RchiOBHm_Chr3g0483721

RNA splicing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0002800
Physical Location & Seq
Forward (+)
30022393 .. 30023283
891 bp
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UTR
Exon/CDS
Intron
PRQ44846

Sequence Viewer

Length: 486 bp
ATGGCTTCCGCTTTGGCCACTTCCTTTGCTTCCCAATTACTCCCTCGCGCCCCACCCAAAGGTCTCCCTTTGCTTTGTCCCACAGTCACACCTGTGTCTGTAGCTGTGAGAGTCCGAGATAGCAGGCCGTTATCCGCTGTGGCGGCGGCGAAGAGTAATTCCAATCCTCCGCCGACGACGAGGAGCCCTAACAAAAGGAGTAAAGCAGCAGAAGAAGAAGAAGAAGTCGTTGAAGAAGTGGAAGAGGATCTACCCTGGATTCAAGAGAAGGCCTTGGACCTGGTGGATTTCACCGGCTCTGTCATGCAGGCCATTCCTGGACCCAGAGTTGGCACCAGCTCCCTCCCTTGGATTTTGGCTCTTCCTCTCACTTATGCCGGTCTCAATTTTTTCATCGGCGTTGTCAAGACCATCAAAAAGTTCTCTTCCCCTCGACATAAACGCAAGAACTGGTCAATAAAAATGCTATGCTATGCAAATCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

17.52

Weight (kDa)

9.55

Isoelectric Point (pI)

