Rh2BG461100

RNA splicing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0002800
Physical Location & Seq
Forward (+)
65242478 .. 65259797
17320 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG461100.1

Sequence Viewer

Length: 864 bp
ATGCAAGACCTCTGTTTTACGCCGACACCAAATCCATCGGATCCAAAACCTAGATCTCTCTCCTCTCTCCCTCTTATCTTCTACACAGCTACACCTATACCCCAAATCCATCTCTCCGACAACCAAACTAGTAGTAAACTAAACTTGTTGCTCATGGCTTCTGCTTTGGCCACTTCCTTTGCTTCCGAATTGCTCCCTCGCGCCCCACCCAAAGGTCTCCCTTTGCTTTGTCCCACAGTCGCACATGTGTCTGTAGCTGTGAGAGTCCGAGATAGCAGGCCGTTATCCGCTGTGGTGGCGGTGAAGAGTAATTCCAATCCTCCGCCGACGACGAGGAGCCCTAACAAAAGGAGTAAAGCAGCAGAAGAAGAAGAAGCCGTTAAAGAAGTGGAAGAGGATCTACCCTGGATTCAAGAGAAGGCCTTGGACCTGGTGGATTTCACCGGCTCTGTCACGCAGGCCATTCCTGGACCCAGAGTTGGCACCAGCTCCCTCCCTTGGATTTTGGCTCTTCCTCTCGCTTATGCCGGTCTCAATTTTGTTATCGCCGTTGTCAAGACCGTCAAAAATTTCTCTTCCCCTCGACATAAACGCAAGAAACTGAATGGCTTTGACCAAATCATGCCTGATACCCTGAAACAACTCGTGCAAAATACAGGTTTTGGCATGGAGGAGATTTTGCGCAAGTACATCTGTTATACTTTGAATGAAAAGCCATTCAATCCAGACATGGTTTCCAATTTAATTCAGCTCAGGAAAGCTTCTTTGTTCGATGATTCTCAGGTGGCTGAAATTCTAAATGAAATTTCAAGAAGAATTTGTGCGAGACAAAGTCTGATGTCTTCAGCCAGATTCAATCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

287

Amino Acids

31.63

Weight (kDa)

9.28

Isoelectric Point (pI)

