FvH4_4g37340

RNA splicing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0002800
Physical Location & Seq
Forward (+)
33844372 .. 33846788
2417 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g37340.t1

Sequence Viewer

Length: 978 bp
ATGGCTTCTGCTCTGGCCACTGCCTGTTCTTCCCAACTGCTCCCTCCTCGCAAAGGTCTCCCGTTTCTTGGTCCCACTGTTTCTCCTGCTTTTGTGTCTCTACCTGTCAGAGTCCGAGCGAGAAGGCCTCTTTTAGCTGCGGCGGCGGCAAAGAGTAATTCCAATCCTTCGCCGGCGACGACGAACAAGAACAGTAAAGATAAAGCAGCCGAAGAAGAAGCCGTTGAAGAGGTGGAAGAGGATCTACCATGGATTCAGGAGAAGGCCTTGGACCTGGTGGAGTTCACCGGCTCTGTCACACAGGCCATTCCTGGCCCCAGAGTCGGCACCAGCTCTCTCCCTTGGATTTTGGCTCTTCCTCTCGCCTATGTCGGTCTTTCTTTTGTCATTGCCGTTGTCAAGACCGTCAAAAAGTTCTCCTCGCCTCGACATAAACGCAAGAAGCTGGTCAATAAAAATGCTATGCTCTGCAAATCAATAGACGAAATGTTTCAGAGTGGCTCTCACCAAATCACGCCGGATGCCCTCAAACAACTTGTGCAAAAGACAGGTTTTGGCATGGAGGAGATTTTGCGCAAGTACATTCGTTATACTTTGAATGAAAAACCGTTCAACCCGGACATGGTTTCCGGTTTAATTCAGCTTAGGAAAGCTTCTTTGTTGGATGATTCTCAGGTGGCTGAAATTCTAAATGAGATTTCTAGAAGAATTGTGCGAGACAAAGGCCCAGTTGTAATGGATATGGCAGGTTATACTGAACGGGGTTTCAAGAGAAAATTAGCCGTTCAAGCGCTATTTGGAAAGGTGTTCTATCTGTCGGAGCTCCCAGAGTTCTGTTCGAGGGATAGTTCCTTAATTGTCAAAGAAATATTTGGTGTTACAGATGAGGATGCAGACAGATTACGGATGCATACAGCCTCTGAAGCTGGGGATATGGAATCACTAGAAAAGATGGTTGATGATTCAGATTCAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

326

Amino Acids

35.81

Weight (kDa)

8.29

Isoelectric Point (pI)