60.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 332
AccII CGCG 1 cut(s) 48
AciI CCGC 5 cut(s) 9, 135, 143, 146, 170
AclWI GGATC 1 cut(s) 255
AcoI YGGCCR 1 cut(s) 15
AfiI CCNNNNNNNGG 3 cut(s) 59, 329, 348
AgsI TTSAA 2 cut(s) 233, 263
AjnI CCWGG 3 cut(s) 254, 279, 316
AleI CACNNNNGTG 1 cut(s) 92
AluBI AGCT 2 cut(s) 104, 339
AluI AGCT 2 cut(s) 104, 339
Alw26I GTCTC 2 cut(s) 68, 386
AlwI GGATC 1 cut(s) 255
AoxI GGCC 4 cut(s) 15, 125, 270, 309
ApeKI GCWGC 1 cut(s) 206
AspLEI GCGC 1 cut(s) 50
AspS9I GGNCC 2 cut(s) 277, 320
AsuHPI GGTGA 1 cut(s) 283
AvaII GGWCC 2 cut(s) 277, 320
BalI TGGCCA 1 cut(s) 17
BanI GGYRCC 1 cut(s) 332
BanII GRGCYC 1 cut(s) 188
BarI GAAGNNNNNNTAC 2 cut(s) 234, 266
BbvI GCAGC 1 cut(s) 218
BccI CCATC 1 cut(s) 419
BceAI ACGGC 1 cut(s) 112
BciT130I CCWGG 3 cut(s) 256, 281, 318
BcoDI GTCTC 2 cut(s) 68, 386
BfmI CTRYAG 1 cut(s) 99
BisI GCNGC 3 cut(s) 144, 147, 207
BlsI GCNGC 3 cut(s) 145, 148, 208
Bme1390I CCNGG 3 cut(s) 256, 281, 318
Bme18I GGWCC 2 cut(s) 277, 320
BmgT120I GGNCC 2 cut(s) 277, 320
BmiI GGNNCC 3 cut(s) 185, 322, 334
BmrFI CCNGG 3 cut(s) 256, 281, 318
BsaI GGTCTC 2 cut(s) 68, 386
BsaJI CCNNGG 3 cut(s) 254, 273, 347
Bsc4I CCNNNNNNNGG 3 cut(s) 59, 329, 348
Bse118I RCCGGY 2 cut(s) 293, 377
Bse1I ACTGG 1 cut(s) 455
BseBI CCWGG 3 cut(s) 256, 281, 318
BseDI CCNNGG 3 cut(s) 254, 273, 347
BseLI CCNNNNNNNGG 3 cut(s) 59, 329, 348
BseNI ACTGG 1 cut(s) 455
BseRI GAGGAG 1 cut(s) 196
BseXI GCAGC 1 cut(s) 218
Bsh1236I CGCG 1 cut(s) 48
BshFI GGCC 4 cut(s) 17, 127, 272, 311
BshNI GGYRCC 1 cut(s) 332
BsiSI CCGG 2 cut(s) 294, 378
BslFI GGGAC 1 cut(s) 63
BslI CCNNNNNNNGG 3 cut(s) 59, 329, 348
BsmAI GTCTC 2 cut(s) 68, 386
BsmFI GGGAC 1 cut(s) 63
BsnI GGCC 4 cut(s) 17, 127, 272, 311
Bso31I GGTCTC 2 cut(s) 68, 386
Bsp1286I GDGCHC 1 cut(s) 188
Bsp143I GATC 1 cut(s) 247
BspACI CCGC 5 cut(s) 9, 135, 143, 146, 170
BspANI GGCC 4 cut(s) 17, 127, 272, 311
BspFNI CGCG 1 cut(s) 48
BspLI GGNNCC 3 cut(s) 185, 322, 334
BspPI GGATC 1 cut(s) 255
BspQI GCTCTTC 1 cut(s) 366
BspT107I GGYRCC 1 cut(s) 332
BspTNI GGTCTC 2 cut(s) 68, 386
BsrFI RCCGGY 2 cut(s) 293, 377
BsrI ACTGG 1 cut(s) 455
BssAI RCCGGY 2 cut(s) 293, 377
BssECI CCNNGG 3 cut(s) 254, 273, 347
BssMI GATC 1 cut(s) 247
BssT1I CCWWGG 2 cut(s) 273, 347
Bst2UI CCWGG 3 cut(s) 256, 281, 318
Bst4CI ACNGT 1 cut(s) 85
Bst6I CTCTTC 4 cut(s) 146, 237, 366, 430
BstC8I GCNNGC 2 cut(s) 125, 309
BstFNI CGCG 1 cut(s) 48
BstHHI GCGC 1 cut(s) 50
BstKTI GATC 1 cut(s) 250
BstMAI GTCTC 2 cut(s) 68, 386
BstMBI GATC 1 cut(s) 247
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstNI CCWGG 3 cut(s) 256, 281, 318
BstSCI CCNGG 3 cut(s) 254, 279, 316
BstSFI CTRYAG 1 cut(s) 99
BstUI CGCG 1 cut(s) 48
BstV1I GCAGC 1 cut(s) 218
BstX2I RGATCY 1 cut(s) 247
BstYI RGATCY 1 cut(s) 247
BsuRI GGCC 4 cut(s) 17, 127, 272, 311
Cac8I GCNNGC 2 cut(s) 125, 309
CfoI GCGC 1 cut(s) 50
Cfr10I RCCGGY 2 cut(s) 293, 377
Cfr13I GGNCC 2 cut(s) 277, 320
CsiI ACCWGGT 1 cut(s) 279
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CviAII CATG 1 cut(s) 304
DpnI GATC 1 cut(s) 249
DpnII GATC 1 cut(s) 247
EaeI YGGCCR 1 cut(s) 15
Eam1104I CTCTTC 4 cut(s) 146, 237, 366, 430
EarI CTCTTC 4 cut(s) 146, 237, 366, 430
EciI GGCGGA 1 cut(s) 159
Eco130I CCWWGG 2 cut(s) 273, 347
