Rw4G001660

RNA splicing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0002800
Physical Location & Seq
Reverse (-)
3131246 .. 3135129
3884 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G001660.1

Sequence Viewer

Length: 933 bp
ATGGCTTTTGCTTTGGTCACTTCCTTTGCTTCCCAATTGCTCCCTCGCGCCCCACCCAAAGGTCTCCCTTTGCTTCGTCCCACAGTCGCACCTGTGTCTGTAGCTGTGAGAGTCCGAGCAAGCAAACCGTTATTCGCTGTGGCGGCGGTGAAGAATAATTCCAATCCTCCGCCGATGACGAAGAGCCCTAACAAAAGCAGTAAAGCAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCCGTTGAAGAAGTGGAAGAGGATCTACCTTGGATTCAAGAGAAGGCCTTGGACCCGGTGGAGTTCACCGACTCTGTCACGCAGGCCATTCCTGGACCCAGAGTTGGCACCAGCTCATTCCTTTGGATTTTGGCTTTTCCTCTCGCTTATGCCGGTCTCAATTTTGTCATCGCCGTTGTCAATACCGTCAAAAAGTTCTCTTCCCCTCGACATAAACGCAAGAAACTAGTCAATAAAAATGCTATGCTATGCAAATCAATAGACGAAATGTTTCAGAATGGCTCCGACCAAATCACGCCTGATACAGGTTTTGGCATGGAGGAGATTTTGCGCAAGTACATCCGTTGTACTTTGAATGAAAAGCCATTCAACCCAGACATGGTTTCCAATTTAATTCAGCTCAGGAAAGCTTCTTTGTTCGATGATTCTCAGGTGGCTGAAATTCTAAATGAAATTTCAAGAAGAATTTTGCTGACTGCTTGTTTGCAACTTGCAGGCCCAGTTGTAATGGATATGGCAGGTTATACTGAACGGGGTTTCAAAAGAAAATTAGCCGTTCAAGCCCTATATGGAAAGGTGTTCTATTTGTCAGAGGTCATCAGAACAGAGTTCTGCACTAGACTATGTCATCCACGATCACAGACAGTAGCTCAACTTGTAGACATGGAGCTCCAATGTACTCGGCATTATATAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

310

Amino Acids

34.71

Weight (kDa)

8.14

Isoelectric Point (pI)

