Rw4G037660

RNA splicing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0002800
Physical Location & Seq
Forward (+)
64169951 .. 64173200
3250 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G037660.1

Sequence Viewer

Length: 990 bp
ATGGCTTCCGCTTTGGCCACTTCCTTTGCTTCCCAATTGCTCCCTCGCGCCCCACCCAAAGGTCTCCCTTTGCTTCGTCCCACAGTAGCACCTGTGTCCGGAGCTGTGAGAGTCCGAGCTAGCAGGTCGTTATCCGCTGTAGCGGCGGCGAAGAGTAATTCCAATCCTCCGCCGACGACGACGAGCCCTAACAAAAGCAGTAAAGCAGCAGCAGAAGAAGAAGCCGTTGAAGAAGTGGAAGAGGATCTACCCTGGATTCAAGAGAAGGCCTTGGACCTGGTGGAGTTCACCGGCTCTGTCACGCAGGCCATTCCTGGACCCAGAGTTGGCACCAGCTCTCTCCCTTGGATTTTGGCTCTTCCTCTCGCTTATGCCGGTCTCACTTTTGTCATCGCCGTTGTCAAGACCGTCAAAAAGTTCTCTTCCCCTCGACATAAACGCAAGAAACTGGTCAATAAAAATGCTATGCTATGCAAATCAATAGACGAAATGTTTCAGAATGGCTCCGACCAAATCACGCCTGATGCCCTGAAACAACTCGTGCAAAAGACAGGTTTTGGCATGGAGGAGATTTTGCGCAAGTACATCCGTTATACTTTGAATGAAAAGCCATTCAACCCAGACATGGTTTCCAATTTAATTCAGCTCAGGAAAGCTTCTTTATTCGATGATTCTCAAGTGGCTGAAATTCTAAATGAAATTTCAAGAAGAATTGTGCGAGACAAAGGCCCAGTTGTAATGGATATGGCAGGTTATACTGAACGGGGTTTCAAAAGAAAATTAGCCGTTCAAGCCCTATTTGGAAAGGTGTTCTATCTGTCAGAGCTCCCAGAGTTCTGTTCGAGGGATAGCTCCTTAATTGTCAAAGAAATATTTGGTGTTACAGATGAAGATGCAGACAGATTACGGATACATACAGCCTCTGAAGCTGGGGATATAGAATCACTGAAAAAAAAGTTTGATGTTTCAGATTCAGAAGATTCTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

329

Amino Acids

36.1

Weight (kDa)

8.87

Isoelectric Point (pI)

