Rh5CG543000

Heparan-alpha-glucosaminide N-acetyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0002800
Physical Location & Seq
Reverse (-)
75811937 .. 75818693
6757 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG543000.1

Sequence Viewer

Length: 333 bp
ATGAGATGGATGGGCATTCTACAGAGAATTGCAATAGGATATTTAGTAGCTGCCTTGCGCGAGATTTGGCTAAAGGGTGATGGTACTATTAGTTCAGGATCATCTTTGCTCAGGAAGTATAAACTTCAGTTGTCATCAGAACAGAGTTCTGCACTAGACTATGTCATCCACGTCTGTCGTAGTCTAGGCCTCGCCTTGGACTTATTTGATATGCATATGAACAAGGCTCTCTACACATTCAGTGGAACATGTCTTGAAGCGTTGAGTCCTTGGAGACACAAGTTTTCTAGATTGTGCTTGTGGCCACTCAACCCATATGAGCCAGATAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00531 ko01100 ko04142 map00531 map01100 map04142
Pfam Domains
Protein Families
DUF1624

Protein Analysis

110

Amino Acids

12.62

Weight (kDa)

9.15

Isoelectric Point (pI)

68.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 60
AclWI GGATC 1 cut(s) 106
AcoI YGGCCR 1 cut(s) 302
AcuI CTGAAG 1 cut(s) 110
AfaI GTAC 1 cut(s) 85
AfiI CCNNNNNNNGG 1 cut(s) 196
AflIII ACRYGT 1 cut(s) 248
AgsI TTSAA 1 cut(s) 257
AjiI CACGTC 1 cut(s) 172
AluBI AGCT 1 cut(s) 50
AluI AGCT 1 cut(s) 50
Alw26I GTCTC 1 cut(s) 268
AlwI GGATC 1 cut(s) 106
AoxI GGCC 2 cut(s) 187, 302
ApeKI GCWGC 1 cut(s) 50
AspLEI GCGC 1 cut(s) 60
AsuHPI GGTGA 1 cut(s) 89
BalI TGGCCA 1 cut(s) 304
BbvI GCAGC 1 cut(s) 37
BccI CCATC 2 cut(s) 4, 74
BcoDI GTCTC 1 cut(s) 268
BfaI CTAG 3 cut(s) 155, 185, 288
BfmI CTRYAG 1 cut(s) 20
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
BmgBI CACGTC 1 cut(s) 172
Bpu10I CCTNAGC 1 cut(s) 110
BsaJI CCNNGG 2 cut(s) 195, 269
Bsc4I CCNNNNNNNGG 1 cut(s) 196
BseDI CCNNGG 2 cut(s) 195, 269
BseGI GGATG 2 cut(s) 15, 165
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMII CTCAG 1 cut(s) 124
BseXI GCAGC 1 cut(s) 37
BsgI GTGCAG 1 cut(s) 135
Bsh1236I CGCG 1 cut(s) 60
BshFI GGCC 2 cut(s) 189, 304
BslI CCNNNNNNNGG 1 cut(s) 196
BsmAI GTCTC 1 cut(s) 268
BsmI GAATGC 1 cut(s) 15
BsnI GGCC 2 cut(s) 189, 304
Bsp143I GATC 1 cut(s) 98
BspANI GGCC 2 cut(s) 189, 304
BspCNI CTCAG 1 cut(s) 123
BspFNI CGCG 1 cut(s) 60
BspPI GGATC 1 cut(s) 106
BssECI CCNNGG 2 cut(s) 195, 269
BssMI GATC 1 cut(s) 98
BssT1I CCWWGG 2 cut(s) 195, 269
BstDEI CTNAG 1 cut(s) 110
BstF5I GGATG 2 cut(s) 15, 165
BstFNI CGCG 1 cut(s) 60
BstHHI GCGC 1 cut(s) 60
BstKTI GATC 1 cut(s) 101
BstMAI GTCTC 1 cut(s) 268
BstMBI GATC 1 cut(s) 98
BstNSI RCATGY 1 cut(s) 252
BstSFI CTRYAG 1 cut(s) 20
BstUI CGCG 1 cut(s) 60
BstV1I GCAGC 1 cut(s) 37
BsuRI GGCC 2 cut(s) 189, 304
BtrI CACGTC 1 cut(s) 172
BtsCI GGATG 2 cut(s) 15, 165
BtsIMutI CAGTG 1 cut(s) 247
CfoI GCGC 1 cut(s) 60
Csp6I GTAC 1 cut(s) 84
CviAII CATG 1 cut(s) 249
