RchiOBHm_Chr4g0447201

RNA splicing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0002800
Physical Location & Seq
Forward (+)
67014468 .. 67017614
3147 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41467

Sequence Viewer

Length: 984 bp
ATGGCTTCCGCTTTGGCCACTTCCTTTGCTTCCCAATTGCTCCCTCGCGCCCCACCCAAAGGTCTCCCTTTGCTTCGTCCCACAGTAGCACCTGTGTCTGTAGCTGTGAGAGTCCGAGCTAGCAGGCCGTTATCCGCTGTGGCGGCGGCGAAGAGTAATTCCACTCCTCCGCCGACGAGCCCTAACAAAAGCAGTAAAGCAGCAGCAGAAGAAGAAGCCGTTGAAGAAGTGGAAGAGGATCTACCCTGGATTCAAGAGAAGGCCTTGGACCTGGTGGAGTTCACCGGCTCTGTCACGCAGGCCATTCCTGGACCCAGAGTTGGCACCAGCTCTCTCCCTTGGATTTTGGCTCTTCCTCTCGCTTATGCCGGTCTCACTTTTGTCATCGCCGTTGTCAAGACCGTCAAAAAGTTCTCTTCCCCTCGACATAAACGCAAGAAACTGGTCAATAAAAATGCTATGCTATGCAAATCAATAGACGAAATGTTTCAGAATGGCTCCGACCAAATCACGCCTGATGCCCTGAAACAACTCGTGCAAAAGACAGGTTTTGGCATGGAGGAGATTTTGCGCAAGTACATCCGTTATACTTTGAATGAAAAGCCATTCAACCCAGACATGGTTTCCAATTTAATTCAGCTCAGGAAAGCTTCTTTATTTGATGATTCTCAGGTGGCTGAAATTCTAAATGAAATTTCAAGAAGAATTGTGCGAGACAAAGGCCCAGTTGTAATGGATATGGCAGGTTATACTGAACGGGGTTTCAAAAGAAAATTAGCCGTTCAAGCCCTATTTGGAAAGGTGTTCTATCTGTCAGAGCTCCCAGAGTTCTGTTCGAGGGATAGCTCCTTAATTGTCAAAGAAATATTTGGTGTTACAGATGAAGATGCAGACAGATTACGGATACATACAGCCTCTGAAGCTGGGGATATAGAATCACTGAAAGAAAAGTTTGATGTTTCAGATTCAGAAGATTCTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

327

Amino Acids

35.94

Weight (kDa)

8.36

Isoelectric Point (pI)

