RLG00000005597

RNA splicing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0002800
Physical Location & Seq
Reverse (-)
192794 .. 195566
2773 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005597

Sequence Viewer

Length: 987 bp
ATGGCTTCTGCTTTGGCCACTTCCTTTTCTTCCCAATTGCTCCCTCGCGCCCCACCCAAAGGTCTCCCTTTGCTTCGTCCCACAGTCGCACCTGTGTCTGTAGCTGTGAGAGTCCGGGCTAGCAGGCCGTTATCGGCGGCGAAGAGTAATTCCAATACTCCGCCGCCGCCGACGACGACGAGCCCTAACAAAAGCAATAAAGCAGCAGCAGAAGAAGAAGGCGTTGAAGAAGTGGAAGAGGATCTACCCTGGATTCAAGAGAAGGCCTTGGACCTGGTGGAGTTCACCGGCTCTGTCACGCAGGCCATTCCTGGACCGAGAGTTGGCACCAGCTCTCTCCCTTGGATTTTGGCTCTTCCTCTCGCTTATGCCGGTCTCACTTTTGTCATCGCCGTTGTCAAGACCGTCAAAAAGTTCTCTTCCCCTCGACATAAACGCAAGAAACTGGTCAATAAAAATGCTATGCTATGCAAATCAATAGACGAATTGTTTCAGAATGGCCCGGACCAAATCACGCCTGATGCCCTGAAACAACTCGTGCAAAAGACAGGTTTTGGCATGGAGGAGATTTTGCGCAAGTACATCCGTTATACTTTGAATGAAAAGCCATTCAACCCAGACATGGTTTCCAATTTAATTCAGCTCAGGAAAGCTTCTTTGTTCGATGATTCTCAGGTGGCTGAAATTCTAAATGAAATTTCAAGAAGAATTGTGCGAGACAAAGGCCCAGTTGTAATGGATATGGCAGGTTATACTGAACGGGGTTTCAAGAGAAAATTAGCCGTTCAAGCCCTATTTGGAAAGGTGTTCTATCTGTCAGAGCTCCCAGAGTTCTGTTCGAGGGATAGCTCCTTAATTGTCAAAGAAATATTTGGTGTTACAGATGAAGATGCAGACAGATTACGGATACATACAGCCTCTGAAGCTGGGGATATGGAATCACTAAAAAAAAAGTTTGATGATTCAGATTCAGAAGATTCTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

329

Amino Acids

36.16

Weight (kDa)

8.67

Isoelectric Point (pI)