53.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARMH5 PF22915 219 - 277 3.8e-21 Armadillo-like helical domain-containing protein 5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 683
AccB1I GGYRCC 1 cut(s) 482
AccII CGCG 1 cut(s) 201
AciI CCGC 3 cut(s) 288, 299, 323
AclWI GGATC 3 cut(s) 35, 48, 405
AcoI YGGCCR 1 cut(s) 168
AcsI RAATTY 4 cut(s) 568, 792, 804, 816
AcuI CTGAAG 1 cut(s) 828
AfaI GTAC 1 cut(s) 689
AfiI CCNNNNNNNGG 3 cut(s) 212, 479, 498
AflIII ACRYGT 1 cut(s) 244
AgsI TTSAA 5 cut(s) 413, 706, 721, 810, 856
AhlI ACTAGT 1 cut(s) 128
AjnI CCWGG 3 cut(s) 404, 429, 466
AluBI AGCT 5 cut(s) 89, 257, 489, 751, 761
AluI AGCT 5 cut(s) 89, 257, 489, 751, 761
Alw26I GTCTC 3 cut(s) 221, 536, 820
AlwI GGATC 3 cut(s) 35, 48, 405
AoxI GGCC 4 cut(s) 168, 278, 420, 459
ApeKI GCWGC 1 cut(s) 359
ApoI RAATTY 4 cut(s) 568, 792, 804, 816
AspLEI GCGC 2 cut(s) 203, 684
AspS9I GGNCC 2 cut(s) 427, 470
AsuHPI GGTGA 2 cut(s) 313, 433
AvaII GGWCC 2 cut(s) 427, 470
BalI TGGCCA 1 cut(s) 170
BamHI GGATCC 1 cut(s) 40
BanI GGYRCC 1 cut(s) 482
BanII GRGCYC 1 cut(s) 341
BarI GAAGNNNNNNTAC 2 cut(s) 384, 416
BauI CACGAG 1 cut(s) 644
BbsI GAAGAC 1 cut(s) 834
BbvI GCAGC 1 cut(s) 371
BccI CCATC 2 cut(s) 43, 117
BceAI ACGGC 3 cut(s) 265, 362, 533
BciT130I CCWGG 3 cut(s) 406, 431, 468
BcoDI GTCTC 3 cut(s) 221, 536, 820
BcuI ACTAGT 1 cut(s) 128
BfaI CTAG 2 cut(s) 51, 129
BfmI CTRYAG 1 cut(s) 252
BglII AGATCT 1 cut(s) 53
BisI GCNGC 1 cut(s) 360
BlsI GCNGC 1 cut(s) 361
Bme1390I CCNGG 3 cut(s) 406, 431, 468
Bme18I GGWCC 2 cut(s) 427, 470
BmgT120I GGNCC 2 cut(s) 427, 470
BmiI GGNNCC 4 cut(s) 42, 338, 472, 484
BmrFI CCNGG 3 cut(s) 406, 431, 468
BpiI GAAGAC 1 cut(s) 834
Bpu10I CCTNAGC 1 cut(s) 752
BsaI GGTCTC 2 cut(s) 221, 536
BsaJI CCNNGG 3 cut(s) 404, 423, 497
Bsc4I CCNNNNNNNGG 3 cut(s) 212, 479, 498
Bse118I RCCGGY 2 cut(s) 443, 527
BseBI CCWGG 3 cut(s) 406, 431, 468
BseDI CCNNGG 3 cut(s) 404, 423, 497
BseLI CCNNNNNNNGG 3 cut(s) 212, 479, 498
BseMII CTCAG 2 cut(s) 766, 794
BseRI GAGGAG 3 cut(s) 52, 349, 686
BseXI GCAGC 1 cut(s) 371
Bsh1236I CGCG 1 cut(s) 201
BshFI GGCC 4 cut(s) 170, 280, 422, 461
BshNI GGYRCC 1 cut(s) 482
BsiSI CCGG 2 cut(s) 444, 528
BslFI GGGAC 1 cut(s) 216
BslI CCNNNNNNNGG 3 cut(s) 212, 479, 498
BsmAI GTCTC 3 cut(s) 221, 536, 820
BsmFI GGGAC 1 cut(s) 216
BsnI GGCC 4 cut(s) 170, 280, 422, 461
Bso31I GGTCTC 2 cut(s) 221, 536
Bsp1286I GDGCHC 1 cut(s) 341
Bsp143I GATC 3 cut(s) 40, 53, 397
BspACI CCGC 3 cut(s) 288, 299, 323
BspANI GGCC 4 cut(s) 170, 280, 422, 461
BspCNI CTCAG 2 cut(s) 765, 793
BspFNI CGCG 1 cut(s) 201
BspLI GGNNCC 4 cut(s) 42, 338, 472, 484
BspPI GGATC 3 cut(s) 35, 48, 405
BspQI GCTCTTC 1 cut(s) 516
BspT107I GGYRCC 1 cut(s) 482
BspTNI GGTCTC 2 cut(s) 221, 536