50.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARMH5 PF22915 182 - 273 1.4e-40 Armadillo-like helical domain-containing protein 5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 572
Acc36I ACCTGC 1 cut(s) 734
AccB1I GGYRCC 1 cut(s) 323
AccII CGCG 1 cut(s) 48
AciI CCGC 5 cut(s) 9, 135, 143, 146, 170
AclWI GGATC 1 cut(s) 246
AcoI YGGCCR 1 cut(s) 15
AcsI RAATTY 2 cut(s) 681, 693
AcuI CTGAAG 1 cut(s) 939
AfaI GTAC 1 cut(s) 578
AfiI CCNNNNNNNGG 3 cut(s) 59, 320, 619
AgsI TTSAA 7 cut(s) 224, 254, 595, 610, 699, 766, 785
AjnI CCWGG 3 cut(s) 245, 270, 307
AluBI AGCT 9 cut(s) 104, 119, 330, 640, 650, 820, 846, 923, 981
AluI AGCT 9 cut(s) 104, 119, 330, 640, 650, 820, 846, 923, 981
Alw21I GWGCWC 1 cut(s) 822
Alw26I GTCTC 3 cut(s) 68, 377, 708
AlwI GGATC 1 cut(s) 246
AlwNI CAGNNNCTG 1 cut(s) 917
AoxI GGCC 5 cut(s) 15, 125, 261, 300, 721
ApeKI GCWGC 2 cut(s) 200, 203
ApoI RAATTY 2 cut(s) 681, 693
Asp700I GAANNNNTTC 1 cut(s) 486
AspLEI GCGC 2 cut(s) 50, 573
AspS9I GGNCC 3 cut(s) 268, 311, 722
AsuHPI GGTGA 1 cut(s) 274
AsuNHI GCTAGC 1 cut(s) 119
AvaII GGWCC 2 cut(s) 268, 311
BalI TGGCCA 1 cut(s) 17
BanI GGYRCC 1 cut(s) 323
BanII GRGCYC 2 cut(s) 182, 822
BarI GAAGNNNNNNTAC 2 cut(s) 225, 257
BauI CACGAG 1 cut(s) 533
Bbv12I GWGCWC 1 cut(s) 822
BbvI GCAGC 2 cut(s) 212, 215
BceAI ACGGC 4 cut(s) 112, 203, 374, 764
BciT130I CCWGG 3 cut(s) 247, 272, 309
BciVI GTATCC 1 cut(s) 897
BcoDI GTCTC 3 cut(s) 68, 377, 708
BfaI CTAG 3 cut(s) 120, 978, 982
BfmI CTRYAG 1 cut(s) 99
BfuAI ACCTGC 1 cut(s) 734
BfuI GTATCC 1 cut(s) 897
BisI GCNGC 4 cut(s) 144, 147, 201, 204
BlsI GCNGC 4 cut(s) 145, 148, 202, 205
Bme1390I CCNGG 3 cut(s) 247, 272, 309
Bme18I GGWCC 2 cut(s) 268, 311
BmgT120I GGNCC 3 cut(s) 268, 311, 722
BmiI GGNNCC 3 cut(s) 313, 325, 499
BmrFI CCNGG 3 cut(s) 247, 272, 309
BmrI ACTGGG 1 cut(s) 719
BmsI GCATC 2 cut(s) 508, 877
BmtI GCTAGC 1 cut(s) 123
BmuI ACTGGG 1 cut(s) 719
Bpu10I CCTNAGC 1 cut(s) 641
BsaI GGTCTC 2 cut(s) 68, 377
BsaJI CCNNGG 3 cut(s) 245, 264, 338
Bsc4I CCNNNNNNNGG 3 cut(s) 59, 320, 619
Bse118I RCCGGY 2 cut(s) 284, 368
Bse1I ACTGG 2 cut(s) 447, 725
BseBI CCWGG 3 cut(s) 247, 272, 309
BseDI CCNNGG 3 cut(s) 245, 264, 338
BseGI GGATG 1 cut(s) 579
BseLI CCNNNNNNNGG 3 cut(s) 59, 320, 619
BseMII CTCAG 2 cut(s) 655, 683
BseNI ACTGG 2 cut(s) 447, 725