Eco147I AGGCCT 1 cut(s) 272
Eco24I GRGCYC 1 cut(s) 188
Eco31I GGTCTC 2 cut(s) 68, 386
Eco47I GGWCC 2 cut(s) 277, 320
EcoRII CCWGG 3 cut(s) 254, 279, 316
EcoT14I CCWWGG 2 cut(s) 273, 347
EcoT38I GRGCYC 1 cut(s) 188
ErhI CCWWGG 2 cut(s) 273, 347
FaeI CATG 1 cut(s) 307
FaiI YATR 5 cut(s) 305, 375, 438, 469, 474
FaqI GGGAC 1 cut(s) 63
FatI CATG 1 cut(s) 303
Fnu4HI GCNGC 3 cut(s) 144, 147, 207
FriOI GRGCYC 1 cut(s) 188
Fsp4HI GCNGC 3 cut(s) 144, 147, 207
GlaI GCGC 1 cut(s) 49
GluI GCNGC 3 cut(s) 144, 147, 207
HaeIII GGCC 4 cut(s) 17, 127, 272, 311
HapII CCGG 2 cut(s) 294, 378
HhaI GCGC 1 cut(s) 50
Hin1II CATG 1 cut(s) 307
Hin6I GCGC 1 cut(s) 48
HinP1I GCGC 1 cut(s) 48
HinfI GANTC 2 cut(s) 111, 259
HpaII CCGG 2 cut(s) 294, 378
HphI GGTGA 1 cut(s) 283
Hpy188I TCNGA 1 cut(s) 116
Hpy188III TCNNGA 2 cut(s) 263, 406
Hpy99I CGWCG 2 cut(s) 178, 181
HpyAV CCTTC 1 cut(s) 262
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4V TGCA 2 cut(s) 307, 476
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
Hsp92II CATG 1 cut(s) 307
HspAI GCGC 1 cut(s) 48
Kzo9I GATC 1 cut(s) 247
LguI GCTCTTC 1 cut(s) 366
LmnI GCTCC 2 cut(s) 183, 344
Lsp1109I GCAGC 1 cut(s) 218
MabI ACCWGGT 1 cut(s) 279
MaeIII GTNAC 1 cut(s) 85
MalI GATC 1 cut(s) 249
MboI GATC 1 cut(s) 247
MboII GAAGA 9 cut(s) 163, 224, 227, 230, 233, 245, 254, 353, 417
MflI RGATCY 1 cut(s) 247
MhlI GDGCHC 1 cut(s) 188
MlsI TGGCCA 1 cut(s) 17
MluCI AATT 3 cut(s) 35, 157, 385
MluNI TGGCCA 1 cut(s) 17
MlyI GAGTC 1 cut(s) 120
MnlI CCTC 7 cut(s) 54, 174, 177, 238, 353, 375, 441
Mox20I TGGCCA 1 cut(s) 17
MscI TGGCCA 1 cut(s) 17
MslI CAYNNNNRTG 1 cut(s) 92
Msp20I TGGCCA 1 cut(s) 17
MspA1I CMGCKG 1 cut(s) 137
MspI CCGG 2 cut(s) 294, 378
MspR9I CCNGG 3 cut(s) 256, 281, 318
MvaI CCWGG 3 cut(s) 256, 281, 318
MvnI CGCG 1 cut(s) 48
MwoI GCNNNNNNNGC 1 cut(s) 143
NdeII GATC 1 cut(s) 247
NlaIII CATG 1 cut(s) 307
NlaIV GGNNCC 3 cut(s) 185, 322, 334
NmuCI GTSAC 1 cut(s) 85
OliI CACNNNNGTG 1 cut(s) 92
PceI AGGCCT 1 cut(s) 272
PciSI GCTCTTC 1 cut(s) 366
PfeI GAWTC 1 cut(s) 259
PfoI TCCNGGA 1 cut(s) 316
PkrI GCNGC 3 cut(s) 145, 148, 208
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
Psp6I CCWGG 3 cut(s) 254, 279, 316
PspGI CCWGG 3 cut(s) 254, 279, 316
PspN4I GGNNCC 3 cut(s) 185, 322, 334
PspPI GGNCC 2 cut(s) 277, 320
PsuI RGATCY 1 cut(s) 247
RseI CAYNNNNRTG 1 cut(s) 92
SapI GCTCTTC 1 cut(s) 366
SatI GCNGC 3 cut(s) 144, 147, 207
Sau3AI GATC 1 cut(s) 247
Sau96I GGNCC 2 cut(s) 277, 320
SchI GAGTC 1 cut(s) 120
ScrFI CCNGG 3 cut(s) 256, 281, 318
SduI GDGCHC 1 cut(s) 188
SetI ASST 5 cut(s) 64, 94, 106, 282, 341
SexAI ACCWGGT 1 cut(s) 279
SfcI CTRYAG 1 cut(s) 99
SinI GGWCC 2 cut(s) 277, 320
SmiMI CAYNNNNRTG 1 cut(s) 92
Sse9I AATT 3 cut(s) 35, 157, 385
SseBI AGGCCT 1 cut(s) 272
SsiI CCGC 5 cut(s) 9, 135, 143, 146, 170
StuI AGGCCT 1 cut(s) 272
StyD4I CCNGG 3 cut(s) 254, 279, 316
StyI CCWWGG 2 cut(s) 273, 347
TaaI ACNGT 1 cut(s) 85
TaqI TCGA 1 cut(s) 433
TasI AATT 3 cut(s) 35, 157, 385
TauI GCSGC 2 cut(s) 146, 149
TfiI GAWTC 1 cut(s) 259
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 1 cut(s) 206
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 1 cut(s) 382
VpaK11BI GGWCC 2 cut(s) 277, 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.