD16G1004900.v1.1
prunus_persica	Prupe.1G351900_v2.0.a1
pyrus_communis	pycom13g00070
rosa_chinensis	RchiOBHm_Chr1g0316621 RchiOBHm_Chr3g0483721 RchiOBHm_Chr3g0483731 RchiOBHm_Chr4g0403031 RchiOBHm_Chr4g0447201 RchiOBHm_Chr6g0263291
rosa_laevigata	RLG00000005597
rosa_multiflora	Rmu_co8235609.1_g000001 Rmu_sc0000101.1_g000002 Rmu_sc0000310.1_g000018 Rmu_sc0001241.1_g000043 Rmu_ssc0000359.1_g000022
rosa_roxburghii	Rroxscaffold_5G00387570
rosa_rugosa	Rorug04G0379000
rosa_samantha	Rh1AG022300 Rh2BG461100 Rh2CG299400 Rh3AG256400 Rh4AG023400 Rh4AG023500 Rh4AG440200 Rh4BG449200 Rh4CG466200 Rh4DG447700 Rh5CG543000 Rh6AG123500 Rh6BG118500 Rh6CG116600 Rh6DG105200
rosa_wichuraiana	Rw1G002360 Rw4G001660 Rw4G037660 Rw6G025410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	725
AccB1I	GGYRCC	1 cut(s)	152
AccI	GTMKAC	1 cut(s)	660
AciI	CCGC	1 cut(s)	650
AclWI	GGATC	1 cut(s)	75
AcsI	RAATTY	2 cut(s)	510, 522
AfaI	GTAC	1 cut(s)	407
AfiI	CCNNNNNNNGG	3 cut(s)	149, 168, 448
AgsI	TTSAA	7 cut(s)	53, 83, 424, 439, 528, 757, 776
AjnI	CCWGG	3 cut(s)	74, 99, 136
AluBI	AGCT	3 cut(s)	159, 469, 479
AluI	AGCT	3 cut(s)	159, 469, 479
Alw26I	GTCTC	2 cut(s)	206, 537
AlwI	GGATC	1 cut(s)	75
AoxI	GGCC	3 cut(s)	90, 129, 712
ApeKI	GCWGC	1 cut(s)	29
ApoI	RAATTY	2 cut(s)	510, 522
ArsI	GACNNNNNNTTYG	2 cut(s)	682, 714
Asp700I	GAANNNNTTC	2 cut(s)	315, 478
AspS9I	GGNCC	3 cut(s)	97, 140, 817
AsuHPI	GGTGA	2 cut(s)	103, 664
AvaII	GGWCC	3 cut(s)	97, 140, 817
BanI	GGYRCC	1 cut(s)	152
BanII	GRGCYC	1 cut(s)	11
BauI	CACGAG	1 cut(s)	362
BbvI	GCAGC	1 cut(s)	41
BccI	CCATC	1 cut(s)	143
BceAI	ACGGC	2 cut(s)	32, 203
BciT130I	CCWGG	3 cut(s)	76, 101, 138
BcoDI	GTCTC	2 cut(s)	206, 537
BfaI	CTAG	2 cut(s)	716, 928
BfuAI	ACCTGC	1 cut(s)	725
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
Bme1390I	CCNGG	3 cut(s)	76, 101, 138
Bme18I	GGWCC	3 cut(s)	97, 140, 817
BmgT120I	GGNCC	3 cut(s)	97, 140, 817
BmiI	GGNNCC	5 cut(s)	8, 142, 154, 328, 818
BmrFI	CCNGG	3 cut(s)	76, 101, 138
BmsI	GCATC	1 cut(s)	337
BsaBI	GATNNNNATC	1 cut(s)	908
BsaI	GGTCTC	1 cut(s)	206
BsaJI	CCNNGG	3 cut(s)	74, 93, 167
BsaXI	ACNNNNNCTCC	2 cut(s)	383, 413
Bsc4I	CCNNNNNNNGG	3 cut(s)	149, 168, 448
Bse118I	RCCGGY	2 cut(s)	113, 197
Bse1I	ACTGG	1 cut(s)	276
Bse8I	GATNNNNATC	1 cut(s)	908
BseBI	CCWGG	3 cut(s)	76, 101, 138
BseDI	CCNNGG	3 cut(s)	74, 93, 167
BseGI	GGATG	1 cut(s)	408
BseJI	GATNNNNATC	1 cut(s)	908
BseLI	CCNNNNNNNGG	3 cut(s)	149, 168, 448
BseMII	CTCAG	2 cut(s)	484, 512
BseNI	ACTGG	1 cut(s)	276
BseRI	GAGGAG	3 cut(s)	19, 404, 659
BseXI	GCAGC	1 cut(s)	41
BshFI	GGCC	3 cut(s)	92, 131, 714