BseRI GAGGAG 2 cut(s) 156, 575
BseXI GCAGC 2 cut(s) 212, 215
BseYI CCCAGC 1 cut(s) 923
Bsh1236I CGCG 1 cut(s) 48
BshFI GGCC 5 cut(s) 17, 127, 263, 302, 723
BshNI GGYRCC 1 cut(s) 323
BsiHKAI GWGCWC 1 cut(s) 822
BsiSI CCGG 2 cut(s) 285, 369
BslFI GGGAC 1 cut(s) 63
BslI CCNNNNNNNGG 3 cut(s) 59, 320, 619
BsmAI GTCTC 3 cut(s) 68, 377, 708
BsmFI GGGAC 1 cut(s) 63
BsnI GGCC 5 cut(s) 17, 127, 263, 302, 723
Bso31I GGTCTC 2 cut(s) 68, 377
Bsp1286I GDGCHC 2 cut(s) 182, 822
Bsp143I GATC 1 cut(s) 238
BspACI CCGC 5 cut(s) 9, 135, 143, 146, 170
BspANI GGCC 5 cut(s) 17, 127, 263, 302, 723
BspCNI CTCAG 2 cut(s) 654, 682
BspFNI CGCG 1 cut(s) 48
BspLI GGNNCC 3 cut(s) 313, 325, 499
BspMI ACCTGC 1 cut(s) 734
BspOI GCTAGC 1 cut(s) 123
BspPI GGATC 1 cut(s) 246
BspQI GCTCTTC 1 cut(s) 357
BspT107I GGYRCC 1 cut(s) 323
BspTNI GGTCTC 2 cut(s) 68, 377
BsrFI RCCGGY 2 cut(s) 284, 368
BsrI ACTGG 2 cut(s) 447, 725
BssAI RCCGGY 2 cut(s) 284, 368
BssECI CCNNGG 3 cut(s) 245, 264, 338
BssMI GATC 1 cut(s) 238
BssSI CACGAG 1 cut(s) 533
BssT1I CCWWGG 2 cut(s) 264, 338
Bst2BI CACGAG 1 cut(s) 533
Bst2UI CCWGG 3 cut(s) 247, 272, 309
Bst4CI ACNGT 2 cut(s) 85, 403
Bst6I CTCTTC 4 cut(s) 146, 228, 357, 421
BstC8I GCNNGC 3 cut(s) 121, 125, 300
BstDEI CTNAG 2 cut(s) 641, 669
BstF5I GGATG 1 cut(s) 579
BstFNI CGCG 1 cut(s) 48
BstHHI GCGC 2 cut(s) 50, 573
BstKTI GATC 1 cut(s) 241
BstMAI GTCTC 3 cut(s) 68, 377, 708
BstMBI GATC 1 cut(s) 238
BstMWI GCNNNNNNNGC 3 cut(s) 143, 785, 920
BstNI CCWGG 3 cut(s) 247, 272, 309
BstSCI CCNGG 3 cut(s) 245, 270, 307
BstSFI CTRYAG 1 cut(s) 99
BstUI CGCG 1 cut(s) 48
BstV1I GCAGC 2 cut(s) 212, 215
BstX2I RGATCY 1 cut(s) 238
BstYI RGATCY 1 cut(s) 238
BsuI GTATCC 1 cut(s) 897
BsuRI GGCC 5 cut(s) 17, 127, 263, 302, 723
BtgZI GCGATG 1 cut(s) 370
BtsCI GGATG 1 cut(s) 579
BtsIMutI CAGTG 1 cut(s) 938
BveI ACCTGC 1 cut(s) 734
Cac8I GCNNGC 3 cut(s) 121, 125, 300
CaiI CAGNNNCTG 1 cut(s) 917
CfoI GCGC 2 cut(s) 50, 573
Cfr10I RCCGGY 2 cut(s) 284, 368
Cfr13I GGNCC 3 cut(s) 268, 311, 722
CsiI ACCWGGT 1 cut(s) 270
Csp6I GTAC 1 cut(s) 577
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CviAII CATG 2 cut(s) 556, 619
CviQI GTAC 1 cut(s) 577
DdeI CTNAG 2 cut(s) 641, 669
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
EaeI YGGCCR 1 cut(s) 15