51.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARMH5 PF22915 183 - 274 1.3e-40 Armadillo-like helical domain-containing protein 5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 575
Acc36I ACCTGC 1 cut(s) 737
AccB1I GGYRCC 1 cut(s) 326
AciI CCGC 3 cut(s) 140, 143, 146
AclWI GGATC 1 cut(s) 249
AcoI YGGCCR 1 cut(s) 15
AcsI RAATTY 1 cut(s) 684
AcuI CTGAAG 1 cut(s) 942
AfaI GTAC 1 cut(s) 581
AfeI AGCGCT 1 cut(s) 792
AfiI CCNNNNNNNGG 4 cut(s) 53, 68, 323, 622
AgsI TTSAA 5 cut(s) 227, 598, 613, 769, 788
AjnI CCWGG 2 cut(s) 273, 310
AluBI AGCT 7 cut(s) 137, 333, 445, 643, 653, 823, 926
AluI AGCT 7 cut(s) 137, 333, 445, 643, 653, 823, 926
Alw21I GWGCWC 1 cut(s) 825
Alw26I GTCTC 3 cut(s) 62, 102, 711
AlwI GGATC 1 cut(s) 249
AlwNI CAGNNNCTG 1 cut(s) 920
Aor51HI AGCGCT 1 cut(s) 792
AoxI GGCC 6 cut(s) 15, 125, 264, 303, 313, 724
ApeKI GCWGC 2 cut(s) 137, 206
ApoI RAATTY 1 cut(s) 684
Asp700I GAANNNNTTC 1 cut(s) 489
AspLEI GCGC 2 cut(s) 576, 793
AspS9I GGNCC 4 cut(s) 71, 271, 314, 725
AsuC2I CCSGG 1 cut(s) 617
AsuHPI GGTGA 2 cut(s) 277, 497
AvaII GGWCC 2 cut(s) 71, 271
BalI TGGCCA 1 cut(s) 17
BanI GGYRCC 1 cut(s) 326
BanII GRGCYC 1 cut(s) 825
BarI GAAGNNNNNNTAC 2 cut(s) 228, 260
Bbv12I GWGCWC 1 cut(s) 825
BbvI GCAGC 2 cut(s) 124, 218
BccI CCATC 1 cut(s) 946
BceAI ACGGC 3 cut(s) 206, 377, 767
BciT130I CCWGG 2 cut(s) 275, 312
BcnI CCSGG 1 cut(s) 617
BcoDI GTCTC 3 cut(s) 62, 102, 711
BfaI CTAG 3 cut(s) 702, 944, 976
BfoI RGCGCY 1 cut(s) 794
BfuAI ACCTGC 1 cut(s) 737
BisI GCNGC 5 cut(s) 138, 141, 144, 147, 207
BlsI GCNGC 5 cut(s) 139, 142, 145, 148, 208
Bme1390I CCNGG 3 cut(s) 275, 312, 617
Bme18I GGWCC 2 cut(s) 71, 271
BmgT120I GGNCC 4 cut(s) 71, 271, 314, 725
BmiI GGNNCC 3 cut(s) 73, 316, 328
BmrFI CCNGG 3 cut(s) 275, 312, 617
BmrI ACTGGG 1 cut(s) 722
BmsI GCATC 3 cut(s) 511, 880, 897
BmuI ACTGGG 1 cut(s) 722
BplI GAGNNNNNCTC 4 cut(s) 112, 144, 487, 519
Bpu10I CCTNAGC 1 cut(s) 644
BpuMI CCSGG 1 cut(s) 617
BsaI GGTCTC 1 cut(s) 62
BsaJI CCNNGG 3 cut(s) 248, 267, 341
BsaWI WCCGGW 1 cut(s) 629
BsaXI ACNNNNNCTCC 2 cut(s) 67, 97
Bsc4I CCNNNNNNNGG 4 cut(s) 53, 68, 323, 622
Bse118I RCCGGY 2 cut(s) 172, 287
Bse1I ACTGG 1 cut(s) 728
Bse3DI GCAATG 1 cut(s) 387
BseBI CCWGG 2 cut(s) 275, 312
BseDI CCNNGG 3 cut(s) 248, 267, 341
BseGI GGATG 4 cut(s) 526, 670, 895, 912
BseLI CCNNNNNNNGG 4 cut(s) 53, 68, 323, 622
BseMI GCAATG 1 cut(s) 387
BseMII CTCAG 1 cut(s) 686
BseNI ACTGG 1 cut(s) 728