BsrFI RCCGGY 2 cut(s) 443, 527
BssAI RCCGGY 2 cut(s) 443, 527
BssECI CCNNGG 3 cut(s) 404, 423, 497
BssMI GATC 3 cut(s) 40, 53, 397
BssSI CACGAG 1 cut(s) 644
BssT1I CCWWGG 2 cut(s) 423, 497
Bst2BI CACGAG 1 cut(s) 644
Bst2UI CCWGG 3 cut(s) 406, 431, 468
Bst4CI ACNGT 2 cut(s) 238, 562
Bst6I CTCTTC 4 cut(s) 299, 387, 516, 580
BstC8I GCNNGC 2 cut(s) 278, 459
BstDEI CTNAG 2 cut(s) 752, 780
BstFNI CGCG 1 cut(s) 201
BstHHI GCGC 2 cut(s) 203, 684
BstKTI GATC 3 cut(s) 43, 56, 400
BstMAI GTCTC 3 cut(s) 221, 536, 820
BstMBI GATC 3 cut(s) 40, 53, 397
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstNI CCWGG 3 cut(s) 406, 431, 468
BstNSI RCATGY 1 cut(s) 248
BstSCI CCNGG 3 cut(s) 404, 429, 466
BstSFI CTRYAG 1 cut(s) 252
BstUI CGCG 1 cut(s) 201
BstV1I GCAGC 1 cut(s) 371
BstV2I GAAGAC 1 cut(s) 834
BstX2I RGATCY 3 cut(s) 40, 53, 397
BstYI RGATCY 3 cut(s) 40, 53, 397
BsuRI GGCC 4 cut(s) 170, 280, 422, 461
Cac8I GCNNGC 2 cut(s) 278, 459
CfoI GCGC 2 cut(s) 203, 684
Cfr10I RCCGGY 2 cut(s) 443, 527
Cfr13I GGNCC 2 cut(s) 427, 470
CsiI ACCWGGT 1 cut(s) 429
Csp6I GTAC 1 cut(s) 688
CspCI CAANNNNNGTGG 2 cut(s) 160, 195
CviAII CATG 5 cut(s) 154, 245, 622, 667, 730
CviQI GTAC 1 cut(s) 688
DdeI CTNAG 2 cut(s) 752, 780
DpnI GATC 3 cut(s) 42, 55, 399
DpnII GATC 3 cut(s) 40, 53, 397
EaeI YGGCCR 1 cut(s) 168
Eam1104I CTCTTC 4 cut(s) 299, 387, 516, 580
EarI CTCTTC 4 cut(s) 299, 387, 516, 580
EciI GGCGGA 1 cut(s) 312
Eco130I CCWWGG 2 cut(s) 423, 497
Eco147I AGGCCT 1 cut(s) 422
Eco24I GRGCYC 1 cut(s) 341
Eco31I GGTCTC 2 cut(s) 221, 536
Eco47I GGWCC 2 cut(s) 427, 470
Eco57I CTGAAG 1 cut(s) 828
EcoRII CCWGG 3 cut(s) 404, 429, 466
EcoT14I CCWWGG 2 cut(s) 423, 497
EcoT38I GRGCYC 1 cut(s) 341
ErhI CCWWGG 2 cut(s) 423, 497
FaeI CATG 5 cut(s) 157, 248, 625, 670, 733
FaiI YATR 9 cut(s) 98, 155, 246, 525, 588, 623, 668, 699, 731
FaqI GGGAC 1 cut(s) 216
FatI CATG 5 cut(s) 153, 244, 621, 666, 729
Fnu4HI GCNGC 1 cut(s) 360
FriOI GRGCYC 1 cut(s) 341
Fsp4HI GCNGC 1 cut(s) 360
FspBI CTAG 2 cut(s) 51, 129
FspI TGCGCA 1 cut(s) 683
GlaI GCGC 2 cut(s) 202, 683
GluI GCNGC 1 cut(s) 360
HaeIII GGCC 4 cut(s) 170, 280, 422, 461
HapII CCGG 2 cut(s) 444, 528
HhaI GCGC 2 cut(s) 203, 684
Hin1II CATG 5 cut(s) 157, 248, 625, 670, 733
Hin6I GCGC 2 cut(s) 201, 682
HinP1I GCGC 2 cut(s) 201, 682
HindIII AAGCTT 1 cut(s) 759
HinfI GANTC 4 cut(s) 264, 409, 776, 852
HpaII CCGG 2 cut(s) 444, 528
HphI GGTGA 2 cut(s) 313, 433
Hpy166II GTNNAC 1 cut(s) 137
Hpy188I TCNGA 5 cut(s) 40, 118, 187, 269, 837
Hpy188III TCNNGA 5 cut(s) 413, 556, 725, 754, 810
Hpy8I GTNNAC 1 cut(s) 137
Hpy99I CGWCG 2 cut(s) 331, 334
HpyAV CCTTC 1 cut(s) 412
HpyCH4III ACNGT 2 cut(s) 238, 562
HpyCH4V TGCA 2 cut(s) 4, 649
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