Eam1104I CTCTTC 4 cut(s) 146, 228, 357, 421
EarI CTCTTC 4 cut(s) 146, 228, 357, 421
EciI GGCGGA 1 cut(s) 159
Ecl136II GAGCTC 1 cut(s) 820
Eco130I CCWWGG 2 cut(s) 264, 338
Eco147I AGGCCT 1 cut(s) 263
Eco24I GRGCYC 2 cut(s) 182, 822
Eco31I GGTCTC 2 cut(s) 68, 377
Eco47I GGWCC 2 cut(s) 268, 311
Eco53kI GAGCTC 1 cut(s) 820
Eco57I CTGAAG 1 cut(s) 939
EcoICRI GAGCTC 1 cut(s) 820
EcoRII CCWGG 3 cut(s) 245, 270, 307
EcoT14I CCWWGG 2 cut(s) 264, 338
EcoT38I GRGCYC 2 cut(s) 182, 822
ErhI CCWWGG 2 cut(s) 264, 338
FaeI CATG 2 cut(s) 559, 622
FaqI GGGAC 1 cut(s) 63
FatI CATG 2 cut(s) 555, 618
Fnu4HI GCNGC 4 cut(s) 144, 147, 201, 204
FokI GGATG 1 cut(s) 566
FriOI GRGCYC 2 cut(s) 182, 822
Fsp4HI GCNGC 4 cut(s) 144, 147, 201, 204
FspBI CTAG 3 cut(s) 120, 978, 982
FspI TGCGCA 1 cut(s) 572
GlaI GCGC 2 cut(s) 49, 572
GluI GCNGC 4 cut(s) 144, 147, 201, 204
GsaI CCCAGC 1 cut(s) 927
HaeIII GGCC 5 cut(s) 17, 127, 263, 302, 723
HapII CCGG 2 cut(s) 285, 369
HhaI GCGC 2 cut(s) 50, 573
Hin1II CATG 2 cut(s) 559, 622
Hin6I GCGC 2 cut(s) 48, 571
HinP1I GCGC 2 cut(s) 48, 571
HindIII AAGCTT 1 cut(s) 648
HinfI GANTC 6 cut(s) 111, 250, 665, 935, 965, 974
HpaII CCGG 2 cut(s) 285, 369
HphI GGTGA 1 cut(s) 274
Hpy166II GTNNAC 1 cut(s) 282
Hpy188I TCNGA 7 cut(s) 116, 492, 502, 817, 919, 964, 970
Hpy188III TCNNGA 4 cut(s) 254, 397, 643, 699
Hpy8I GTNNAC 1 cut(s) 282
Hpy99I CGWCG 1 cut(s) 178
HpyAV CCTTC 1 cut(s) 253
HpyCH4III ACNGT 2 cut(s) 85, 403
HpyCH4V TGCA 3 cut(s) 468, 538, 890
HpyF10VI GCNNNNNNNGC 3 cut(s) 143, 785, 920
HpyF3I CTNAG 2 cut(s) 641, 669
Hsp92II CATG 2 cut(s) 559, 622
HspAI GCGC 2 cut(s) 48, 571
Kzo9I GATC 1 cut(s) 238
LguI GCTCTTC 1 cut(s) 357
LmnI GCTCC 4 cut(s) 45, 503, 825, 851
Lsp1109I GCAGC 2 cut(s) 212, 215
LweI GCATC 2 cut(s) 508, 877
MabI ACCWGGT 1 cut(s) 270
MaeI CTAG 3 cut(s) 120, 978, 982
MaeIII GTNAC 2 cut(s) 292, 874
MalI GATC 1 cut(s) 240
MboI GATC 1 cut(s) 238
MfeI CAATTG 1 cut(s) 35
MflI RGATCY 1 cut(s) 238
MhlI GDGCHC 2 cut(s) 182, 822
MlsI TGGCCA 1 cut(s) 17
MluCI AATT 9 cut(s) 35, 157, 628, 633, 681, 693, 705, 773, 852
MluNI TGGCCA 1 cut(s) 17
MlyI GAGTC 1 cut(s) 120
MmeI TCCRAC 1 cut(s) 525
MnlI CCTC 8 cut(s) 54, 177, 229, 366, 432, 553, 831, 925
Mox20I TGGCCA 1 cut(s) 17
MroXI GAANNNNTTC 1 cut(s) 486
MscI TGGCCA 1 cut(s) 17
MseI TTAA 2 cut(s) 632, 851
