Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0002800

Physical Location & Seq

Genomic Coordinates Reverse (-)

56642 .. 59490

Gene Structure 2849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g00070.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGCTTTTGCTTCTGCGACTTGCTTTTCTTCCCAACTGCAACTGCAACGGCTTCCTCGCGGCCTCGCCGCCAACAGTCCCTTATTCGTATTTCCTTCTCCTTCTTCTTCTAATTGTCGTCGTTTCAGACCTCTGTGTCCGACACTCAGAGCAAGCAGACCCTTTTCCGCCGTTGTATCGGCGGCGGCGGTGAAGAGTAATTCGCATTCGAATTCCAGTGGAAACAAAACCAGTAAAGCAGCACCAGCGGAAGAAGAGGAAGCAGAAGAAGCAGTGGAAGAGGTGGAAGAGGATCTACCGTGGATTCAGGAGAAGGCCTTGGACGTGGTAGAGTTCACGGGCTCCGTCACACAGGCGATTCCTGGACCCAGAGTGGGCACCAGCTCTCTCCCTTGGATTCTGGCTCTCCCTCTCGCCTATGCCGGTCTCACTTTCATCATTGCCCTTGTCAAGACCGTCAAAAAGTTTTCTTCCCCTCGACATAAACGCAAGAAGCTGGTGAATAAAAATGCTATGCTATGTAAATCAATAGACGAATTGTTTCAGAATGGTGCAGAAGTCAAACCCGATGTCTTGAACCAACTTGTGCAGAAGACTGGTTTTGGCATGGAGGAAATTTTGCGAAAGTACATTCGGTATACTTTGAATGAAAAACCATTCAACCCAGATGTGGTTTCCAACTTAATTCAGCTCAGAAAAGCTTCCAAGTTCGATGACTCTCAAGTTGCTGAAATTCTGAATGAAATTTCAAGAAGAATTGTACGAGACAAAGGCCCAGTTGTAATGGATGTTTCAGGCTACACTGAAAGAGGTTTCAAGAGAAAATTAGCTGTTCAAGCCCTGTTTGGAAAGGTTTTCTATCTGTCAGAGCTTCCAGAGTTCTGTTCGAGGGATAGCTCCTTAATTGTCGAAGAAATATTTGGTGTTACAGATGAAGATGCAGATAAATTACGGATACATACACTTTCTGAAGCAGGGGACATAGATTCGTTAGAAAAGATGGTTGATGGTTCAGATTCAGATGATTCTGGCCGGGGCTCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

349

Amino Acids

38.33

Weight (kDa)

6.4

Isoelectric Point (pI)