BseRI GAGGAG 3 cut(s) 36, 409, 578
BseXI GCAGC 2 cut(s) 124, 218
BseYI CCCAGC 1 cut(s) 926
BshFI GGCC 6 cut(s) 17, 127, 266, 305, 315, 726
BshNI GGYRCC 1 cut(s) 326
BsiHKAI GWGCWC 1 cut(s) 825
BsiSI CCGG 5 cut(s) 173, 288, 518, 617, 630
BslFI GGGAC 1 cut(s) 57
BslI CCNNNNNNNGG 4 cut(s) 53, 68, 323, 622
BsmAI GTCTC 3 cut(s) 62, 102, 711
BsmFI GGGAC 1 cut(s) 57
BsnI GGCC 6 cut(s) 17, 127, 266, 305, 315, 726
Bso31I GGTCTC 1 cut(s) 62
Bsp1286I GDGCHC 1 cut(s) 825
Bsp143I GATC 1 cut(s) 241
Bsp19I CCATGG 1 cut(s) 248
BspACI CCGC 3 cut(s) 140, 143, 146
BspANI GGCC 6 cut(s) 17, 127, 266, 305, 315, 726
BspCNI CTCAG 1 cut(s) 685
BspLI GGNNCC 3 cut(s) 73, 316, 328
BspMI ACCTGC 1 cut(s) 737
BspPI GGATC 1 cut(s) 249
BspQI GCTCTTC 1 cut(s) 360
BspT107I GGYRCC 1 cut(s) 326
BspTNI GGTCTC 1 cut(s) 62
BsrDI GCAATG 1 cut(s) 387
BsrFI RCCGGY 2 cut(s) 172, 287
BsrI ACTGG 1 cut(s) 728
BssAI RCCGGY 2 cut(s) 172, 287
BssECI CCNNGG 3 cut(s) 248, 267, 341
BssMI GATC 1 cut(s) 241
BssT1I CCWWGG 3 cut(s) 248, 267, 341
Bst2UI CCWGG 2 cut(s) 275, 312
Bst4CI ACNGT 4 cut(s) 79, 194, 406, 609
Bst6I CTCTTC 3 cut(s) 222, 231, 360
BstC8I GCNNGC 1 cut(s) 174
BstDEI CTNAG 2 cut(s) 644, 672
BstDSI CCRYGG 1 cut(s) 248
BstENI CCTNNNNNAGG 1 cut(s) 51
BstF5I GGATG 4 cut(s) 526, 670, 895, 912
BstH2I RGCGCY 1 cut(s) 794
BstHHI GCGC 2 cut(s) 576, 793
BstKTI GATC 1 cut(s) 244
BstMAI GTCTC 3 cut(s) 62, 102, 711
BstMBI GATC 1 cut(s) 241
BstMWI GCNNNNNNNGC 4 cut(s) 143, 146, 788, 923
BstNI CCWGG 2 cut(s) 275, 312
BstSCI CCNGG 3 cut(s) 273, 310, 615
BstV1I GCAGC 2 cut(s) 124, 218
BstX2I RGATCY 1 cut(s) 241
BstYI RGATCY 1 cut(s) 241
BsuRI GGCC 6 cut(s) 17, 127, 266, 305, 315, 726
BtgI CCRYGG 1 cut(s) 248
BtsCI GGATG 4 cut(s) 526, 670, 895, 912
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 2 cut(s) 18, 75
BveI ACCTGC 1 cut(s) 737
Cac8I GCNNGC 1 cut(s) 174
CaiI CAGNNNCTG 1 cut(s) 920
CfoI GCGC 2 cut(s) 576, 793
Cfr10I RCCGGY 2 cut(s) 172, 287
Cfr13I GGNCC 4 cut(s) 71, 271, 314, 725
CsiI ACCWGGT 1 cut(s) 273
Csp6I GTAC 1 cut(s) 580
CviAII CATG 3 cut(s) 249, 559, 622
CviQI GTAC 1 cut(s) 580
DdeI CTNAG 2 cut(s) 644, 672
DpnI GATC 1 cut(s) 243
DpnII GATC 1 cut(s) 241
EaeI YGGCCR 1 cut(s) 15
Eam1104I CTCTTC 3 cut(s) 222, 231, 360
EarI CTCTTC 3 cut(s) 222, 231, 360
Ecl136II GAGCTC 1 cut(s) 823
Eco130I CCWWGG 3 cut(s) 248, 267, 341
Eco147I AGGCCT 2 cut(s) 127, 266
Eco24I GRGCYC 1 cut(s) 825
Eco31I GGTCTC 1 cut(s) 62