Msp20I TGGCCA 1 cut(s) 17
MspA1I CMGCKG 1 cut(s) 137
MspI CCGG 2 cut(s) 285, 369
MspR9I CCNGG 3 cut(s) 247, 272, 309
MunI CAATTG 1 cut(s) 35
MvaI CCWGG 3 cut(s) 247, 272, 309
MvnI CGCG 1 cut(s) 48
MwoI GCNNNNNNNGC 3 cut(s) 143, 785, 920
NdeII GATC 1 cut(s) 238
NheI GCTAGC 1 cut(s) 119
NlaIII CATG 2 cut(s) 559, 622
NlaIV GGNNCC 3 cut(s) 313, 325, 499
NmuCI GTSAC 1 cut(s) 292
NsbI TGCGCA 1 cut(s) 572
PceI AGGCCT 1 cut(s) 263
PciSI GCTCTTC 1 cut(s) 357
PdmI GAANNNNTTC 1 cut(s) 486
PfeI GAWTC 5 cut(s) 250, 665, 935, 965, 974
PfoI TCCNGGA 1 cut(s) 307
PkrI GCNGC 4 cut(s) 145, 148, 202, 205
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
Psp124BI GAGCTC 1 cut(s) 822
Psp6I CCWGG 3 cut(s) 245, 270, 307
PspFI CCCAGC 1 cut(s) 923
PspGI CCWGG 3 cut(s) 245, 270, 307
PspN4I GGNNCC 3 cut(s) 313, 325, 499
PspPI GGNCC 3 cut(s) 268, 311, 722
PstNI CAGNNNCTG 1 cut(s) 917
PsuI RGATCY 1 cut(s) 238
RsaI GTAC 1 cut(s) 578
RsaNI GTAC 1 cut(s) 577
SacI GAGCTC 1 cut(s) 822
SapI GCTCTTC 1 cut(s) 357
SaqAI TTAA 2 cut(s) 632, 851
SatI GCNGC 4 cut(s) 144, 147, 201, 204
Sau3AI GATC 1 cut(s) 238
Sau96I GGNCC 3 cut(s) 268, 311, 722
SchI GAGTC 1 cut(s) 120
ScrFI CCNGG 3 cut(s) 247, 272, 309
SduI GDGCHC 2 cut(s) 182, 822
SexAI ACCWGGT 1 cut(s) 270
SfaNI GCATC 2 cut(s) 508, 877
SfcI CTRYAG 1 cut(s) 99
SinI GGWCC 2 cut(s) 268, 311
Sse9I AATT 9 cut(s) 35, 157, 628, 633, 681, 693, 705, 773, 852
SseBI AGGCCT 1 cut(s) 263
SsiI CCGC 5 cut(s) 9, 135, 143, 146, 170
SspI AATATT 1 cut(s) 867
SspMI CTAG 3 cut(s) 120, 978, 982
SstI GAGCTC 1 cut(s) 822
StuI AGGCCT 1 cut(s) 263
StyD4I CCNGG 3 cut(s) 245, 270, 307
StyI CCWWGG 2 cut(s) 264, 338
TaaI ACNGT 2 cut(s) 85, 403
TaqI TCGA 2 cut(s) 424, 836
TasI AATT 9 cut(s) 35, 157, 628, 633, 681, 693, 705, 773, 852
TatI WGTACW 1 cut(s) 576
TauI GCSGC 2 cut(s) 146, 149
TfiI GAWTC 5 cut(s) 250, 665, 935, 965, 974
Tru1I TTAA 2 cut(s) 632, 851
Tru9I TTAA 2 cut(s) 632, 851
TscAI CASTG 1 cut(s) 945
TseFI GTSAC 1 cut(s) 292
TseI GCWGC 2 cut(s) 200, 203
Tsp45I GTSAC 1 cut(s) 292
TspDTI ATGAA 3 cut(s) 612, 705, 897
TspGWI ACGGA 2 cut(s) 572, 916
TspRI CASTG 1 cut(s) 945
VpaK11BI GGWCC 2 cut(s) 268, 311
XapI RAATTY 2 cut(s) 681, 693
XmnI GAANNNNTTC 1 cut(s) 486
XspI CTAG 3 cut(s) 120, 978, 982
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.