Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001241.1

Orthogroup ID

OG0002800

Physical Location & Seq

Genomic Coordinates Reverse (-)

149531 .. 149923

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001241.1_g000043.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

atggcttttgctttggccacttcctttgcttcccaattgctccctcgcgccccacccaaaggtctccctttgcttcgtcccacagtcgcacctgtgtctgtagctatgagagtccgagctggcaggccgttattcgctgtggcggcggtgaagagtaattccaatccttcgccgatgacgaagccccctaacaaaagaagtaaagcagcagaagaagaagaagccgttgaagaagtggaagaggatctaccttggattcaagagaaggccttggacctggtggagttcaccggctctgtcacgcaggccattcctggacccagagttggcaccagctccttcccttggattttggcttttcctctcgcttatgccggtctcaattttgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

130

Amino Acids

13.94

Weight (kDa)

6.31

Isoelectric Point (pI)

56.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08540
fragaria_vesca	FvH4_4g37340
malus_domestica	MD13G1000800.v1.1 MD16G1004900.v1.1
prunus_persica	Prupe.1G351900_v2.0.a1
pyrus_communis	pycom13g00070
rosa_chinensis	RchiOBHm_Chr1g0316621 RchiOBHm_Chr3g0483721 RchiOBHm_Chr3g0483731 RchiOBHm_Chr4g0403031 RchiOBHm_Chr4g0447201 RchiOBHm_Chr6g0263291
rosa_laevigata	RLG00000005597
rosa_multiflora	Rmu_co8235609.1_g000001 Rmu_sc0000101.1_g000002 Rmu_sc0000310.1_g000018 Rmu_sc0001241.1_g000043 Rmu_ssc0000359.1_g000022
rosa_roxburghii	Rroxscaffold_5G00387570
rosa_rugosa	Rorug04G0379000
rosa_samantha	Rh1AG022300 Rh2BG461100 Rh2CG299400 Rh3AG256400 Rh4AG023400 Rh4AG023500 Rh4AG440200 Rh4BG449200 Rh4CG466200 Rh4DG447700 Rh5CG543000 Rh6AG123500 Rh6BG118500 Rh6CG116600 Rh6DG105200
rosa_wichuraiana	Rw1G002360 Rw4G001660 Rw4G037660 Rw6G025410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	329
AccII	CGCG	1 cut(s)	48
AciI	CCGC	2 cut(s)	143, 146
AclWI	GGATC	1 cut(s)	252
AcoI	YGGCCR	1 cut(s)	15
AfiI	CCNNNNNNNGG	3 cut(s)	59, 326, 345
AgsI	TTSAA	2 cut(s)	230, 260
AjnI	CCWGG	2 cut(s)	276, 313
AluBI	AGCT	3 cut(s)	104, 119, 336
AluI	AGCT	3 cut(s)	104, 119, 336
Alw26I	GTCTC	2 cut(s)	68, 383
AlwI	GGATC	1 cut(s)	252
AoxI	GGCC	4 cut(s)	15, 125, 267, 306
ApeKI	GCWGC	1 cut(s)	206
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	2 cut(s)	274, 317
AsuHPI	GGTGA	2 cut(s)	160, 280
AvaII	GGWCC	2 cut(s)	274, 317
BalI	TGGCCA	1 cut(s)	17
BanI	GGYRCC	1 cut(s)	329
BarI	GAAGNNNNNNTAC	2 cut(s)	231, 263
BbvI	GCAGC	1 cut(s)	218
BceAI	ACGGC	2 cut(s)	112, 209
BciT130I	CCWGG	2 cut(s)	278, 315