Eco47I GGWCC 2 cut(s) 71, 271
Eco47III AGCGCT 1 cut(s) 792
Eco53kI GAGCTC 1 cut(s) 823
Eco57I CTGAAG 1 cut(s) 942
EcoICRI GAGCTC 1 cut(s) 823
EcoNI CCTNNNNNAGG 1 cut(s) 51
EcoRII CCWGG 2 cut(s) 273, 310
EcoT14I CCWWGG 3 cut(s) 248, 267, 341
EcoT22I ATGCAT 1 cut(s) 912
EcoT38I GRGCYC 1 cut(s) 825
ErhI CCWWGG 3 cut(s) 248, 267, 341
FaeI CATG 3 cut(s) 252, 562, 625
FaqI GGGAC 1 cut(s) 57
FatI CATG 3 cut(s) 248, 558, 621
Fnu4HI GCNGC 5 cut(s) 138, 141, 144, 147, 207
FokI GGATG 4 cut(s) 533, 677, 902, 919
FriOI GRGCYC 1 cut(s) 825
Fsp4HI GCNGC 5 cut(s) 138, 141, 144, 147, 207
FspBI CTAG 3 cut(s) 702, 944, 976
FspI TGCGCA 1 cut(s) 575
GlaI GCGC 2 cut(s) 575, 792
GluI GCNGC 5 cut(s) 138, 141, 144, 147, 207
GsaI CCCAGC 1 cut(s) 930
HaeII RGCGCY 1 cut(s) 794
HaeIII GGCC 6 cut(s) 17, 127, 266, 305, 315, 726
HapII CCGG 5 cut(s) 173, 288, 518, 617, 630
HhaI GCGC 2 cut(s) 576, 793
Hin1II CATG 3 cut(s) 252, 562, 625
Hin6I GCGC 2 cut(s) 574, 791
HinP1I GCGC 2 cut(s) 574, 791
HindIII AAGCTT 1 cut(s) 651
HinfI GANTC 7 cut(s) 111, 253, 321, 668, 938, 962, 968
HpaII CCGG 5 cut(s) 173, 288, 518, 617, 630
HphI GGTGA 2 cut(s) 277, 497
Hpy166II GTNNAC 1 cut(s) 285
Hpy188I TCNGA 7 cut(s) 110, 116, 495, 820, 922, 967, 973
Hpy188III TCNNGA 4 cut(s) 257, 400, 702, 769
Hpy8I GTNNAC 1 cut(s) 285
Hpy99I CGWCG 2 cut(s) 181, 184
HpyAV CCTTC 3 cut(s) 117, 177, 256
HpyCH4III ACNGT 4 cut(s) 79, 194, 406, 609
HpyCH4V TGCA 4 cut(s) 471, 541, 893, 910
HpyF10VI GCNNNNNNNGC 4 cut(s) 143, 146, 788, 923
HpyF3I CTNAG 2 cut(s) 644, 672
Hsp92II CATG 3 cut(s) 252, 562, 625
HspAI GCGC 2 cut(s) 574, 791
KroI GCCGGC 1 cut(s) 172
KroNI GCCGGC 1 cut(s) 174
Kzo9I GATC 1 cut(s) 241
LguI GCTCTTC 1 cut(s) 360
LmnI GCTCC 3 cut(s) 45, 820, 828
Lsp1109I GCAGC 2 cut(s) 124, 218
LweI GCATC 3 cut(s) 511, 880, 897
MabI ACCWGGT 1 cut(s) 273
MaeI CTAG 3 cut(s) 702, 944, 976
MaeIII GTNAC 2 cut(s) 295, 877
MalI GATC 1 cut(s) 243
MboI GATC 1 cut(s) 241
MboII GAAGA 7 cut(s) 21, 224, 227, 239, 248, 347, 717
MflI RGATCY 1 cut(s) 241
MhlI GDGCHC 1 cut(s) 825
MlsI TGGCCA 1 cut(s) 17
MluCI AATT 6 cut(s) 157, 636, 684, 708, 776, 855
MluNI TGGCCA 1 cut(s) 17
MlyI GAGTC 2 cut(s) 120, 330
MmeI TCCRAC 2 cut(s) 642, 798
Mox20I TGGCCA 1 cut(s) 17
Mph1103I ATGCAT 1 cut(s) 912
MreI CGCCGGCG 1 cut(s) 172
MroNI GCCGGC 1 cut(s) 172
MroXI GAANNNNTTC 1 cut(s) 489
MscI TGGCCA 1 cut(s) 17
MseI TTAA 2 cut(s) 635, 854
Msp20I TGGCCA 1 cut(s) 17
MspI CCGG 5 cut(s) 173, 288, 518, 617, 630