50.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARMH5 PF22915 184 - 275 1.5e-40 Armadillo-like helical domain-containing protein 5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 578
Acc36I ACCTGC 2 cut(s) 114, 740
AccB1I GGYRCC 1 cut(s) 329
AccII CGCG 1 cut(s) 48
AccIII TCCGGA 1 cut(s) 98
AciI CCGC 5 cut(s) 9, 135, 143, 146, 170
AclWI GGATC 1 cut(s) 252
AcoI YGGCCR 1 cut(s) 15
AcsI RAATTY 2 cut(s) 687, 699
AcuI CTGAAG 1 cut(s) 945
AfaI GTAC 1 cut(s) 584
AfiI CCNNNNNNNGG 4 cut(s) 59, 98, 326, 625
AgsI TTSAA 7 cut(s) 230, 260, 601, 616, 705, 772, 791
AjnI CCWGG 3 cut(s) 251, 276, 313
AluBI AGCT 9 cut(s) 104, 119, 336, 646, 656, 826, 852, 929, 987
AluI AGCT 9 cut(s) 104, 119, 336, 646, 656, 826, 852, 929, 987
Alw21I GWGCWC 1 cut(s) 828
Alw26I GTCTC 3 cut(s) 68, 383, 714
AlwI GGATC 1 cut(s) 252
AlwNI CAGNNNCTG 1 cut(s) 923
Aor13HI TCCGGA 1 cut(s) 98
AoxI GGCC 4 cut(s) 15, 267, 306, 727
ApeKI GCWGC 2 cut(s) 206, 209
ApoI RAATTY 2 cut(s) 687, 699
Asp700I GAANNNNTTC 1 cut(s) 492
AspLEI GCGC 2 cut(s) 50, 579
AspS9I GGNCC 3 cut(s) 274, 317, 728
AsuHPI GGTGA 1 cut(s) 280
AsuNHI GCTAGC 1 cut(s) 119
AvaII GGWCC 2 cut(s) 274, 317
BalI TGGCCA 1 cut(s) 17
BanI GGYRCC 1 cut(s) 329
BanII GRGCYC 2 cut(s) 188, 828
BarI GAAGNNNNNNTAC 2 cut(s) 231, 263
BauI CACGAG 1 cut(s) 539
Bbv12I GWGCWC 1 cut(s) 828
BbvI GCAGC 2 cut(s) 218, 221
BceAI ACGGC 3 cut(s) 209, 380, 770
BciT130I CCWGG 3 cut(s) 253, 278, 315
BciVI GTATCC 1 cut(s) 903
BcoDI GTCTC 3 cut(s) 68, 383, 714
BfaI CTAG 3 cut(s) 120, 984, 988
BfmI CTRYAG 1 cut(s) 138
BfuAI ACCTGC 2 cut(s) 114, 740
BfuI GTATCC 1 cut(s) 903
BisI GCNGC 4 cut(s) 144, 147, 207, 210
BlsI GCNGC 4 cut(s) 145, 148, 208, 211
Bme1390I CCNGG 3 cut(s) 253, 278, 315
Bme18I GGWCC 2 cut(s) 274, 317
BmgT120I GGNCC 3 cut(s) 274, 317, 728
BmiI GGNNCC 3 cut(s) 319, 331, 505
BmrFI CCNGG 3 cut(s) 253, 278, 315
BmrI ACTGGG 1 cut(s) 725
BmsI GCATC 2 cut(s) 514, 883
BmtI GCTAGC 1 cut(s) 123
BmuI ACTGGG 1 cut(s) 725
Bpu10I CCTNAGC 1 cut(s) 647
BpuEI CTTGAG 1 cut(s) 660
BsaI GGTCTC 2 cut(s) 68, 383
BsaJI CCNNGG 3 cut(s) 251, 270, 344
BsaWI WCCGGW 1 cut(s) 98
Bsc4I CCNNNNNNNGG 4 cut(s) 59, 98, 326, 625
Bse118I RCCGGY 2 cut(s) 290, 374
Bse1I ACTGG 2 cut(s) 453, 731
BseAI TCCGGA 1 cut(s) 98
BseBI CCWGG 3 cut(s) 253, 278, 315
BseDI CCNNGG 3 cut(s) 251, 270, 344
BseGI GGATG 1 cut(s) 585
BseLI CCNNNNNNNGG 4 cut(s) 59, 98, 326, 625