BshNI	GGYRCC	1 cut(s)	152
BsiSI	CCGG	2 cut(s)	114, 198
BslFI	GGGAC	1 cut(s)	830
BslI	CCNNNNNNNGG	3 cut(s)	149, 168, 448
BsmAI	GTCTC	2 cut(s)	206, 537
BsmFI	GGGAC	1 cut(s)	830
BsnI	GGCC	3 cut(s)	92, 131, 714
Bso31I	GGTCTC	1 cut(s)	206
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	2 cut(s)	67, 586
BspACI	CCGC	1 cut(s)	650
BspANI	GGCC	3 cut(s)	92, 131, 714
BspCNI	CTCAG	2 cut(s)	483, 511
BspLI	GGNNCC	5 cut(s)	8, 142, 154, 328, 818
BspMI	ACCTGC	1 cut(s)	725
BspPI	GGATC	1 cut(s)	75
BspT107I	GGYRCC	1 cut(s)	152
BspTNI	GGTCTC	1 cut(s)	206
BsrFI	RCCGGY	2 cut(s)	113, 197
BsrI	ACTGG	1 cut(s)	276
BssAI	RCCGGY	2 cut(s)	113, 197
BssECI	CCNNGG	3 cut(s)	74, 93, 167
BssMI	GATC	2 cut(s)	67, 586
BssNAI	GTATAC	1 cut(s)	661
BssSI	CACGAG	1 cut(s)	362
BssT1I	CCWWGG	2 cut(s)	93, 167
Bst1107I	GTATAC	1 cut(s)	661
Bst2BI	CACGAG	1 cut(s)	362
Bst2UI	CCWGG	3 cut(s)	76, 101, 138
Bst4CI	ACNGT	1 cut(s)	232
Bst6I	CTCTTC	1 cut(s)	250
BstC8I	GCNNGC	2 cut(s)	129, 712
BstDEI	CTNAG	2 cut(s)	470, 498
BstF5I	GGATG	1 cut(s)	408
BstKTI	GATC	2 cut(s)	70, 589
BstMAI	GTCTC	2 cut(s)	206, 537
BstMBI	GATC	2 cut(s)	67, 586
BstNI	CCWGG	3 cut(s)	76, 101, 138
BstSCI	CCNGG	3 cut(s)	74, 99, 136
BstV1I	GCAGC	1 cut(s)	41
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
BstZ17I	GTATAC	1 cut(s)	661
BsuRI	GGCC	3 cut(s)	92, 131, 714
BtgZI	GCGATG	1 cut(s)	199
BtsCI	GGATG	1 cut(s)	408
BveI	ACCTGC	1 cut(s)	725
Cac8I	GCNNGC	2 cut(s)	129, 712
Cfr10I	RCCGGY	2 cut(s)	113, 197
Cfr13I	GGNCC	3 cut(s)	97, 140, 817
CsiI	ACCWGGT	1 cut(s)	99
Csp6I	GTAC	1 cut(s)	406
CviAII	CATG	3 cut(s)	385, 448, 643
CviQI	GTAC	1 cut(s)	406
DdeI	CTNAG	2 cut(s)	470, 498
DpnI	GATC	2 cut(s)	69, 588
DpnII	GATC	2 cut(s)	67, 586
Eam1104I	CTCTTC	1 cut(s)	250
EarI	CTCTTC	1 cut(s)	250
Eco130I	CCWWGG	2 cut(s)	93, 167
Eco147I	AGGCCT	2 cut(s)	92, 714
Eco24I	GRGCYC	1 cut(s)	11
Eco31I	GGTCTC	1 cut(s)	206
Eco47I	GGWCC	3 cut(s)	97, 140, 817
EcoRII	CCWGG	3 cut(s)	74, 99, 136
EcoT14I	CCWWGG	2 cut(s)	93, 167
EcoT38I	GRGCYC	1 cut(s)	11
ErhI	CCWWGG	2 cut(s)	93, 167
FaeI	CATG	3 cut(s)	388, 451, 646
FaqI	GGGAC	1 cut(s)	830
FatI	CATG	3 cut(s)	384, 447, 642
FblI	GTMKAC	1 cut(s)	660
Fnu4HI	GCNGC	1 cut(s)	30
FokI	GGATG	1 cut(s)	395
FriOI	GRGCYC	1 cut(s)	11
Fsp4HI	GCNGC	1 cut(s)	30
FspBI	CTAG	2 cut(s)	716, 928
GluI	GCNGC	1 cut(s)	30
HaeIII	GGCC	3 cut(s)	92, 131, 714
HapII	CCGG	2 cut(s)	114, 198
Hin1II	CATG	3 cut(s)	388, 451, 646
HindIII	AAGCTT	1 cut(s)	477
HinfI	GANTC	4 cut(s)	79, 494, 629, 904
HpaII	CCGG	2 cut(s)	114, 198
HphI	GGTGA	2 cut(s)	103, 664
Hpy166II	GTNNAC	2 cut(s)	111, 661