53.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08540
fragaria_vesca	FvH4_4g37340
malus_domestica	MD13G1000800.v1.1 MD16G1004900.v1.1
prunus_persica	Prupe.1G351900_v2.0.a1
pyrus_communis	pycom13g00070
rosa_chinensis	RchiOBHm_Chr1g0316621 RchiOBHm_Chr3g0483721 RchiOBHm_Chr3g0483731 RchiOBHm_Chr4g0403031 RchiOBHm_Chr4g0447201 RchiOBHm_Chr6g0263291
rosa_laevigata	RLG00000005597
rosa_multiflora	Rmu_co8235609.1_g000001 Rmu_sc0000101.1_g000002 Rmu_sc0000310.1_g000018 Rmu_sc0001241.1_g000043 Rmu_ssc0000359.1_g000022
rosa_roxburghii	Rroxscaffold_5G00387570
rosa_rugosa	Rorug04G0379000
rosa_samantha	Rh1AG022300 Rh2BG461100 Rh2CG299400 Rh3AG256400 Rh4AG023400 Rh4AG023500 Rh4AG440200 Rh4BG449200 Rh4CG466200 Rh4DG447700 Rh5CG543000 Rh6AG123500 Rh6BG118500 Rh6CG116600 Rh6DG105200
rosa_wichuraiana	Rw1G002360 Rw4G001660 Rw4G037660 Rw6G025410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	135
AccB1I	GGYRCC	1 cut(s)	377
AccI	GTMKAC	1 cut(s)	638
AccII	CGCG	1 cut(s)	60
AciI	CCGC	7 cut(s)	60, 69, 168, 182, 185, 188, 248
AclWI	GGATC	1 cut(s)	300
AcoI	YGGCCR	1 cut(s)	1030
AcsI	RAATTY	4 cut(s)	211, 615, 732, 744
AcuI	CTGAAG	1 cut(s)	990
AfaI	GTAC	2 cut(s)	629, 762
AfiI	CCNNNNNNNGG	2 cut(s)	374, 670
AgsI	TTSAA	6 cut(s)	577, 646, 661, 750, 817, 836
AjiI	CACGTC	1 cut(s)	325
AjnI	CCWGG	1 cut(s)	361
AjuI	GAANNNNNNNTTGG	2 cut(s)	903, 935
AluBI	AGCT	7 cut(s)	384, 496, 691, 701, 830, 871, 897
AluI	AGCT	7 cut(s)	384, 496, 691, 701, 830, 871, 897
Alw26I	GTCTC	2 cut(s)	431, 759
AlwI	GGATC	1 cut(s)	300
AoxI	GGCC	4 cut(s)	61, 315, 772, 1030
ApeKI	GCWGC	1 cut(s)	239
ApoI	RAATTY	4 cut(s)	211, 615, 732, 744
ArsI	GACNNNNNNTTYG	2 cut(s)	555, 587
Asp700I	GAANNNNTTC	2 cut(s)	540, 700
AspS9I	GGNCC	2 cut(s)	365, 773
AsuC2I	CCSGG	1 cut(s)	1034
AsuHPI	GGTGA	2 cut(s)	202, 511
AsuII	TTCGAA	1 cut(s)	209
AvaII	GGWCC	1 cut(s)	365
BaeGI	GKGCMC	1 cut(s)	380
BanI	GGYRCC	1 cut(s)	377
BanII	GRGCYC	2 cut(s)	344, 1040
BarI	GAAGNNNNNNTAC	2 cut(s)	279, 311
BbsI	GAAGAC	1 cut(s)	599
BbvI	GCAGC	1 cut(s)	251
BccI	CCATC	2 cut(s)	994, 1001
BceAI	ACGGC	2 cut(s)	65, 155
BciT130I	CCWGG	1 cut(s)	363
BciVI	GTATCC	1 cut(s)	948
BcnI	CCSGG	1 cut(s)	1034
BcoDI	GTCTC	2 cut(s)	431, 759
BfuI	GTATCC	1 cut(s)	948
BisI	GCNGC	5 cut(s)	61, 69, 183, 186, 240
BlsI	GCNGC	5 cut(s)	62, 70, 184, 187, 241
Bme1390I	CCNGG	2 cut(s)	363, 1034
