RchiOBHm_Chr1g0316621

RNA splicing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002800
Physical Location & Seq
Reverse (-)
4124049 .. 4125250
1202 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54702

Sequence Viewer

Length: 606 bp
ATGGCGGCGGCGAAGAGTAATTCCAATGCTCCGCCGCCGACGACAAGCCCTAACAAAAGCAGTAAAGCAGCTGAAGAAGAAGAAGCCGTTAAAGAGCTGGAAGAGGATCTACCCTGGATTCAAGAGAAGGCCTTAGACCTGGTGGAGTTCACCGACTCTGTCACTCAAGCCATTCCTGGACCCAGAGTTGGCACCAGCTCTCTCCCTTGGATTTTGGCTCTTCCTCTCGATTATGCCAGTCTCACTTTTGTCATCGCCGTTGTCAAGACCGTCAAAAAGTTCTCTTCCCCTCGACATAAACGCAAGAAACTGGTCAATAAAAATGCTATGCTATGCAAATCAATAGACGAAATGTTTCAGAATGGCTCCGAACAAATCAAGCTTGATGCCCTGAAACAACTCGTGCAAAAGACAGGTTTTGGCATGGAGGAGATTTTGCGCAAGTACATCCATTATACTTTGAATGAAAATCCATTCAACCCAGAAATGGTTTCCAATTTAATTCAGCTCAGGAAAGCTTCTTTGTTCGATGATTCTCAGGTGGCTGAAATTCTAAATGAAATTTCAAGAAGAATTGTGCAAGACAAAGCAAGGCATTGCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

22.57

Weight (kDa)

7.73

Isoelectric Point (pI)