50.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARMH5 PF22915 183 - 274 1.4e-40 Armadillo-like helical domain-containing protein 5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 575
Acc36I ACCTGC 1 cut(s) 737
AccB1I GGYRCC 1 cut(s) 326
AccII CGCG 1 cut(s) 48
AciI CCGC 4 cut(s) 137, 161, 164, 167
AclWI GGATC 1 cut(s) 249
AcoI YGGCCR 1 cut(s) 15
AcsI RAATTY 2 cut(s) 684, 696
AcuI CTGAAG 1 cut(s) 942
AfaI GTAC 1 cut(s) 581
AfiI CCNNNNNNNGG 3 cut(s) 59, 323, 622
AgsI TTSAA 7 cut(s) 227, 257, 598, 613, 702, 769, 788
AjnI CCWGG 3 cut(s) 248, 273, 310
AluBI AGCT 8 cut(s) 104, 333, 643, 653, 823, 849, 926, 984
AluI AGCT 8 cut(s) 104, 333, 643, 653, 823, 849, 926, 984
Alw21I GWGCWC 1 cut(s) 825
Alw26I GTCTC 3 cut(s) 68, 380, 711
AlwI GGATC 1 cut(s) 249
AlwNI CAGNNNCTG 1 cut(s) 920
AoxI GGCC 6 cut(s) 15, 125, 264, 303, 499, 724
ApeKI GCWGC 2 cut(s) 203, 206
ApoI RAATTY 2 cut(s) 684, 696
Asp700I GAANNNNTTC 1 cut(s) 489
AspLEI GCGC 2 cut(s) 50, 576
AspS9I GGNCC 5 cut(s) 271, 314, 500, 505, 725
AsuC2I CCSGG 2 cut(s) 116, 503
AsuHPI GGTGA 1 cut(s) 277
AsuNHI GCTAGC 1 cut(s) 119
AvaII GGWCC 3 cut(s) 271, 314, 505
BalI TGGCCA 1 cut(s) 17
BanI GGYRCC 1 cut(s) 326
BanII GRGCYC 2 cut(s) 185, 825
BarI GAAGNNNNNNTAC 2 cut(s) 228, 260
BauI CACGAG 1 cut(s) 536
Bbv12I GWGCWC 1 cut(s) 825
BbvI GCAGC 2 cut(s) 215, 218
BceAI ACGGC 3 cut(s) 112, 377, 767
BciT130I CCWGG 3 cut(s) 250, 275, 312
BciVI GTATCC 1 cut(s) 900
BcnI CCSGG 2 cut(s) 116, 503
BcoDI GTCTC 3 cut(s) 68, 380, 711
BfaI CTAG 3 cut(s) 120, 981, 985
BfmI CTRYAG 1 cut(s) 99
BfuAI ACCTGC 1 cut(s) 737
BfuI GTATCC 1 cut(s) 900
BisI GCNGC 5 cut(s) 138, 164, 167, 204, 207
BlsI GCNGC 5 cut(s) 139, 165, 168, 205, 208
Bme1390I CCNGG 5 cut(s) 116, 250, 275, 312, 503
Bme18I GGWCC 3 cut(s) 271, 314, 505
BmgT120I GGNCC 5 cut(s) 271, 314, 500, 505, 725
BmiI GGNNCC 1 cut(s) 328
BmrFI CCNGG 5 cut(s) 116, 250, 275, 312, 503
BmrI ACTGGG 1 cut(s) 722
BmsI GCATC 2 cut(s) 511, 880
BmtI GCTAGC 1 cut(s) 123
BmuI ACTGGG 1 cut(s) 722
Bpu10I CCTNAGC 1 cut(s) 644
BpuMI CCSGG 2 cut(s) 116, 503
BsaI GGTCTC 2 cut(s) 68, 380
BsaJI CCNNGG 3 cut(s) 248, 267, 341
Bsc4I CCNNNNNNNGG 3 cut(s) 59, 323, 622
Bse118I RCCGGY 2 cut(s) 287, 371
Bse1I ACTGG 2 cut(s) 450, 728
BseBI CCWGG 3 cut(s) 250, 275, 312