Bme18I	GGWCC	1 cut(s)	365
BmgBI	CACGTC	1 cut(s)	325
BmgT120I	GGNCC	2 cut(s)	365, 773
BmiI	GGNNCC	3 cut(s)	343, 367, 379
BmrFI	CCNGG	2 cut(s)	363, 1034
BmrI	ACTGGG	1 cut(s)	770
BmsI	GCATC	1 cut(s)	928
BmuI	ACTGGG	1 cut(s)	770
BpiI	GAAGAC	1 cut(s)	599
Bpu14I	TTCGAA	1 cut(s)	209
BpuEI	CTTGAG	1 cut(s)	705
BpuMI	CCSGG	1 cut(s)	1034
BsaI	GGTCTC	1 cut(s)	431
BsaJI	CCNNGG	4 cut(s)	299, 318, 392, 1033
Bsc4I	CCNNNNNNNGG	2 cut(s)	374, 670
Bse118I	RCCGGY	1 cut(s)	422
Bse1I	ACTGG	4 cut(s)	216, 231, 601, 776
Bse3DI	GCAATG	1 cut(s)	438
BseBI	CCWGG	1 cut(s)	363
BseDI	CCNNGG	4 cut(s)	299, 318, 392, 1033
BseGI	GGATG	1 cut(s)	793
BseLI	CCNNNNNNNGG	2 cut(s)	374, 670
BseMI	GCAATG	1 cut(s)	438
BseMII	CTCAG	2 cut(s)	160, 706
BseNI	ACTGG	4 cut(s)	216, 231, 601, 776
BseSI	GKGCMC	1 cut(s)	380
BseXI	GCAGC	1 cut(s)	251
BsgI	GTGCAG	2 cut(s)	573, 608
Bsh1236I	CGCG	1 cut(s)	60
BshFI	GGCC	4 cut(s)	63, 317, 774, 1032
BshNI	GGYRCC	1 cut(s)	377
BsiSI	CCGG	2 cut(s)	423, 1033
BslFI	GGGAC	2 cut(s)	63, 992
BslI	CCNNNNNNNGG	2 cut(s)	374, 670
BsmAI	GTCTC	2 cut(s)	431, 759
BsmFI	GGGAC	2 cut(s)	63, 992
BsmI	GAATGC	1 cut(s)	205
BsnI	GGCC	4 cut(s)	63, 317, 774, 1032
Bso31I	GGTCTC	1 cut(s)	431
Bsp119I	TTCGAA	1 cut(s)	209
Bsp1286I	GDGCHC	3 cut(s)	344, 380, 1040
Bsp143I	GATC	1 cut(s)	292
BspACI	CCGC	7 cut(s)	60, 69, 168, 182, 185, 188, 248
BspANI	GGCC	4 cut(s)	63, 317, 774, 1032
BspCNI	CTCAG	2 cut(s)	159, 705
BspFNI	CGCG	1 cut(s)	60
BspLI	GGNNCC	3 cut(s)	343, 367, 379
BspPI	GGATC	1 cut(s)	300
BspT104I	TTCGAA	1 cut(s)	209
BspT107I	GGYRCC	1 cut(s)	377
BspTNI	GGTCTC	1 cut(s)	431
BsrDI	GCAATG	1 cut(s)	438
BsrFI	RCCGGY	1 cut(s)	422
BsrI	ACTGG	4 cut(s)	216, 231, 601, 776
BssAI	RCCGGY	1 cut(s)	422
BssECI	CCNNGG	4 cut(s)	299, 318, 392, 1033
BssMI	GATC	1 cut(s)	292
BssNAI	GTATAC	1 cut(s)	639
BssT1I	CCWWGG	2 cut(s)	318, 392
Bst1107I	GTATAC	1 cut(s)	639
Bst2UI	CCWGG	1 cut(s)	363
Bst4CI	ACNGT	3 cut(s)	77, 300, 457
Bst6I	CTCTTC	4 cut(s)	188, 249, 273, 282
BstBI	TTCGAA	1 cut(s)	209
BstC8I	GCNNGC	1 cut(s)	154
BstDEI	CTNAG	2 cut(s)	146, 692
BstDSI	CCRYGG	1 cut(s)	299
BstF5I	GGATG	1 cut(s)	793
BstFNI	CGCG	1 cut(s)	60
BstKTI	GATC	1 cut(s)	295
BstMAI	GTCTC	2 cut(s)	431, 759
BstMBI	GATC	1 cut(s)	292
BstMWI	GCNNNNNNNGC	3 cut(s)	245, 269, 836
BstNI	CCWGG	1 cut(s)	363
BstSCI	CCNGG	2 cut(s)	361, 1032