BseMII CTCAG 1 cut(s) 661
BseNI ACTGG 2 cut(s) 453, 731
BseRI GAGGAG 1 cut(s) 581
BseXI GCAGC 2 cut(s) 218, 221
BseYI CCCAGC 1 cut(s) 929
Bsh1236I CGCG 1 cut(s) 48
BshFI GGCC 4 cut(s) 17, 269, 308, 729
BshNI GGYRCC 1 cut(s) 329
BsiHKAI GWGCWC 1 cut(s) 828
BsiSI CCGG 3 cut(s) 99, 291, 375
BslFI GGGAC 1 cut(s) 63
BslI CCNNNNNNNGG 4 cut(s) 59, 98, 326, 625
BsmAI GTCTC 3 cut(s) 68, 383, 714
BsmFI GGGAC 1 cut(s) 63
BsnI GGCC 4 cut(s) 17, 269, 308, 729
Bso31I GGTCTC 2 cut(s) 68, 383
Bsp1286I GDGCHC 2 cut(s) 188, 828
Bsp13I TCCGGA 1 cut(s) 98
Bsp143I GATC 1 cut(s) 244
BspACI CCGC 5 cut(s) 9, 135, 143, 146, 170
BspANI GGCC 4 cut(s) 17, 269, 308, 729
BspCNI CTCAG 1 cut(s) 660
BspEI TCCGGA 1 cut(s) 98
BspFNI CGCG 1 cut(s) 48
BspLI GGNNCC 3 cut(s) 319, 331, 505
BspMI ACCTGC 2 cut(s) 114, 740
BspOI GCTAGC 1 cut(s) 123
BspPI GGATC 1 cut(s) 252
BspQI GCTCTTC 1 cut(s) 363
BspT107I GGYRCC 1 cut(s) 329
BspTNI GGTCTC 2 cut(s) 68, 383
BsrFI RCCGGY 2 cut(s) 290, 374
BsrI ACTGG 2 cut(s) 453, 731
BssAI RCCGGY 2 cut(s) 290, 374
BssECI CCNNGG 3 cut(s) 251, 270, 344
BssMI GATC 1 cut(s) 244
BssSI CACGAG 1 cut(s) 539
BssT1I CCWWGG 2 cut(s) 270, 344
Bst2BI CACGAG 1 cut(s) 539
Bst2UI CCWGG 3 cut(s) 253, 278, 315
Bst4CI ACNGT 2 cut(s) 85, 409
Bst6I CTCTTC 4 cut(s) 146, 234, 363, 427
BstC8I GCNNGC 2 cut(s) 121, 306
BstDEI CTNAG 1 cut(s) 647
BstF5I GGATG 1 cut(s) 585
BstFNI CGCG 1 cut(s) 48
BstHHI GCGC 2 cut(s) 50, 579
BstKTI GATC 1 cut(s) 247
BstMAI GTCTC 3 cut(s) 68, 383, 714
BstMBI GATC 1 cut(s) 244
BstMWI GCNNNNNNNGC 3 cut(s) 143, 791, 926
BstNI CCWGG 3 cut(s) 253, 278, 315
BstSCI CCNGG 3 cut(s) 251, 276, 313
BstSFI CTRYAG 1 cut(s) 138
BstUI CGCG 1 cut(s) 48
BstV1I GCAGC 2 cut(s) 218, 221
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
BsuI GTATCC 1 cut(s) 903
BsuRI GGCC 4 cut(s) 17, 269, 308, 729
BtgZI GCGATG 1 cut(s) 376
BtsCI GGATG 1 cut(s) 585
BtsIMutI CAGTG 1 cut(s) 944
BveI ACCTGC 2 cut(s) 114, 740
Cac8I GCNNGC 2 cut(s) 121, 306
CaiI CAGNNNCTG 1 cut(s) 923
CfoI GCGC 2 cut(s) 50, 579
Cfr10I RCCGGY 2 cut(s) 290, 374
Cfr13I GGNCC 3 cut(s) 274, 317, 728
CsiI ACCWGGT 1 cut(s) 276
Csp6I GTAC 1 cut(s) 583
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CviAII CATG 2 cut(s) 562, 625
CviQI GTAC 1 cut(s) 583
DdeI CTNAG 1 cut(s) 647
DpnI GATC 1 cut(s) 246
DpnII GATC 1 cut(s) 244
EaeI YGGCCR 1 cut(s) 15