BseDI CCNNGG 3 cut(s) 248, 267, 341
BseGI GGATG 1 cut(s) 582
BseLI CCNNNNNNNGG 3 cut(s) 59, 323, 622
BseMII CTCAG 2 cut(s) 658, 686
BseNI ACTGG 2 cut(s) 450, 728
BseRI GAGGAG 1 cut(s) 578
BseXI GCAGC 2 cut(s) 215, 218
BseYI CCCAGC 1 cut(s) 926
Bsh1236I CGCG 1 cut(s) 48
BshFI GGCC 6 cut(s) 17, 127, 266, 305, 501, 726
BshNI GGYRCC 1 cut(s) 326
BsiHKAI GWGCWC 1 cut(s) 825
BsiSI CCGG 4 cut(s) 115, 288, 372, 503
BslFI GGGAC 1 cut(s) 63
BslI CCNNNNNNNGG 3 cut(s) 59, 323, 622
BsmAI GTCTC 3 cut(s) 68, 380, 711
BsmFI GGGAC 1 cut(s) 63
BsnI GGCC 6 cut(s) 17, 127, 266, 305, 501, 726
Bso31I GGTCTC 2 cut(s) 68, 380
Bsp1286I GDGCHC 2 cut(s) 185, 825
Bsp143I GATC 1 cut(s) 241
BspACI CCGC 4 cut(s) 137, 161, 164, 167
BspANI GGCC 6 cut(s) 17, 127, 266, 305, 501, 726
BspCNI CTCAG 2 cut(s) 657, 685
BspFNI CGCG 1 cut(s) 48
BspLI GGNNCC 1 cut(s) 328
BspMI ACCTGC 1 cut(s) 737
BspOI GCTAGC 1 cut(s) 123
BspPI GGATC 1 cut(s) 249
BspQI GCTCTTC 1 cut(s) 360
BspT107I GGYRCC 1 cut(s) 326
BspTNI GGTCTC 2 cut(s) 68, 380
BsrFI RCCGGY 2 cut(s) 287, 371
BsrI ACTGG 2 cut(s) 450, 728
BssAI RCCGGY 2 cut(s) 287, 371
BssECI CCNNGG 3 cut(s) 248, 267, 341
BssMI GATC 1 cut(s) 241
BssSI CACGAG 1 cut(s) 536
BssT1I CCWWGG 2 cut(s) 267, 341
Bst2BI CACGAG 1 cut(s) 536
Bst2UI CCWGG 3 cut(s) 250, 275, 312
Bst4CI ACNGT 2 cut(s) 85, 406
Bst6I CTCTTC 4 cut(s) 137, 231, 360, 424
BstC8I GCNNGC 3 cut(s) 121, 125, 303
BstDEI CTNAG 2 cut(s) 644, 672
BstF5I GGATG 1 cut(s) 582
BstFNI CGCG 1 cut(s) 48
BstHHI GCGC 2 cut(s) 50, 576
BstKTI GATC 1 cut(s) 244
BstMAI GTCTC 3 cut(s) 68, 380, 711
BstMBI GATC 1 cut(s) 241
BstMWI GCNNNNNNNGC 2 cut(s) 788, 923
BstNI CCWGG 3 cut(s) 250, 275, 312
BstSCI CCNGG 5 cut(s) 114, 248, 273, 310, 501
BstSFI CTRYAG 1 cut(s) 99
BstUI CGCG 1 cut(s) 48
BstV1I GCAGC 2 cut(s) 215, 218
BstX2I RGATCY 1 cut(s) 241
BstYI RGATCY 1 cut(s) 241
BsuI GTATCC 1 cut(s) 900
BsuRI GGCC 6 cut(s) 17, 127, 266, 305, 501, 726
BtgZI GCGATG 1 cut(s) 373
BtsCI GGATG 1 cut(s) 582
BveI ACCTGC 1 cut(s) 737
Cac8I GCNNGC 3 cut(s) 121, 125, 303
CaiI CAGNNNCTG 1 cut(s) 920
CfoI GCGC 2 cut(s) 50, 576
Cfr10I RCCGGY 2 cut(s) 287, 371
Cfr13I GGNCC 5 cut(s) 271, 314, 500, 505, 725
CsiI ACCWGGT 1 cut(s) 273
Csp6I GTAC 1 cut(s) 580
CviAII CATG 2 cut(s) 559, 622
CviQI GTAC 1 cut(s) 580
DdeI CTNAG 2 cut(s) 644, 672