HpyF3I CTNAG 2 cut(s) 752, 780
Hsp92II CATG 5 cut(s) 157, 248, 625, 670, 733
HspAI GCGC 2 cut(s) 201, 682
Kzo9I GATC 3 cut(s) 40, 53, 397
LguI GCTCTTC 1 cut(s) 516
LmnI GCTCC 3 cut(s) 198, 336, 494
Lsp1109I GCAGC 1 cut(s) 371
MabI ACCWGGT 1 cut(s) 429
MaeI CTAG 2 cut(s) 51, 129
MaeIII GTNAC 1 cut(s) 451
MalI GATC 3 cut(s) 42, 55, 399
MboI GATC 3 cut(s) 40, 53, 397
MflI RGATCY 3 cut(s) 40, 53, 397
MhlI GDGCHC 1 cut(s) 341
MlsI TGGCCA 1 cut(s) 170
MluCI AATT 9 cut(s) 188, 310, 535, 568, 739, 744, 792, 804, 816
MluNI TGGCCA 1 cut(s) 170
MlyI GAGTC 1 cut(s) 273
MmeI TCCRAC 1 cut(s) 141
Mox20I TGGCCA 1 cut(s) 170
MscI TGGCCA 1 cut(s) 170
MseI TTAA 3 cut(s) 381, 743, 862
Msp20I TGGCCA 1 cut(s) 170
MspA1I CMGCKG 1 cut(s) 290
MspI CCGG 2 cut(s) 444, 528
MspR9I CCNGG 3 cut(s) 406, 431, 468
MvaI CCWGG 3 cut(s) 406, 431, 468
MvnI CGCG 1 cut(s) 201
MwoI GCNNNNNNNGC 1 cut(s) 296
NdeII GATC 3 cut(s) 40, 53, 397
NlaIII CATG 5 cut(s) 157, 248, 625, 670, 733
NlaIV GGNNCC 4 cut(s) 42, 338, 472, 484
NmuCI GTSAC 1 cut(s) 451
NsbI TGCGCA 1 cut(s) 683
NspI RCATGY 1 cut(s) 248
PceI AGGCCT 1 cut(s) 422
PciI ACATGT 1 cut(s) 244
PciSI GCTCTTC 1 cut(s) 516
PfeI GAWTC 3 cut(s) 409, 776, 852
PflFI GACNNNGTC 1 cut(s) 831
PfoI TCCNGGA 1 cut(s) 466
PkrI GCNGC 1 cut(s) 361
PleI GAGTC 1 cut(s) 272
PpsI GAGTC 1 cut(s) 272
PscI ACATGT 1 cut(s) 244
Psp6I CCWGG 3 cut(s) 404, 429, 466
PspGI CCWGG 3 cut(s) 404, 429, 466
PspN4I GGNNCC 4 cut(s) 42, 338, 472, 484
PspPI GGNCC 2 cut(s) 427, 470
PsuI RGATCY 3 cut(s) 40, 53, 397
PsyI GACNNNGTC 1 cut(s) 831
RsaI GTAC 1 cut(s) 689
RsaNI GTAC 1 cut(s) 688
SapI GCTCTTC 1 cut(s) 516
SaqAI TTAA 3 cut(s) 381, 743, 862
SatI GCNGC 1 cut(s) 360
Sau3AI GATC 3 cut(s) 40, 53, 397
Sau96I GGNCC 2 cut(s) 427, 470
SchI GAGTC 1 cut(s) 273
ScrFI CCNGG 3 cut(s) 406, 431, 468
SduI GDGCHC 1 cut(s) 341
SexAI ACCWGGT 1 cut(s) 429
SfcI CTRYAG 1 cut(s) 252
SinI GGWCC 2 cut(s) 427, 470
SpeI ACTAGT 1 cut(s) 128
Sse9I AATT 9 cut(s) 188, 310, 535, 568, 739, 744, 792, 804, 816
SseBI AGGCCT 1 cut(s) 422
SsiI CCGC 3 cut(s) 288, 299, 323
SspMI CTAG 2 cut(s) 51, 129
StuI AGGCCT 1 cut(s) 422
StyD4I CCNGG 3 cut(s) 404, 429, 466
StyI CCWWGG 2 cut(s) 423, 497
TaaI ACNGT 2 cut(s) 238, 562
TaqI TCGA 2 cut(s) 583, 771
TasI AATT 9 cut(s) 188, 310, 535, 568, 739, 744, 792, 804, 816
TatI WGTACW 1 cut(s) 687
TfiI GAWTC 3 cut(s) 409, 776, 852
Tru1I TTAA 3 cut(s) 381, 743, 862
Tru9I TTAA 3 cut(s) 381, 743, 862
TseFI GTSAC 1 cut(s) 451
TseI GCWGC 1 cut(s) 359
Tsp45I GTSAC 1 cut(s) 451
TspDTI ATGAA 2 cut(s) 723, 816
Tth111I GACNNNGTC 1 cut(s) 831
VpaK11BI GGWCC 2 cut(s) 427, 470
XapI RAATTY 4 cut(s) 568, 792, 804, 816
XceI RCATGY 1 cut(s) 248
XspI CTAG 2 cut(s) 51, 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.