MspR9I CCNGG 3 cut(s) 275, 312, 617
MvaI CCWGG 2 cut(s) 275, 312
MwoI GCNNNNNNNGC 4 cut(s) 143, 146, 788, 923
NaeI GCCGGC 1 cut(s) 174
NciI CCSGG 1 cut(s) 617
NcoI CCATGG 1 cut(s) 248
NdeII GATC 1 cut(s) 241
NgoMIV GCCGGC 1 cut(s) 172
NlaIII CATG 3 cut(s) 252, 562, 625
NlaIV GGNNCC 3 cut(s) 73, 316, 328
NmuCI GTSAC 1 cut(s) 295
NsbI TGCGCA 1 cut(s) 575
NsiI ATGCAT 1 cut(s) 912
PceI AGGCCT 2 cut(s) 127, 266
PciSI GCTCTTC 1 cut(s) 360
PcsI WCGNNNNNNNCGW 1 cut(s) 176
PdiI GCCGGC 1 cut(s) 174
PdmI GAANNNNTTC 1 cut(s) 489
PfeI GAWTC 5 cut(s) 253, 668, 938, 962, 968
PkrI GCNGC 5 cut(s) 139, 142, 145, 148, 208
PleI GAGTC 2 cut(s) 119, 329
PpsI GAGTC 2 cut(s) 119, 329
Psp124BI GAGCTC 1 cut(s) 825
Psp6I CCWGG 2 cut(s) 273, 310
PspFI CCCAGC 1 cut(s) 926
PspGI CCWGG 2 cut(s) 273, 310
PspN4I GGNNCC 3 cut(s) 73, 316, 328
PspPI GGNCC 4 cut(s) 71, 271, 314, 725
PstNI CAGNNNCTG 1 cut(s) 920
PsuI RGATCY 1 cut(s) 241
RsaI GTAC 1 cut(s) 581
RsaNI GTAC 1 cut(s) 580
SacI GAGCTC 1 cut(s) 825
SapI GCTCTTC 1 cut(s) 360
SaqAI TTAA 2 cut(s) 635, 854
SatI GCNGC 5 cut(s) 138, 141, 144, 147, 207
Sau3AI GATC 1 cut(s) 241
Sau96I GGNCC 4 cut(s) 71, 271, 314, 725
SchI GAGTC 2 cut(s) 120, 330
ScrFI CCNGG 3 cut(s) 275, 312, 617
SduI GDGCHC 1 cut(s) 825
SexAI ACCWGGT 1 cut(s) 273
SfaNI GCATC 3 cut(s) 511, 880, 897
SgrAI CRCCGGYG 1 cut(s) 172
SinI GGWCC 2 cut(s) 71, 271
Sse9I AATT 6 cut(s) 157, 636, 684, 708, 776, 855
SseBI AGGCCT 2 cut(s) 127, 266
SsiI CCGC 3 cut(s) 140, 143, 146
SspI AATATT 1 cut(s) 870
SspMI CTAG 3 cut(s) 702, 944, 976
SstI GAGCTC 1 cut(s) 825
StuI AGGCCT 2 cut(s) 127, 266
StyD4I CCNGG 3 cut(s) 273, 310, 615
StyI CCWWGG 3 cut(s) 248, 267, 341
TaaI ACNGT 4 cut(s) 79, 194, 406, 609
TaqI TCGA 2 cut(s) 427, 839
TaqII GACCGA 1 cut(s) 362
TasI AATT 6 cut(s) 157, 636, 684, 708, 776, 855
TatI WGTACW 1 cut(s) 579
TauI GCSGC 3 cut(s) 143, 146, 149
TfiI GAWTC 5 cut(s) 253, 668, 938, 962, 968
Tru1I TTAA 2 cut(s) 635, 854
Tru9I TTAA 2 cut(s) 635, 854
TscAI CASTG 2 cut(s) 25, 82
TseFI GTSAC 1 cut(s) 295
TseI GCWGC 2 cut(s) 137, 206
Tsp45I GTSAC 1 cut(s) 295
TspDTI ATGAA 1 cut(s) 615
TspGWI ACGGA 1 cut(s) 919
TspRI CASTG 2 cut(s) 25, 82
VpaK11BI GGWCC 2 cut(s) 71, 271
XagI CCTNNNNNAGG 1 cut(s) 51
XapI RAATTY 1 cut(s) 684
XbaI TCTAGA 1 cut(s) 701
XmnI GAANNNNTTC 1 cut(s) 489
XspI CTAG 3 cut(s) 702, 944, 976
Zsp2I ATGCAT 1 cut(s) 912
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.