DpnI GATC 1 cut(s) 243
DpnII GATC 1 cut(s) 241
EaeI YGGCCR 1 cut(s) 15
Eam1104I CTCTTC 4 cut(s) 137, 231, 360, 424
EarI CTCTTC 4 cut(s) 137, 231, 360, 424
EciI GGCGGA 1 cut(s) 150
Ecl136II GAGCTC 1 cut(s) 823
Eco130I CCWWGG 2 cut(s) 267, 341
Eco147I AGGCCT 1 cut(s) 266
Eco24I GRGCYC 2 cut(s) 185, 825
Eco31I GGTCTC 2 cut(s) 68, 380
Eco47I GGWCC 3 cut(s) 271, 314, 505
Eco53kI GAGCTC 1 cut(s) 823
Eco57I CTGAAG 1 cut(s) 942
EcoICRI GAGCTC 1 cut(s) 823
EcoRII CCWGG 3 cut(s) 248, 273, 310
EcoT14I CCWWGG 2 cut(s) 267, 341
EcoT38I GRGCYC 2 cut(s) 185, 825
ErhI CCWWGG 2 cut(s) 267, 341
FaeI CATG 2 cut(s) 562, 625
FaqI GGGAC 1 cut(s) 63
FatI CATG 2 cut(s) 558, 621
Fnu4HI GCNGC 5 cut(s) 138, 164, 167, 204, 207
FokI GGATG 1 cut(s) 569
FriOI GRGCYC 2 cut(s) 185, 825
Fsp4HI GCNGC 5 cut(s) 138, 164, 167, 204, 207
FspBI CTAG 3 cut(s) 120, 981, 985
FspI TGCGCA 1 cut(s) 575
GlaI GCGC 2 cut(s) 49, 575
GluI GCNGC 5 cut(s) 138, 164, 167, 204, 207
GsaI CCCAGC 1 cut(s) 930
HaeIII GGCC 6 cut(s) 17, 127, 266, 305, 501, 726
HapII CCGG 4 cut(s) 115, 288, 372, 503
HhaI GCGC 2 cut(s) 50, 576
Hin1II CATG 2 cut(s) 562, 625
Hin6I GCGC 2 cut(s) 48, 574
HinP1I GCGC 2 cut(s) 48, 574
HindIII AAGCTT 1 cut(s) 651
HinfI GANTC 7 cut(s) 111, 253, 668, 938, 962, 968, 977
HpaII CCGG 4 cut(s) 115, 288, 372, 503
HphI GGTGA 1 cut(s) 277
Hpy166II GTNNAC 1 cut(s) 285
Hpy188I TCNGA 5 cut(s) 495, 820, 922, 967, 973
Hpy188III TCNNGA 5 cut(s) 257, 400, 646, 702, 769
Hpy8I GTNNAC 1 cut(s) 285
Hpy99I CGWCG 3 cut(s) 175, 178, 181
HpyAV CCTTC 2 cut(s) 212, 256
HpyCH4III ACNGT 2 cut(s) 85, 406
HpyCH4V TGCA 3 cut(s) 471, 541, 893
HpyF10VI GCNNNNNNNGC 2 cut(s) 788, 923
HpyF3I CTNAG 2 cut(s) 644, 672
Hsp92II CATG 2 cut(s) 562, 625
HspAI GCGC 2 cut(s) 48, 574
Kzo9I GATC 1 cut(s) 241
LguI GCTCTTC 1 cut(s) 360
LmnI GCTCC 3 cut(s) 45, 828, 854
Lsp1109I GCAGC 2 cut(s) 215, 218
LweI GCATC 2 cut(s) 511, 880
MabI ACCWGGT 1 cut(s) 273
MaeI CTAG 3 cut(s) 120, 981, 985
MaeIII GTNAC 2 cut(s) 295, 877
MalI GATC 1 cut(s) 243
MboI GATC 1 cut(s) 241
MfeI CAATTG 1 cut(s) 35
MflI RGATCY 1 cut(s) 241
MhlI GDGCHC 2 cut(s) 185, 825
MlsI TGGCCA 1 cut(s) 17
MluNI TGGCCA 1 cut(s) 17
MlyI GAGTC 1 cut(s) 120
MnlI CCTC 7 cut(s) 54, 232, 369, 435, 556, 834, 928
Mox20I TGGCCA 1 cut(s) 17
MroXI GAANNNNTTC 1 cut(s) 489