60.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARMH5 PF22915 180 - 276 1.7e-34 Armadillo-like helical domain-containing protein 5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 566
Acc36I ACCTGC 1 cut(s) 743
AccB1I GGYRCC 1 cut(s) 341
AccI GTMKAC 1 cut(s) 894
AccII CGCG 1 cut(s) 48
AciI CCGC 3 cut(s) 143, 146, 170
AclWI GGATC 1 cut(s) 264
AcsI RAATTY 3 cut(s) 675, 687, 699
AfaI GTAC 3 cut(s) 572, 583, 913
AfiI CCNNNNNNNGG 4 cut(s) 59, 338, 539, 613
AgsI TTSAA 7 cut(s) 242, 272, 589, 604, 693, 775, 794
AhlI ACTAGT 1 cut(s) 460
AjnI CCWGG 1 cut(s) 325
AluBI AGCT 6 cut(s) 104, 348, 634, 644, 884, 904
AluI AGCT 6 cut(s) 104, 348, 634, 644, 884, 904
Alw21I GWGCWC 1 cut(s) 906
Alw26I GTCTC 2 cut(s) 68, 395
AlwI GGATC 1 cut(s) 264
AoxI GGCC 3 cut(s) 279, 318, 730
ApoI RAATTY 3 cut(s) 675, 687, 699
ArsI GACNNNNNNTTYG 2 cut(s) 700, 732
Asp700I GAANNNNTTC 1 cut(s) 504
AspLEI GCGC 2 cut(s) 50, 567
AspS9I GGNCC 3 cut(s) 286, 329, 731
AsuC2I CCSGG 1 cut(s) 290
AsuHPI GGTGA 2 cut(s) 160, 292
AvaII GGWCC 2 cut(s) 286, 329
BanI GGYRCC 1 cut(s) 341
BanII GRGCYC 2 cut(s) 188, 906
BarI GAAGNNNNNNTAC 2 cut(s) 243, 275
Bbv12I GWGCWC 1 cut(s) 906
BceAI ACGGC 3 cut(s) 221, 392, 773
BciT130I CCWGG 1 cut(s) 327
BcnI CCSGG 1 cut(s) 290
BcoDI GTCTC 2 cut(s) 68, 395
BcuI ACTAGT 1 cut(s) 460
BfaI CTAG 2 cut(s) 461, 852
BfmI CTRYAG 1 cut(s) 99
BfuAI ACCTGC 1 cut(s) 743
BisI GCNGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 145
Bme1390I CCNGG 2 cut(s) 290, 327
Bme18I GGWCC 2 cut(s) 286, 329
BmgT120I GGNCC 3 cut(s) 286, 329, 731
BmiI GGNNCC 4 cut(s) 288, 331, 343, 517
BmrFI CCNGG 2 cut(s) 290, 327
BmrI ACTGGG 1 cut(s) 728
BmuI ACTGGG 1 cut(s) 728
Bpu10I CCTNAGC 1 cut(s) 635
BpuMI CCSGG 1 cut(s) 290
BsaI GGTCTC 2 cut(s) 68, 395
BsaJI CCNNGG 2 cut(s) 263, 282
Bsc4I CCNNNNNNNGG 4 cut(s) 59, 338, 539, 613
Bse118I RCCGGY 1 cut(s) 386
Bse1I ACTGG 1 cut(s) 734
BseBI CCWGG 1 cut(s) 327
BseDI CCNNGG 2 cut(s) 263, 282
BseGI GGATG 2 cut(s) 573, 862
BseLI CCNNNNNNNGG 4 cut(s) 59, 338, 539, 613
BseMII CTCAG 2 cut(s) 649, 677
BseNI ACTGG 1 cut(s) 734
BseRI GAGGAG 1 cut(s) 569
BsgI GTGCAG 1 cut(s) 832
Bsh1236I CGCG 1 cut(s) 48
BshFI GGCC 3 cut(s) 281, 320, 732
BshNI GGYRCC 1 cut(s) 341
BsiHKAI GWGCWC 1 cut(s) 906
BsiSI CCGG 2 cut(s) 290, 387
BslFI GGGAC 1 cut(s) 63
BslI CCNNNNNNNGG 4 cut(s) 59, 338, 539, 613
BsmAI GTCTC 2 cut(s) 68, 395
BsmFI GGGAC 1 cut(s) 63
BsnI GGCC 3 cut(s) 281, 320, 732
Bso31I GGTCTC 2 cut(s) 68, 395
Bsp1286I GDGCHC 2 cut(s) 188, 906
Bsp143I GATC 2 cut(s) 256, 869
BspACI CCGC 3 cut(s) 143, 146, 170
BspANI GGCC 3 cut(s) 281, 320, 732
BspCNI CTCAG 2 cut(s) 648, 676
BspFNI CGCG 1 cut(s) 48
BspLI GGNNCC 4 cut(s) 288, 331, 343, 517
BspMI ACCTGC 1 cut(s) 743
BspPI GGATC 1 cut(s) 264