CviJI RGCY 6 cut(s) 50, 70, 189, 227, 304, 322
CviKI_1 RGCY 6 cut(s) 50, 70, 189, 227, 304, 322
CviQI GTAC 1 cut(s) 84
DdeI CTNAG 1 cut(s) 110
DpnI GATC 1 cut(s) 100
DpnII GATC 1 cut(s) 98
EaeI YGGCCR 1 cut(s) 302
Eco130I CCWWGG 2 cut(s) 195, 269
Eco147I AGGCCT 1 cut(s) 189
Eco57I CTGAAG 1 cut(s) 110
EcoT14I CCWWGG 2 cut(s) 195, 269
EcoT22I ATGCAT 1 cut(s) 216
ErhI CCWWGG 2 cut(s) 195, 269
FaeI CATG 1 cut(s) 252
FaiI YATR 8 cut(s) 120, 162, 212, 216, 218, 250, 316, 318
FatI CATG 1 cut(s) 248
FauNDI CATATG 2 cut(s) 216, 316
Fnu4HI GCNGC 1 cut(s) 51
FokI GGATG 2 cut(s) 22, 152
Fsp4HI GCNGC 1 cut(s) 51
FspBI CTAG 3 cut(s) 155, 185, 288
GlaI GCGC 1 cut(s) 59
GluI GCNGC 1 cut(s) 51
HaeIII GGCC 2 cut(s) 189, 304
HhaI GCGC 1 cut(s) 60
Hin1II CATG 1 cut(s) 252
Hin6I GCGC 1 cut(s) 58
HinP1I GCGC 1 cut(s) 58
HinfI GANTC 1 cut(s) 265
HphI GGTGA 1 cut(s) 89
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 4 cut(s) 96, 112, 254, 288
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 3 cut(s) 32, 152, 214
HpyF3I CTNAG 1 cut(s) 110
HpySE526I ACGT 1 cut(s) 171
Hsp92II CATG 1 cut(s) 252
HspAI GCGC 1 cut(s) 58
Kzo9I GATC 1 cut(s) 98
LpnPI CCDG 2 cut(s) 81, 97
Lsp1109I GCAGC 1 cut(s) 37
MaeI CTAG 3 cut(s) 155, 185, 288
MaeII ACGT 1 cut(s) 171
MalI GATC 1 cut(s) 100
MboI GATC 1 cut(s) 98
MlsI TGGCCA 1 cut(s) 304
MluCI AATT 1 cut(s) 27
MluNI TGGCCA 1 cut(s) 304
MlyI GAGTC 1 cut(s) 274
MnlI CCTC 1 cut(s) 200
Mox20I TGGCCA 1 cut(s) 304
Mph1103I ATGCAT 1 cut(s) 216
MscI TGGCCA 1 cut(s) 304
Msp20I TGGCCA 1 cut(s) 304
Mva1269I GAATGC 1 cut(s) 15
MvnI CGCG 1 cut(s) 60
NdeI CATATG 2 cut(s) 216, 316
NdeII GATC 1 cut(s) 98
NlaIII CATG 1 cut(s) 252
NsiI ATGCAT 1 cut(s) 216
NspI RCATGY 1 cut(s) 252
PceI AGGCCT 1 cut(s) 189
PciI ACATGT 1 cut(s) 248
PctI GAATGC 1 cut(s) 15
PflFI GACNNNGTC 1 cut(s) 161
PkrI GCNGC 1 cut(s) 52
PleI GAGTC 1 cut(s) 273
PpsI GAGTC 1 cut(s) 273
PscI ACATGT 1 cut(s) 248
PsrI GAACNNNNNNTAC 2 cut(s) 76, 108
PsyI GACNNNGTC 1 cut(s) 161
RsaI GTAC 1 cut(s) 85
RsaNI GTAC 1 cut(s) 84
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 1 cut(s) 98
SchI GAGTC 1 cut(s) 274
SetI ASST 2 cut(s) 52, 174
SfcI CTRYAG 1 cut(s) 20
Sse9I AATT 1 cut(s) 27
SseBI AGGCCT 1 cut(s) 189
SspMI CTAG 3 cut(s) 155, 185, 288
StuI AGGCCT 1 cut(s) 189
StyI CCWWGG 2 cut(s) 195, 269
TaiI ACGT 1 cut(s) 174
TasI AATT 1 cut(s) 27
TscAI CASTG 1 cut(s) 247
TseI GCWGC 1 cut(s) 50
TspDTI ATGAA 1 cut(s) 233
TspRI CASTG 1 cut(s) 247
Tth111I GACNNNGTC 1 cut(s) 161
XbaI TCTAGA 1 cut(s) 287
XceI RCATGY 1 cut(s) 252
XspI CTAG 3 cut(s) 155, 185, 288
Zsp2I ATGCAT 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.