Eam1104I CTCTTC 4 cut(s) 146, 234, 363, 427
EarI CTCTTC 4 cut(s) 146, 234, 363, 427
EciI GGCGGA 1 cut(s) 159
Ecl136II GAGCTC 1 cut(s) 826
Eco130I CCWWGG 2 cut(s) 270, 344
Eco147I AGGCCT 1 cut(s) 269
Eco24I GRGCYC 2 cut(s) 188, 828
Eco31I GGTCTC 2 cut(s) 68, 383
Eco47I GGWCC 2 cut(s) 274, 317
Eco53kI GAGCTC 1 cut(s) 826
Eco57I CTGAAG 1 cut(s) 945
EcoICRI GAGCTC 1 cut(s) 826
EcoRII CCWGG 3 cut(s) 251, 276, 313
EcoT14I CCWWGG 2 cut(s) 270, 344
EcoT38I GRGCYC 2 cut(s) 188, 828
ErhI CCWWGG 2 cut(s) 270, 344
FaeI CATG 2 cut(s) 565, 628
FaqI GGGAC 1 cut(s) 63
FatI CATG 2 cut(s) 561, 624
Fnu4HI GCNGC 4 cut(s) 144, 147, 207, 210
FokI GGATG 1 cut(s) 572
FriOI GRGCYC 2 cut(s) 188, 828
Fsp4HI GCNGC 4 cut(s) 144, 147, 207, 210
FspBI CTAG 3 cut(s) 120, 984, 988
FspI TGCGCA 1 cut(s) 578
GlaI GCGC 2 cut(s) 49, 578
GluI GCNGC 4 cut(s) 144, 147, 207, 210
GsaI CCCAGC 1 cut(s) 933
HaeIII GGCC 4 cut(s) 17, 269, 308, 729
HapII CCGG 3 cut(s) 99, 291, 375
HhaI GCGC 2 cut(s) 50, 579
Hin1II CATG 2 cut(s) 565, 628
Hin6I GCGC 2 cut(s) 48, 577
HinP1I GCGC 2 cut(s) 48, 577
HindIII AAGCTT 1 cut(s) 654
HinfI GANTC 6 cut(s) 111, 256, 671, 941, 971, 980
HpaII CCGG 3 cut(s) 99, 291, 375
HphI GGTGA 1 cut(s) 280
Hpy166II GTNNAC 1 cut(s) 288
Hpy188I TCNGA 7 cut(s) 116, 498, 508, 823, 925, 970, 976
Hpy188III TCNNGA 5 cut(s) 99, 260, 403, 649, 705
Hpy8I GTNNAC 1 cut(s) 288
Hpy99I CGWCG 3 cut(s) 178, 181, 184
HpyAV CCTTC 1 cut(s) 259
HpyCH4III ACNGT 2 cut(s) 85, 409
HpyCH4V TGCA 3 cut(s) 474, 544, 896
HpyF10VI GCNNNNNNNGC 3 cut(s) 143, 791, 926
HpyF3I CTNAG 1 cut(s) 647
Hsp92II CATG 2 cut(s) 565, 628
HspAI GCGC 2 cut(s) 48, 577
Kpn2I TCCGGA 1 cut(s) 98
Kzo9I GATC 1 cut(s) 244
LguI GCTCTTC 1 cut(s) 363
LmnI GCTCC 5 cut(s) 45, 101, 509, 831, 857
Lsp1109I GCAGC 2 cut(s) 218, 221
LweI GCATC 2 cut(s) 514, 883
MabI ACCWGGT 1 cut(s) 276
MaeI CTAG 3 cut(s) 120, 984, 988
MaeIII GTNAC 2 cut(s) 298, 880
MalI GATC 1 cut(s) 246
MboI GATC 1 cut(s) 244
MfeI CAATTG 1 cut(s) 35
MflI RGATCY 1 cut(s) 244
MhlI GDGCHC 2 cut(s) 188, 828
MlsI TGGCCA 1 cut(s) 17
MluCI AATT 9 cut(s) 35, 157, 634, 639, 687, 699, 711, 779, 858
MluNI TGGCCA 1 cut(s) 17
MlyI GAGTC 1 cut(s) 120
MmeI TCCRAC 1 cut(s) 531
MnlI CCTC 8 cut(s) 54, 177, 235, 372, 438, 559, 837, 931
Mox20I TGGCCA 1 cut(s) 17
MroI TCCGGA 1 cut(s) 98
MroXI GAANNNNTTC 1 cut(s) 492
MscI TGGCCA 1 cut(s) 17
MseI TTAA 2 cut(s) 638, 857