59.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARMH5 PF22915 138 - 196 4.8e-22 Armadillo-like helical domain-containing protein 5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 440
AccB1I GGYRCC 1 cut(s) 191
AciI CCGC 4 cut(s) 5, 8, 32, 35
AclWI GGATC 1 cut(s) 114
AcsI RAATTY 2 cut(s) 549, 561
AcuI CTGAAG 1 cut(s) 93
AfaI GTAC 1 cut(s) 446
AfiI CCNNNNNNNGG 2 cut(s) 188, 487
AgsI TTSAA 4 cut(s) 122, 463, 478, 567
AjnI CCWGG 3 cut(s) 113, 138, 175
AluBI AGCT 6 cut(s) 71, 97, 198, 382, 508, 518
AluI AGCT 6 cut(s) 71, 97, 198, 382, 508, 518
Alw26I GTCTC 1 cut(s) 245
AlwI GGATC 1 cut(s) 114
AoxI GGCC 1 cut(s) 129
ApeKI GCWGC 1 cut(s) 68
ApoI RAATTY 2 cut(s) 549, 561
Asp700I GAANNNNTTC 1 cut(s) 354
AspLEI GCGC 1 cut(s) 441
AspS9I GGNCC 1 cut(s) 179
AsuHPI GGTGA 1 cut(s) 142
AvaII GGWCC 1 cut(s) 179
BanI GGYRCC 1 cut(s) 191
BarI GAAGNNNNNNTAC 2 cut(s) 93, 125
BauI CACGAG 1 cut(s) 401
BbvI GCAGC 1 cut(s) 80
BceAI ACGGC 2 cut(s) 71, 242
BciT130I CCWGG 3 cut(s) 115, 140, 177
BcoDI GTCTC 1 cut(s) 245
BisI GCNGC 4 cut(s) 6, 9, 35, 69
BlsI GCNGC 4 cut(s) 7, 10, 36, 70
Bme1390I CCNGG 3 cut(s) 115, 140, 177
Bme18I GGWCC 1 cut(s) 179
BmgT120I GGNCC 1 cut(s) 179
BmiI GGNNCC 3 cut(s) 181, 193, 367
BmrFI CCNGG 3 cut(s) 115, 140, 177
BmsI GCATC 1 cut(s) 376
Bpu10I CCTNAGC 1 cut(s) 509
BpuEI CTTGAG 1 cut(s) 150
BsaJI CCNNGG 2 cut(s) 113, 206
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 487
Bse1I ACTGG 2 cut(s) 237, 315
Bse3DI GCAATG 1 cut(s) 595
BseBI CCWGG 3 cut(s) 115, 140, 177
BseDI CCNNGG 2 cut(s) 113, 206
BseGI GGATG 1 cut(s) 447
BseLI CCNNNNNNNGG 2 cut(s) 188, 487
BseMI GCAATG 1 cut(s) 595
BseMII CTCAG 2 cut(s) 523, 551
BseNI ACTGG 2 cut(s) 237, 315
BseRI GAGGAG 1 cut(s) 443
BseXI GCAGC 1 cut(s) 80
BshFI GGCC 1 cut(s) 131
BshNI GGYRCC 1 cut(s) 191
BslI CCNNNNNNNGG 2 cut(s) 188, 487
BsmAI GTCTC 1 cut(s) 245
BsnI GGCC 1 cut(s) 131
Bsp143I GATC 1 cut(s) 106
BspACI CCGC 4 cut(s) 5, 8, 32, 35
BspANI GGCC 1 cut(s) 131
BspCNI CTCAG 2 cut(s) 522, 550
BspLI GGNNCC 3 cut(s) 181, 193, 367
BspPI GGATC 1 cut(s) 114
BspQI GCTCTTC 1 cut(s) 225
BspT107I GGYRCC 1 cut(s) 191
BsrDI GCAATG 1 cut(s) 595
BsrI ACTGG 2 cut(s) 237, 315
BssECI CCNNGG 2 cut(s) 113, 206
BssMI GATC 1 cut(s) 106
BssSI CACGAG 1 cut(s) 401
BssT1I CCWWGG 1 cut(s) 206
Bst2BI CACGAG 1 cut(s) 401
Bst2UI CCWGG 3 cut(s) 115, 140, 177
Bst4CI ACNGT 1 cut(s) 271
Bst6I CTCTTC 4 cut(s) 8, 96, 225, 289
BstDEI CTNAG 3 cut(s) 133, 509, 537
BstF5I GGATG 1 cut(s) 447
BstHHI GCGC 1 cut(s) 441
BstKTI GATC 1 cut(s) 109
BstMAI GTCTC 1 cut(s) 245
BstMBI GATC 1 cut(s) 106
BstNI CCWGG 3 cut(s) 115, 140, 177
BstSCI CCNGG 3 cut(s) 113, 138, 175
BstV1I GCAGC 1 cut(s) 80
BstX2I RGATCY 1 cut(s) 106
BstYI RGATCY 1 cut(s) 106
BsuRI GGCC 1 cut(s) 131
BtgZI GCGATG 1 cut(s) 238
BtsCI GGATG 1 cut(s) 447
CfoI GCGC 1 cut(s) 441
Cfr13I GGNCC 1 cut(s) 179
CsiI ACCWGGT 1 cut(s) 138
Csp6I GTAC 1 cut(s) 445
CviAII CATG 1 cut(s) 424
CviQI GTAC 1 cut(s) 445
DdeI CTNAG 3 cut(s) 133, 509, 537
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
Eam1104I CTCTTC 4 cut(s) 8, 96, 225, 289
EarI CTCTTC 4 cut(s) 8, 96, 225, 289
EciI GGCGGA 1 cut(s) 21
Eco130I CCWWGG 1 cut(s) 206
Eco147I AGGCCT 1 cut(s) 131
Eco47I GGWCC 1 cut(s) 179
Eco57I CTGAAG 1 cut(s) 93
EcoRII CCWGG 3 cut(s) 113, 138, 175