BstSLI	GKGCMC	1 cut(s)	380
BstUI	CGCG	1 cut(s)	60
BstV1I	GCAGC	1 cut(s)	251
BstV2I	GAAGAC	1 cut(s)	599
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
BstZ17I	GTATAC	1 cut(s)	639
BsuI	GTATCC	1 cut(s)	948
BsuRI	GGCC	4 cut(s)	63, 317, 774, 1032
BtgI	CCRYGG	1 cut(s)	299
BtrI	CACGTC	1 cut(s)	325
BtsCI	GGATG	1 cut(s)	793
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	3 cut(s)	223, 279, 801
Cac8I	GCNNGC	1 cut(s)	154
Cfr10I	RCCGGY	1 cut(s)	422
Cfr13I	GGNCC	2 cut(s)	365, 773
Csp6I	GTAC	2 cut(s)	628, 761
CviAII	CATG	1 cut(s)	607
CviQI	GTAC	2 cut(s)	628, 761
DdeI	CTNAG	2 cut(s)	146, 692
DpnI	GATC	1 cut(s)	294
DpnII	GATC	1 cut(s)	292
DrdI	GACNNNNNNGTC	1 cut(s)	135
DseDI	GACNNNNNNGTC	1 cut(s)	135
EaeI	YGGCCR	1 cut(s)	1030
Eam1104I	CTCTTC	4 cut(s)	188, 249, 273, 282
EarI	CTCTTC	4 cut(s)	188, 249, 273, 282
EciI	GGCGGA	1 cut(s)	157
Eco130I	CCWWGG	2 cut(s)	318, 392
Eco147I	AGGCCT	1 cut(s)	317
Eco24I	GRGCYC	2 cut(s)	344, 1040
Eco31I	GGTCTC	1 cut(s)	431
Eco47I	GGWCC	1 cut(s)	365
Eco57I	CTGAAG	1 cut(s)	990
EcoRI	GAATTC	1 cut(s)	211
EcoRII	CCWGG	1 cut(s)	361
EcoT14I	CCWWGG	2 cut(s)	318, 392
EcoT38I	GRGCYC	2 cut(s)	344, 1040
ErhI	CCWWGG	2 cut(s)	318, 392
FaeI	CATG	1 cut(s)	610
FaiI	YATR	8 cut(s)	420, 483, 515, 520, 608, 639, 960, 983
FaqI	GGGAC	2 cut(s)	63, 992
FatI	CATG	1 cut(s)	606
FblI	GTMKAC	1 cut(s)	638
Fnu4HI	GCNGC	5 cut(s)	61, 69, 183, 186, 240
FokI	GGATG	1 cut(s)	800
FriOI	GRGCYC	2 cut(s)	344, 1040
Fsp4HI	GCNGC	5 cut(s)	61, 69, 183, 186, 240
GluI	GCNGC	5 cut(s)	61, 69, 183, 186, 240
HaeIII	GGCC	4 cut(s)	63, 317, 774, 1032
HapII	CCGG	2 cut(s)	423, 1033
Hin1II	CATG	1 cut(s)	610
HindIII	AAGCTT	1 cut(s)	699
HinfI	GANTC	7 cut(s)	304, 358, 397, 716, 986, 1016, 1025
HpaII	CCGG	2 cut(s)	423, 1033
HphI	GGTGA	2 cut(s)	202, 511
Hpy166II	GTNNAC	2 cut(s)	336, 639
Hpy188III	TCNNGA	6 cut(s)	308, 451, 574, 750, 817, 875
Hpy8I	GTNNAC	2 cut(s)	336, 639
Hpy99I	CGWCG	1 cut(s)	123
HpyAV	CCTTC	3 cut(s)	105, 111, 307
HpyCH4III	ACNGT	3 cut(s)	77, 300, 457
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	5 cut(s)	40, 46, 554, 589, 941
HpyF10VI	GCNNNNNNNGC	3 cut(s)	245, 269, 836
HpyF3I	CTNAG	2 cut(s)	146, 692
HpySE526I	ACGT	1 cut(s)	324
Hsp92II	CATG	1 cut(s)	610
Kzo9I	GATC	1 cut(s)	292
LmnI	GCTCC	2 cut(s)	347, 902
Lsp1109I	GCAGC	1 cut(s)	251
LweI	GCATC	1 cut(s)	928