BcoDI	GTCTC	2 cut(s)	68, 383
BfmI	CTRYAG	1 cut(s)	99
BisI	GCNGC	2 cut(s)	144, 207
BlsI	GCNGC	2 cut(s)	145, 208
Bme1390I	CCNGG	2 cut(s)	278, 315
Bme18I	GGWCC	2 cut(s)	274, 317
BmgT120I	GGNCC	2 cut(s)	274, 317
BmiI	GGNNCC	2 cut(s)	319, 331
BmrFI	CCNGG	2 cut(s)	278, 315
BsaI	GGTCTC	2 cut(s)	68, 383
BsaJI	CCNNGG	3 cut(s)	251, 270, 344
Bsc4I	CCNNNNNNNGG	3 cut(s)	59, 326, 345
Bse118I	RCCGGY	2 cut(s)	290, 374
BseBI	CCWGG	2 cut(s)	278, 315
BseDI	CCNNGG	3 cut(s)	251, 270, 344
BseLI	CCNNNNNNNGG	3 cut(s)	59, 326, 345
BseXI	GCAGC	1 cut(s)	218
Bsh1236I	CGCG	1 cut(s)	48
BshFI	GGCC	4 cut(s)	17, 127, 269, 308
BshNI	GGYRCC	1 cut(s)	329
BsiSI	CCGG	2 cut(s)	291, 375
BslFI	GGGAC	1 cut(s)	63
BslI	CCNNNNNNNGG	3 cut(s)	59, 326, 345
BsmAI	GTCTC	2 cut(s)	68, 383
BsmFI	GGGAC	1 cut(s)	63
BsnI	GGCC	4 cut(s)	17, 127, 269, 308
Bso31I	GGTCTC	2 cut(s)	68, 383
Bsp143I	GATC	1 cut(s)	244
BspACI	CCGC	2 cut(s)	143, 146
BspANI	GGCC	4 cut(s)	17, 127, 269, 308
BspFNI	CGCG	1 cut(s)	48
BspLI	GGNNCC	2 cut(s)	319, 331
BspPI	GGATC	1 cut(s)	252
BspT107I	GGYRCC	1 cut(s)	329
BspTNI	GGTCTC	2 cut(s)	68, 383
BsrFI	RCCGGY	2 cut(s)	290, 374
BssAI	RCCGGY	2 cut(s)	290, 374
BssECI	CCNNGG	3 cut(s)	251, 270, 344
BssMI	GATC	1 cut(s)	244
BssT1I	CCWWGG	3 cut(s)	251, 270, 344
Bst2UI	CCWGG	2 cut(s)	278, 315
Bst4CI	ACNGT	1 cut(s)	85
Bst6I	CTCTTC	2 cut(s)	146, 234
BstC8I	GCNNGC	3 cut(s)	121, 125, 306
BstFNI	CGCG	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	1 cut(s)	247
BstMAI	GTCTC	2 cut(s)	68, 383
BstMBI	GATC	1 cut(s)	244
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstNI	CCWGG	2 cut(s)	278, 315
BstSCI	CCNGG	2 cut(s)	276, 313
BstSFI	CTRYAG	1 cut(s)	99
BstUI	CGCG	1 cut(s)	48
BstV1I	GCAGC	1 cut(s)	218
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
BsuRI	GGCC	4 cut(s)	17, 127, 269, 308
Cac8I	GCNNGC	3 cut(s)	121, 125, 306
CfoI	GCGC	1 cut(s)	50
Cfr10I	RCCGGY	2 cut(s)	290, 374
Cfr13I	GGNCC	2 cut(s)	274, 317
CsiI	ACCWGGT	1 cut(s)	276
CspCI	CAANNNNNGTGG	2 cut(s)	7, 42
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
EaeI	YGGCCR	1 cut(s)	15
Eam1104I	CTCTTC	2 cut(s)	146, 234
EarI	CTCTTC	2 cut(s)	146, 234
Eco130I	CCWWGG	3 cut(s)	251, 270, 344
Eco147I	AGGCCT	1 cut(s)	269
Eco31I	GGTCTC	2 cut(s)	68, 383
Eco47I	GGWCC	2 cut(s)	274, 317
EcoRII	CCWGG	2 cut(s)	276, 313
EcoT14I	CCWWGG	3 cut(s)	251, 270, 344
ErhI	CCWWGG	3 cut(s)	251, 270, 344
FaiI	YATR	2 cut(s)	107, 372
FaqI	GGGAC	1 cut(s)	63
Fnu4HI	GCNGC	2 cut(s)	144, 207