EcoT14I CCWWGG 1 cut(s) 206
ErhI CCWWGG 1 cut(s) 206
FaeI CATG 1 cut(s) 427
FaiI YATR 6 cut(s) 234, 297, 329, 334, 425, 456
FatI CATG 1 cut(s) 423
Fnu4HI GCNGC 4 cut(s) 6, 9, 35, 69
FokI GGATG 1 cut(s) 434
Fsp4HI GCNGC 4 cut(s) 6, 9, 35, 69
FspI TGCGCA 1 cut(s) 440
GlaI GCGC 1 cut(s) 440
GluI GCNGC 4 cut(s) 6, 9, 35, 69
HaeIII GGCC 1 cut(s) 131
HhaI GCGC 1 cut(s) 441
Hin1II CATG 1 cut(s) 427
Hin6I GCGC 1 cut(s) 439
HinP1I GCGC 1 cut(s) 439
HindIII AAGCTT 2 cut(s) 380, 516
HinfI GANTC 3 cut(s) 118, 155, 533
HphI GGTGA 1 cut(s) 142
Hpy166II GTNNAC 1 cut(s) 150
Hpy188I TCNGA 2 cut(s) 360, 370
Hpy188III TCNNGA 5 cut(s) 122, 227, 265, 511, 567
Hpy8I GTNNAC 1 cut(s) 150
Hpy99I CGWCG 1 cut(s) 43
HpyAV CCTTC 1 cut(s) 121
HpyCH4III ACNGT 1 cut(s) 271
HpyCH4V TGCA 4 cut(s) 336, 406, 580, 600
HpyF3I CTNAG 3 cut(s) 133, 509, 537
Hsp92II CATG 1 cut(s) 427
HspAI GCGC 1 cut(s) 439
Kzo9I GATC 1 cut(s) 106
LguI GCTCTTC 1 cut(s) 225
LmnI GCTCC 2 cut(s) 34, 371
Lsp1109I GCAGC 1 cut(s) 80
LweI GCATC 1 cut(s) 376
MabI ACCWGGT 1 cut(s) 138
MaeIII GTNAC 1 cut(s) 160
MalI GATC 1 cut(s) 108
MboI GATC 1 cut(s) 106
MboII GAAGA 8 cut(s) 25, 86, 89, 92, 113, 212, 276, 582
MflI RGATCY 1 cut(s) 106
MluCI AATT 6 cut(s) 19, 496, 501, 549, 561, 573
MlyI GAGTC 1 cut(s) 149
MnlI CCTC 4 cut(s) 97, 234, 300, 421
MroXI GAANNNNTTC 1 cut(s) 354
MseI TTAA 3 cut(s) 90, 500, 604
MspA1I CMGCKG 1 cut(s) 71
MspR9I CCNGG 3 cut(s) 115, 140, 177
MvaI CCWGG 3 cut(s) 115, 140, 177
NdeII GATC 1 cut(s) 106
NlaIII CATG 1 cut(s) 427
NlaIV GGNNCC 3 cut(s) 181, 193, 367
NmuCI GTSAC 1 cut(s) 160
NsbI TGCGCA 1 cut(s) 440
PceI AGGCCT 1 cut(s) 131
PciSI GCTCTTC 1 cut(s) 225
PdmI GAANNNNTTC 1 cut(s) 354
PfeI GAWTC 2 cut(s) 118, 533
PflFI GACNNNGTC 1 cut(s) 158
PfoI TCCNGGA 1 cut(s) 175
PkrI GCNGC 4 cut(s) 7, 10, 36, 70
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
Psp6I CCWGG 3 cut(s) 113, 138, 175
PspGI CCWGG 3 cut(s) 113, 138, 175
PspN4I GGNNCC 3 cut(s) 181, 193, 367
PspPI GGNCC 1 cut(s) 179
PsuI RGATCY 1 cut(s) 106
PsyI GACNNNGTC 1 cut(s) 158
PvuII CAGCTG 1 cut(s) 71
RsaI GTAC 1 cut(s) 446
RsaNI GTAC 1 cut(s) 445
SapI GCTCTTC 1 cut(s) 225
SaqAI TTAA 3 cut(s) 90, 500, 604
SatI GCNGC 4 cut(s) 6, 9, 35, 69
Sau3AI GATC 1 cut(s) 106
Sau96I GGNCC 1 cut(s) 179
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 3 cut(s) 115, 140, 177
SetI ASST 9 cut(s) 73, 99, 141, 200, 384, 418, 510, 520, 543
SexAI ACCWGGT 1 cut(s) 138
SfaNI GCATC 1 cut(s) 376
SinI GGWCC 1 cut(s) 179
SmlI CTYRAG 1 cut(s) 165
SmoI CTYRAG 1 cut(s) 165
Sse9I AATT 6 cut(s) 19, 496, 501, 549, 561, 573
SseBI AGGCCT 1 cut(s) 131
SsiI CCGC 4 cut(s) 5, 8, 32, 35
StuI AGGCCT 1 cut(s) 131
StyD4I CCNGG 3 cut(s) 113, 138, 175
StyI CCWWGG 1 cut(s) 206
TaaI ACNGT 1 cut(s) 271
TaqI TCGA 3 cut(s) 228, 292, 528
TasI AATT 6 cut(s) 19, 496, 501, 549, 561, 573
TatI WGTACW 1 cut(s) 444
TauI GCSGC 3 cut(s) 8, 11, 37
TfiI GAWTC 2 cut(s) 118, 533
Tru1I TTAA 3 cut(s) 90, 500, 604
Tru9I TTAA 3 cut(s) 90, 500, 604
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 1 cut(s) 68
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 2 cut(s) 480, 573
Tth111I GACNNNGTC 1 cut(s) 158
VpaK11BI GGWCC 1 cut(s) 179
XapI RAATTY 2 cut(s) 549, 561
XmnI GAANNNNTTC 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.