MaeII	ACGT	1 cut(s)	324
MaeIII	GTNAC	2 cut(s)	346, 925
MalI	GATC	1 cut(s)	294
MboI	GATC	1 cut(s)	292
MflI	RGATCY	1 cut(s)	292
MhlI	GDGCHC	3 cut(s)	344, 380, 1040
MlyI	GAGTC	1 cut(s)	710
MmeI	TCCRAC	2 cut(s)	164, 702
MroXI	GAANNNNTTC	2 cut(s)	540, 700
MseI	TTAA	2 cut(s)	683, 902
MspA1I	CMGCKG	1 cut(s)	248
MspI	CCGG	2 cut(s)	423, 1033
MspR9I	CCNGG	2 cut(s)	363, 1034
Mva1269I	GAATGC	1 cut(s)	205
MvaI	CCWGG	1 cut(s)	363
MvnI	CGCG	1 cut(s)	60
MwoI	GCNNNNNNNGC	3 cut(s)	245, 269, 836
NciI	CCSGG	1 cut(s)	1034
NdeII	GATC	1 cut(s)	292
NlaIII	CATG	1 cut(s)	610
NlaIV	GGNNCC	3 cut(s)	343, 367, 379
NmuCI	GTSAC	1 cut(s)	346
NspV	TTCGAA	1 cut(s)	209
PceI	AGGCCT	1 cut(s)	317
PctI	GAATGC	1 cut(s)	205
PdmI	GAANNNNTTC	2 cut(s)	540, 700
PfeI	GAWTC	6 cut(s)	304, 358, 397, 986, 1016, 1025
PfoI	TCCNGGA	1 cut(s)	361
PkrI	GCNGC	5 cut(s)	62, 70, 184, 187, 241
PleI	GAGTC	1 cut(s)	710
PpsI	GAGTC	1 cut(s)	710
Psp6I	CCWGG	1 cut(s)	361
PspGI	CCWGG	1 cut(s)	361
PspN4I	GGNNCC	3 cut(s)	343, 367, 379
PspPI	GGNCC	2 cut(s)	365, 773
PsuI	RGATCY	1 cut(s)	292
RsaI	GTAC	2 cut(s)	629, 762
RsaNI	GTAC	2 cut(s)	628, 761
SaqAI	TTAA	2 cut(s)	683, 902
SatI	GCNGC	5 cut(s)	61, 69, 183, 186, 240
Sau3AI	GATC	1 cut(s)	292
Sau96I	GGNCC	2 cut(s)	365, 773
SchI	GAGTC	1 cut(s)	710
ScrFI	CCNGG	2 cut(s)	363, 1034
SduI	GDGCHC	3 cut(s)	344, 380, 1040
SfaNI	GCATC	1 cut(s)	928
SfuI	TTCGAA	1 cut(s)	209
SinI	GGWCC	1 cut(s)	365
SmlI	CTYRAG	1 cut(s)	720
SmoI	CTYRAG	1 cut(s)	720
SseBI	AGGCCT	1 cut(s)	317
SsiI	CCGC	7 cut(s)	60, 69, 168, 182, 185, 188, 248
SspI	AATATT	1 cut(s)	918
StuI	AGGCCT	1 cut(s)	317
StyD4I	CCNGG	2 cut(s)	361, 1032
StyI	CCWWGG	2 cut(s)	318, 392
TaaI	ACNGT	3 cut(s)	77, 300, 457
TaiI	ACGT	1 cut(s)	327
TaqI	TCGA	5 cut(s)	209, 478, 711, 887, 909
TatI	WGTACW	1 cut(s)	627
TauI	GCSGC	4 cut(s)	63, 71, 185, 188
TfiI	GAWTC	6 cut(s)	304, 358, 397, 986, 1016, 1025
Tru1I	TTAA	2 cut(s)	683, 902
Tru9I	TTAA	2 cut(s)	683, 902
TscAI	CASTG	3 cut(s)	223, 279, 808
TseFI	GTSAC	1 cut(s)	346
TseI	GCWGC	1 cut(s)	239
Tsp45I	GTSAC	1 cut(s)	346
TspDTI	ATGAA	4 cut(s)	424, 663, 756, 948
TspGWI	ACGGA	2 cut(s)	334, 967
TspRI	CASTG	3 cut(s)	223, 279, 808
VpaK11BI	GGWCC	1 cut(s)	365
XapI	RAATTY	4 cut(s)	211, 615, 732, 744
XmiI	GTMKAC	1 cut(s)	638
XmnI	GAANNNNTTC	2 cut(s)	540, 700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.