BspQI GCTCTTC 1 cut(s) 176
BspT107I GGYRCC 1 cut(s) 341
BspTNI GGTCTC 2 cut(s) 68, 395
BsrFI RCCGGY 1 cut(s) 386
BsrI ACTGG 1 cut(s) 734
BssAI RCCGGY 1 cut(s) 386
BssECI CCNNGG 2 cut(s) 263, 282
BssMI GATC 2 cut(s) 256, 869
BssT1I CCWWGG 2 cut(s) 263, 282
Bst2UI CCWGG 1 cut(s) 327
Bst4CI ACNGT 4 cut(s) 85, 129, 421, 880
Bst6I CTCTTC 3 cut(s) 176, 246, 439
BstC8I GCNNGC 3 cut(s) 121, 318, 730
BstDEI CTNAG 2 cut(s) 635, 663
BstENI CCTNNNNNAGG 1 cut(s) 537
BstF5I GGATG 2 cut(s) 573, 862
BstFNI CGCG 1 cut(s) 48
BstHHI GCGC 2 cut(s) 50, 567
BstKTI GATC 2 cut(s) 259, 872
BstMAI GTCTC 2 cut(s) 68, 395
BstMBI GATC 2 cut(s) 256, 869
BstMWI GCNNNNNNNGC 2 cut(s) 143, 794
BstNI CCWGG 1 cut(s) 327
BstSCI CCNGG 2 cut(s) 288, 325
BstSFI CTRYAG 1 cut(s) 99
BstUI CGCG 1 cut(s) 48
BstX2I RGATCY 1 cut(s) 256
BstYI RGATCY 1 cut(s) 256
BsuRI GGCC 3 cut(s) 281, 320, 732
BtgZI GCGATG 1 cut(s) 388
BtsCI GGATG 2 cut(s) 573, 862
BveI ACCTGC 1 cut(s) 743
Cac8I GCNNGC 3 cut(s) 121, 318, 730
CfoI GCGC 2 cut(s) 50, 567
Cfr10I RCCGGY 1 cut(s) 386
Cfr13I GGNCC 3 cut(s) 286, 329, 731
Csp6I GTAC 3 cut(s) 571, 582, 912
CviAII CATG 3 cut(s) 550, 613, 898
CviQI GTAC 3 cut(s) 571, 582, 912
DdeI CTNAG 2 cut(s) 635, 663
DpnI GATC 2 cut(s) 258, 871
DpnII GATC 2 cut(s) 256, 869
Eam1104I CTCTTC 3 cut(s) 176, 246, 439
EarI CTCTTC 3 cut(s) 176, 246, 439
EciI GGCGGA 1 cut(s) 159
Ecl136II GAGCTC 1 cut(s) 904
Eco130I CCWWGG 2 cut(s) 263, 282
Eco147I AGGCCT 1 cut(s) 281
Eco24I GRGCYC 2 cut(s) 188, 906
Eco31I GGTCTC 2 cut(s) 68, 395
Eco47I GGWCC 2 cut(s) 286, 329
Eco53kI GAGCTC 1 cut(s) 904
EcoICRI GAGCTC 1 cut(s) 904
EcoNI CCTNNNNNAGG 1 cut(s) 537
EcoRII CCWGG 1 cut(s) 325
EcoT14I CCWWGG 2 cut(s) 263, 282
EcoT38I GRGCYC 2 cut(s) 188, 906
ErhI CCWWGG 2 cut(s) 263, 282
FaeI CATG 3 cut(s) 553, 616, 901
FaqI GGGAC 1 cut(s) 63
FatI CATG 3 cut(s) 549, 612, 897
FblI GTMKAC 1 cut(s) 894
Fnu4HI GCNGC 1 cut(s) 144
FokI GGATG 2 cut(s) 560, 849
FriOI GRGCYC 2 cut(s) 188, 906
Fsp4HI GCNGC 1 cut(s) 144
FspBI CTAG 2 cut(s) 461, 852
FspI TGCGCA 1 cut(s) 566
GlaI GCGC 2 cut(s) 49, 566
GluI GCNGC 1 cut(s) 144
HaeIII GGCC 3 cut(s) 281, 320, 732
HapII CCGG 2 cut(s) 290, 387
HhaI GCGC 2 cut(s) 50, 567
Hin1II CATG 3 cut(s) 553, 616, 901
Hin6I GCGC 2 cut(s) 48, 565
HinP1I GCGC 2 cut(s) 48, 565
HindIII AAGCTT 1 cut(s) 642
HinfI GANTC 4 cut(s) 111, 268, 305, 659
HpaII CCGG 2 cut(s) 290, 387
HphI GGTGA 2 cut(s) 160, 292
Hpy166II GTNNAC 2 cut(s) 300, 895
Hpy188I TCNGA 5 cut(s) 116, 510, 520, 826, 836
Hpy188III TCNNGA 3 cut(s) 272, 637, 693
Hpy8I GTNNAC 2 cut(s) 300, 895
HpyAV CCTTC 1 cut(s) 271
HpyCH4III ACNGT 4 cut(s) 85, 129, 421, 880
HpyCH4V TGCA 4 cut(s) 486, 721, 728, 849
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 794
HpyF3I CTNAG 2 cut(s) 635, 663