Fsp4HI	GCNGC	2 cut(s)	144, 207
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	2 cut(s)	144, 207
HaeIII	GGCC	4 cut(s)	17, 127, 269, 308
HapII	CCGG	2 cut(s)	291, 375
HhaI	GCGC	1 cut(s)	50
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HinfI	GANTC	2 cut(s)	111, 256
HpaII	CCGG	2 cut(s)	291, 375
HphI	GGTGA	2 cut(s)	160, 280
Hpy166II	GTNNAC	1 cut(s)	288
Hpy188I	TCNGA	1 cut(s)	116
Hpy188III	TCNNGA	1 cut(s)	260
Hpy8I	GTNNAC	1 cut(s)	288
HpyAV	CCTTC	3 cut(s)	177, 259, 349
HpyCH4III	ACNGT	1 cut(s)	85
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
HspAI	GCGC	1 cut(s)	48
Kzo9I	GATC	1 cut(s)	244
LmnI	GCTCC	2 cut(s)	45, 341
Lsp1109I	GCAGC	1 cut(s)	218
MabI	ACCWGGT	1 cut(s)	276
MaeIII	GTNAC	1 cut(s)	298
MalI	GATC	1 cut(s)	246
MboI	GATC	1 cut(s)	244
MboII	GAAGA	6 cut(s)	163, 224, 227, 230, 242, 251
MfeI	CAATTG	1 cut(s)	35
MflI	RGATCY	1 cut(s)	244
MlsI	TGGCCA	1 cut(s)	17
MluCI	AATT	3 cut(s)	35, 157, 382
MluNI	TGGCCA	1 cut(s)	17
MlyI	GAGTC	1 cut(s)	120
MnlI	CCTC	3 cut(s)	54, 235, 372
Mox20I	TGGCCA	1 cut(s)	17
MscI	TGGCCA	1 cut(s)	17
Msp20I	TGGCCA	1 cut(s)	17
MspI	CCGG	2 cut(s)	291, 375
MspR9I	CCNGG	2 cut(s)	278, 315
MunI	CAATTG	1 cut(s)	35
MvaI	CCWGG	2 cut(s)	278, 315
MvnI	CGCG	1 cut(s)	48
MwoI	GCNNNNNNNGC	1 cut(s)	143
NdeII	GATC	1 cut(s)	244
NlaIV	GGNNCC	2 cut(s)	319, 331
NmuCI	GTSAC	1 cut(s)	298
PceI	AGGCCT	1 cut(s)	269
PcsI	WCGNNNNNNNCGW	1 cut(s)	176
PfeI	GAWTC	1 cut(s)	256
PfoI	TCCNGGA	1 cut(s)	313
PkrI	GCNGC	2 cut(s)	145, 208
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
Psp6I	CCWGG	2 cut(s)	276, 313
PspGI	CCWGG	2 cut(s)	276, 313
PspN4I	GGNNCC	2 cut(s)	319, 331
PspPI	GGNCC	2 cut(s)	274, 317
PsuI	RGATCY	1 cut(s)	244
SatI	GCNGC	2 cut(s)	144, 207
Sau3AI	GATC	1 cut(s)	244
Sau96I	GGNCC	2 cut(s)	274, 317
SchI	GAGTC	1 cut(s)	120
ScrFI	CCNGG	2 cut(s)	278, 315
SetI	ASST	7 cut(s)	64, 94, 106, 121, 253, 279, 338
SexAI	ACCWGGT	1 cut(s)	276
SfcI	CTRYAG	1 cut(s)	99
SinI	GGWCC	2 cut(s)	274, 317
Sse9I	AATT	3 cut(s)	35, 157, 382
SseBI	AGGCCT	1 cut(s)	269
SsiI	CCGC	2 cut(s)	143, 146
StuI	AGGCCT	1 cut(s)	269
StyD4I	CCNGG	2 cut(s)	276, 313
StyI	CCWWGG	3 cut(s)	251, 270, 344
TaaI	ACNGT	1 cut(s)	85
TasI	AATT	3 cut(s)	35, 157, 382
TauI	GCSGC	1 cut(s)	146
TfiI	GAWTC	1 cut(s)	256
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	1 cut(s)	206
Tsp45I	GTSAC	1 cut(s)	298
VpaK11BI	GGWCC	2 cut(s)	274, 317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.