Hpy188I	TCNGA	6 cut(s)	321, 331, 473, 634, 681, 808
Hpy188III	TCNNGA	3 cut(s)	83, 226, 528
Hpy8I	GTNNAC	2 cut(s)	111, 661
HpyAV	CCTTC	1 cut(s)	82
HpyCH4III	ACNGT	1 cut(s)	232
HpyCH4V	TGCA	5 cut(s)	297, 367, 402, 703, 710
HpyF3I	CTNAG	2 cut(s)	470, 498
Hsp92II	CATG	3 cut(s)	388, 451, 646
Kzo9I	GATC	2 cut(s)	67, 586
LmnI	GCTCC	3 cut(s)	6, 164, 332
Lsp1109I	GCAGC	1 cut(s)	41
LweI	GCATC	1 cut(s)	337
MabI	ACCWGGT	1 cut(s)	99
MaeI	CTAG	2 cut(s)	716, 928
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	2 cut(s)	69, 588
MboI	GATC	2 cut(s)	67, 586
MboII	GAAGA	7 cut(s)	47, 50, 53, 65, 173, 237, 543
MflI	RGATCY	1 cut(s)	67
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	8 cut(s)	205, 457, 462, 510, 522, 534, 591, 764
MmeI	TCCRAC	1 cut(s)	354
MnlI	CCTC	9 cut(s)	58, 173, 195, 261, 382, 640, 677, 680, 802
MroXI	GAANNNNTTC	2 cut(s)	315, 478
MseI	TTAA	1 cut(s)	461
MspI	CCGG	2 cut(s)	114, 198
MspR9I	CCNGG	3 cut(s)	76, 101, 138
MvaI	CCWGG	3 cut(s)	76, 101, 138
NdeII	GATC	2 cut(s)	67, 586
NlaIII	CATG	3 cut(s)	388, 451, 646
NlaIV	GGNNCC	5 cut(s)	8, 142, 154, 328, 818
NmuCI	GTSAC	1 cut(s)	121
PceI	AGGCCT	2 cut(s)	92, 714
PdmI	GAANNNNTTC	2 cut(s)	315, 478
PfeI	GAWTC	4 cut(s)	79, 494, 629, 904
PfoI	TCCNGGA	1 cut(s)	136
PkrI	GCNGC	1 cut(s)	31
Psp6I	CCWGG	3 cut(s)	74, 99, 136
PspGI	CCWGG	3 cut(s)	74, 99, 136
PspN4I	GGNNCC	5 cut(s)	8, 142, 154, 328, 818
PspPI	GGNCC	3 cut(s)	97, 140, 817
PsuI	RGATCY	1 cut(s)	67
RsaI	GTAC	1 cut(s)	407
RsaNI	GTAC	1 cut(s)	406
SaqAI	TTAA	1 cut(s)	461
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	2 cut(s)	67, 586
Sau96I	GGNCC	3 cut(s)	97, 140, 817
ScrFI	CCNGG	3 cut(s)	76, 101, 138
SduI	GDGCHC	1 cut(s)	11
SexAI	ACCWGGT	1 cut(s)	99
SfaNI	GCATC	1 cut(s)	337
SinI	GGWCC	3 cut(s)	97, 140, 817
Sse9I	AATT	8 cut(s)	205, 457, 462, 510, 522, 534, 591, 764
SseBI	AGGCCT	2 cut(s)	92, 714
SsiI	CCGC	1 cut(s)	650
SspMI	CTAG	2 cut(s)	716, 928
StuI	AGGCCT	2 cut(s)	92, 714
StyD4I	CCNGG	3 cut(s)	74, 99, 136
StyI	CCWWGG	2 cut(s)	93, 167
TaaI	ACNGT	1 cut(s)	232
TaqI	TCGA	2 cut(s)	253, 489
TasI	AATT	8 cut(s)	205, 457, 462, 510, 522, 534, 591, 764
TatI	WGTACW	1 cut(s)	405
TfiI	GAWTC	4 cut(s)	79, 494, 629, 904
Tru1I	TTAA	1 cut(s)	461
Tru9I	TTAA	1 cut(s)	461
TseFI	GTSAC	1 cut(s)	121
TseI	GCWGC	1 cut(s)	29
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	2 cut(s)	441, 534
VpaK11BI	GGWCC	3 cut(s)	97, 140, 817
XapI	RAATTY	2 cut(s)	510, 522
XmiI	GTMKAC	1 cut(s)	660
XmnI	GAANNNNTTC	2 cut(s)	315, 478
XspI	CTAG	2 cut(s)	716, 928

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.