MscI TGGCCA 1 cut(s) 17
MseI TTAA 2 cut(s) 635, 854
Msp20I TGGCCA 1 cut(s) 17
MspI CCGG 4 cut(s) 115, 288, 372, 503
MspR9I CCNGG 5 cut(s) 116, 250, 275, 312, 503
MunI CAATTG 1 cut(s) 35
MvaI CCWGG 3 cut(s) 250, 275, 312
MvnI CGCG 1 cut(s) 48
MwoI GCNNNNNNNGC 2 cut(s) 788, 923
NciI CCSGG 2 cut(s) 116, 503
NdeII GATC 1 cut(s) 241
NheI GCTAGC 1 cut(s) 119
NlaIII CATG 2 cut(s) 562, 625
NlaIV GGNNCC 1 cut(s) 328
NmuCI GTSAC 1 cut(s) 295
NsbI TGCGCA 1 cut(s) 575
PceI AGGCCT 1 cut(s) 266
PciSI GCTCTTC 1 cut(s) 360
PdmI GAANNNNTTC 1 cut(s) 489
PfeI GAWTC 6 cut(s) 253, 668, 938, 962, 968, 977
PfoI TCCNGGA 1 cut(s) 310
PkrI GCNGC 5 cut(s) 139, 165, 168, 205, 208
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
Psp124BI GAGCTC 1 cut(s) 825
Psp6I CCWGG 3 cut(s) 248, 273, 310
PspFI CCCAGC 1 cut(s) 926
PspGI CCWGG 3 cut(s) 248, 273, 310
PspN4I GGNNCC 1 cut(s) 328
PspPI GGNCC 5 cut(s) 271, 314, 500, 505, 725
PstNI CAGNNNCTG 1 cut(s) 920
PsuI RGATCY 1 cut(s) 241
RsaI GTAC 1 cut(s) 581
RsaNI GTAC 1 cut(s) 580
SacI GAGCTC 1 cut(s) 825
SapI GCTCTTC 1 cut(s) 360
SaqAI TTAA 2 cut(s) 635, 854
SatI GCNGC 5 cut(s) 138, 164, 167, 204, 207
Sau3AI GATC 1 cut(s) 241
Sau96I GGNCC 5 cut(s) 271, 314, 500, 505, 725
SchI GAGTC 1 cut(s) 120
ScrFI CCNGG 5 cut(s) 116, 250, 275, 312, 503
SduI GDGCHC 2 cut(s) 185, 825
SexAI ACCWGGT 1 cut(s) 273
SfaNI GCATC 2 cut(s) 511, 880
SfcI CTRYAG 1 cut(s) 99
SinI GGWCC 3 cut(s) 271, 314, 505
SseBI AGGCCT 1 cut(s) 266
SsiI CCGC 4 cut(s) 137, 161, 164, 167
SspI AATATT 1 cut(s) 870
SspMI CTAG 3 cut(s) 120, 981, 985
SstI GAGCTC 1 cut(s) 825
StuI AGGCCT 1 cut(s) 266
StyD4I CCNGG 5 cut(s) 114, 248, 273, 310, 501
StyI CCWWGG 2 cut(s) 267, 341
TaaI ACNGT 2 cut(s) 85, 406
TaqI TCGA 3 cut(s) 427, 663, 839
TaqII GACCGA 1 cut(s) 331
TatI WGTACW 1 cut(s) 579
TauI GCSGC 3 cut(s) 140, 166, 169
TfiI GAWTC 6 cut(s) 253, 668, 938, 962, 968, 977
Tru1I TTAA 2 cut(s) 635, 854
Tru9I TTAA 2 cut(s) 635, 854
TseFI GTSAC 1 cut(s) 295
TseI GCWGC 2 cut(s) 203, 206
Tsp45I GTSAC 1 cut(s) 295
TspDTI ATGAA 3 cut(s) 615, 708, 900
TspGWI ACGGA 2 cut(s) 575, 919
VpaK11BI GGWCC 3 cut(s) 271, 314, 505
XapI RAATTY 2 cut(s) 684, 696
XmnI GAANNNNTTC 1 cut(s) 489
XspI CTAG 3 cut(s) 120, 981, 985
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.