Hsp92II CATG 3 cut(s) 553, 616, 901
HspAI GCGC 2 cut(s) 48, 565
Kzo9I GATC 2 cut(s) 256, 869
LguI GCTCTTC 1 cut(s) 176
LmnI GCTCC 4 cut(s) 45, 521, 901, 909
MaeI CTAG 2 cut(s) 461, 852
MaeIII GTNAC 2 cut(s) 16, 310
MalI GATC 2 cut(s) 258, 871
MboI GATC 2 cut(s) 256, 869
MfeI CAATTG 1 cut(s) 35
MflI RGATCY 1 cut(s) 256
MhlI GDGCHC 2 cut(s) 188, 906
MluCI AATT 9 cut(s) 35, 157, 394, 622, 627, 675, 687, 699, 782
MlyI GAGTC 2 cut(s) 120, 299
MmeI TCCRAC 1 cut(s) 543
MnlI CCTC 7 cut(s) 54, 177, 247, 384, 450, 547, 820
MroXI GAANNNNTTC 1 cut(s) 504
MseI TTAA 1 cut(s) 626
MspI CCGG 2 cut(s) 290, 387
MspR9I CCNGG 2 cut(s) 290, 327
MunI CAATTG 1 cut(s) 35
MvaI CCWGG 1 cut(s) 327
MvnI CGCG 1 cut(s) 48
MwoI GCNNNNNNNGC 2 cut(s) 143, 794
NciI CCSGG 1 cut(s) 290
NdeII GATC 2 cut(s) 256, 869
NlaIII CATG 3 cut(s) 553, 616, 901
NlaIV GGNNCC 4 cut(s) 288, 331, 343, 517
NmeAIII GCCGAG 1 cut(s) 895
NmuCI GTSAC 2 cut(s) 16, 310
NsbI TGCGCA 1 cut(s) 566
PceI AGGCCT 1 cut(s) 281
PciSI GCTCTTC 1 cut(s) 176
PdmI GAANNNNTTC 1 cut(s) 504
PfeI GAWTC 2 cut(s) 268, 659
PflFI GACNNNGTC 2 cut(s) 308, 858
PfoI TCCNGGA 1 cut(s) 325
PkrI GCNGC 1 cut(s) 145
PleI GAGTC 2 cut(s) 119, 299
PpsI GAGTC 2 cut(s) 119, 299
Psp124BI GAGCTC 1 cut(s) 906
Psp6I CCWGG 1 cut(s) 325
PspGI CCWGG 1 cut(s) 325
PspN4I GGNNCC 4 cut(s) 288, 331, 343, 517
PspPI GGNCC 3 cut(s) 286, 329, 731
PsuI RGATCY 1 cut(s) 256
PsyI GACNNNGTC 2 cut(s) 308, 858
RsaI GTAC 3 cut(s) 572, 583, 913
RsaNI GTAC 3 cut(s) 571, 582, 912
SacI GAGCTC 1 cut(s) 906
SapI GCTCTTC 1 cut(s) 176
SaqAI TTAA 1 cut(s) 626
SatI GCNGC 1 cut(s) 144
Sau3AI GATC 2 cut(s) 256, 869
Sau96I GGNCC 3 cut(s) 286, 329, 731
SchI GAGTC 2 cut(s) 120, 299
ScrFI CCNGG 2 cut(s) 290, 327
SduI GDGCHC 2 cut(s) 188, 906
SfcI CTRYAG 1 cut(s) 99
SinI GGWCC 2 cut(s) 286, 329
SpeI ACTAGT 1 cut(s) 460
Sse9I AATT 9 cut(s) 35, 157, 394, 622, 627, 675, 687, 699, 782
SseBI AGGCCT 1 cut(s) 281
SsiI CCGC 3 cut(s) 143, 146, 170
SspMI CTAG 2 cut(s) 461, 852
SstI GAGCTC 1 cut(s) 906
StuI AGGCCT 1 cut(s) 281
StyD4I CCNGG 2 cut(s) 288, 325
StyI CCWWGG 2 cut(s) 263, 282
TaaI ACNGT 4 cut(s) 85, 129, 421, 880
TaqI TCGA 2 cut(s) 442, 654
TasI AATT 9 cut(s) 35, 157, 394, 622, 627, 675, 687, 699, 782
TatI WGTACW 3 cut(s) 570, 581, 911
TauI GCSGC 1 cut(s) 146
TfiI GAWTC 2 cut(s) 268, 659
Tru1I TTAA 1 cut(s) 626
Tru9I TTAA 1 cut(s) 626
TseFI GTSAC 2 cut(s) 16, 310
Tsp45I GTSAC 2 cut(s) 16, 310
TspDTI ATGAA 2 cut(s) 606, 699
TspGWI ACGGA 1 cut(s) 566
Tth111I GACNNNGTC 2 cut(s) 308, 858
VpaK11BI GGWCC 2 cut(s) 286, 329
XagI CCTNNNNNAGG 1 cut(s) 537
XapI RAATTY 3 cut(s) 675, 687, 699
XmiI GTMKAC 1 cut(s) 894
XmnI GAANNNNTTC 1 cut(s) 504
XspI CTAG 2 cut(s) 461, 852
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.