Msp20I TGGCCA 1 cut(s) 17
MspA1I CMGCKG 1 cut(s) 137
MspI CCGG 3 cut(s) 99, 291, 375
MspR9I CCNGG 3 cut(s) 253, 278, 315
MunI CAATTG 1 cut(s) 35
MvaI CCWGG 3 cut(s) 253, 278, 315
MvnI CGCG 1 cut(s) 48
MwoI GCNNNNNNNGC 3 cut(s) 143, 791, 926
NdeII GATC 1 cut(s) 244
NheI GCTAGC 1 cut(s) 119
NlaIII CATG 2 cut(s) 565, 628
NlaIV GGNNCC 3 cut(s) 319, 331, 505
NmuCI GTSAC 1 cut(s) 298
NsbI TGCGCA 1 cut(s) 578
PceI AGGCCT 1 cut(s) 269
PciSI GCTCTTC 1 cut(s) 363
PdmI GAANNNNTTC 1 cut(s) 492
PfeI GAWTC 5 cut(s) 256, 671, 941, 971, 980
PfoI TCCNGGA 1 cut(s) 313
PkrI GCNGC 4 cut(s) 145, 148, 208, 211
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
Psp124BI GAGCTC 1 cut(s) 828
Psp6I CCWGG 3 cut(s) 251, 276, 313
PspFI CCCAGC 1 cut(s) 929
PspGI CCWGG 3 cut(s) 251, 276, 313
PspN4I GGNNCC 3 cut(s) 319, 331, 505
PspPI GGNCC 3 cut(s) 274, 317, 728
PstNI CAGNNNCTG 1 cut(s) 923
PsuI RGATCY 1 cut(s) 244
RsaI GTAC 1 cut(s) 584
RsaNI GTAC 1 cut(s) 583
SacI GAGCTC 1 cut(s) 828
SapI GCTCTTC 1 cut(s) 363
SaqAI TTAA 2 cut(s) 638, 857
SatI GCNGC 4 cut(s) 144, 147, 207, 210
Sau3AI GATC 1 cut(s) 244
Sau96I GGNCC 3 cut(s) 274, 317, 728
SchI GAGTC 1 cut(s) 120
ScrFI CCNGG 3 cut(s) 253, 278, 315
SduI GDGCHC 2 cut(s) 188, 828
SexAI ACCWGGT 1 cut(s) 276
SfaNI GCATC 2 cut(s) 514, 883
SfcI CTRYAG 1 cut(s) 138
SinI GGWCC 2 cut(s) 274, 317
SmlI CTYRAG 1 cut(s) 675
SmoI CTYRAG 1 cut(s) 675
Sse9I AATT 9 cut(s) 35, 157, 634, 639, 687, 699, 711, 779, 858
SseBI AGGCCT 1 cut(s) 269
SsiI CCGC 5 cut(s) 9, 135, 143, 146, 170
SspI AATATT 1 cut(s) 873
SspMI CTAG 3 cut(s) 120, 984, 988
SstI GAGCTC 1 cut(s) 828
StuI AGGCCT 1 cut(s) 269
StyD4I CCNGG 3 cut(s) 251, 276, 313
StyI CCWWGG 2 cut(s) 270, 344
TaaI ACNGT 2 cut(s) 85, 409
TaqI TCGA 3 cut(s) 430, 666, 842
TasI AATT 9 cut(s) 35, 157, 634, 639, 687, 699, 711, 779, 858
TatI WGTACW 1 cut(s) 582
TauI GCSGC 2 cut(s) 146, 149
TfiI GAWTC 5 cut(s) 256, 671, 941, 971, 980
Tru1I TTAA 2 cut(s) 638, 857
Tru9I TTAA 2 cut(s) 638, 857
TscAI CASTG 1 cut(s) 951
TseFI GTSAC 1 cut(s) 298
TseI GCWGC 2 cut(s) 206, 209
Tsp45I GTSAC 1 cut(s) 298
TspDTI ATGAA 3 cut(s) 618, 711, 903
TspGWI ACGGA 2 cut(s) 578, 922
TspRI CASTG 1 cut(s) 951
VpaK11BI GGWCC 2 cut(s) 274, 317
XapI RAATTY 2 cut(s) 687, 699
XmnI GAANNNNTTC 1 cut(s) 492
XspI CTAG 3 cut(s) 120, 984, 988
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.