Rmu_sc0000310.1_g000018

RNA splicing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000310.1
OG0002800
Physical Location & Seq
Forward (+)
59514 .. 59942
429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000310.1_g000018.1.cds

Sequence Viewer

Length: 348 bp
ctggtggagttcaccggctctgtcacgcaggccattcctggacccagagatggcaccagctccctcccttggattttggctcttcctctcgcttatgccggtctcaattttgtcatcgccgttgtcaagaccgtcaaaaagttctcttcccctcgacataaacgcaagaaactggtcaataaaaatgctatgctatgcaaatcaatagacgaaatgtttcagaatggcttcgaccaaatcaagcctgatgccctgaaacaactcgtgcaaaatgtacatgcattagttttttatagttacaactcagcatacttacattatcatctcactgctggaccaaggaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.86

Weight (kDa)

9.9

Isoelectric Point (pI)

31.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 53
AfaI GTAC 1 cut(s) 276
AfiI CCNNNNNNNGG 2 cut(s) 50, 69
AjnI CCWGG 1 cut(s) 37
AluBI AGCT 1 cut(s) 60
AluI AGCT 1 cut(s) 60
Alw26I GTCTC 1 cut(s) 107
AoxI GGCC 1 cut(s) 30
Asp700I GAANNNNTTC 2 cut(s) 216, 227
AspS9I GGNCC 2 cut(s) 41, 335
AsuHPI GGTGA 1 cut(s) 4
AvaII GGWCC 2 cut(s) 41, 335
BanI GGYRCC 1 cut(s) 53
BauI CACGAG 1 cut(s) 263
BccI CCATC 1 cut(s) 44
BceAI ACGGC 1 cut(s) 104
BciT130I CCWGG 1 cut(s) 39
BcoDI GTCTC 1 cut(s) 107
Bme1390I CCNGG 1 cut(s) 39
Bme18I GGWCC 2 cut(s) 41, 335
BmgT120I GGNCC 2 cut(s) 41, 335
BmiI GGNNCC 2 cut(s) 43, 55
BmrFI CCNGG 1 cut(s) 39
BmsI GCATC 1 cut(s) 238
BsaI GGTCTC 1 cut(s) 107
BsaJI CCNNGG 2 cut(s) 68, 338
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 69
Bse118I RCCGGY 2 cut(s) 14, 98
Bse1I ACTGG 1 cut(s) 177
BseBI CCWGG 1 cut(s) 39
BseDI CCNNGG 2 cut(s) 68, 338
BseLI CCNNNNNNNGG 2 cut(s) 50, 69
BseMII CTCAG 1 cut(s) 318
BseNI ACTGG 1 cut(s) 177
BshFI GGCC 1 cut(s) 32
BshNI GGYRCC 1 cut(s) 53
BsiSI CCGG 2 cut(s) 15, 99
BslI CCNNNNNNNGG 2 cut(s) 50, 69
BsmAI GTCTC 1 cut(s) 107
BsnI GGCC 1 cut(s) 32
Bso31I GGTCTC 1 cut(s) 107
Bsp1407I TGTACA 1 cut(s) 274
BspANI GGCC 1 cut(s) 32
BspCNI CTCAG 1 cut(s) 317
BspLI GGNNCC 2 cut(s) 43, 55
BspQI GCTCTTC 1 cut(s) 87
BspT107I GGYRCC 1 cut(s) 53
BspTNI GGTCTC 1 cut(s) 107
BsrFI RCCGGY 2 cut(s) 14, 98
BsrGI TGTACA 1 cut(s) 274
BsrI ACTGG 1 cut(s) 177
BssAI RCCGGY 2 cut(s) 14, 98
BssECI CCNNGG 2 cut(s) 68, 338
BssSI CACGAG 1 cut(s) 263
BssT1I CCWWGG 2 cut(s) 68, 338
Bst2BI CACGAG 1 cut(s) 263
Bst2UI CCWGG 1 cut(s) 39
Bst4CI ACNGT 1 cut(s) 133
Bst6I CTCTTC 2 cut(s) 87, 151
BstAUI TGTACA 1 cut(s) 274
BstC8I GCNNGC 1 cut(s) 30
BstDEI CTNAG 1 cut(s) 304
BstMAI GTCTC 1 cut(s) 107
BstNI CCWGG 1 cut(s) 39
BstNSI RCATGY 1 cut(s) 281
BstSCI CCNGG 1 cut(s) 37
BsuRI GGCC 1 cut(s) 32
BtgZI GCGATG 1 cut(s) 100
BtsI GCAGTG 1 cut(s) 327
BtsIMutI CAGTG 1 cut(s) 327
Cac8I GCNNGC 1 cut(s) 30
Cfr10I RCCGGY 2 cut(s) 14, 98
Cfr13I GGNCC 2 cut(s) 41, 335
Csp6I GTAC 1 cut(s) 275
CviAII CATG 1 cut(s) 278
CviJI RGCY 6 cut(s) 18, 32, 60, 80, 228, 244
CviKI_1 RGCY 6 cut(s) 18, 32, 60, 80, 228, 244
CviQI GTAC 1 cut(s) 275
DdeI CTNAG 1 cut(s) 304
Eam1104I CTCTTC 2 cut(s) 87, 151
EarI CTCTTC 2 cut(s) 87, 151
Eco130I CCWWGG 2 cut(s) 68, 338
Eco31I GGTCTC 1 cut(s) 107
Eco47I GGWCC 2 cut(s) 41, 335
EcoRII CCWGG 1 cut(s) 37
EcoT14I CCWWGG 2 cut(s) 68, 338
EcoT22I ATGCAT 1 cut(s) 283
ErhI CCWWGG 2 cut(s) 68, 338
FaeI CATG 1 cut(s) 281
FaiI YATR 7 cut(s) 96, 159, 191, 196, 279, 294, 310
FatI CATG 1 cut(s) 277
HaeIII GGCC 1 cut(s) 32
HapII CCGG 2 cut(s) 15, 99
Hin1II CATG 1 cut(s) 281
HpaII CCGG 2 cut(s) 15, 99
HphI GGTGA 1 cut(s) 4
Hpy166II GTNNAC 1 cut(s) 12
Hpy188I TCNGA 1 cut(s) 222
Hpy188III TCNNGA 1 cut(s) 127
Hpy8I GTNNAC 1 cut(s) 12
HpyCH4III ACNGT 1 cut(s) 133
HpyCH4V TGCA 3 cut(s) 198, 268, 281
HpyF3I CTNAG 1 cut(s) 304
Hsp92II CATG 1 cut(s) 281
LguI GCTCTTC 1 cut(s) 87
LmnI GCTCC 1 cut(s) 65
LweI GCATC 1 cut(s) 238
MaeIII GTNAC 2 cut(s) 22, 296
MboII GAAGA 2 cut(s) 74, 138
MluCI AATT 1 cut(s) 106
MnlI CCTC 3 cut(s) 74, 96, 162
Mph1103I ATGCAT 1 cut(s) 283
MroXI GAANNNNTTC 2 cut(s) 216, 227
MspI CCGG 2 cut(s) 15, 99
MspR9I CCNGG 1 cut(s) 39
MvaI CCWGG 1 cut(s) 39
NlaIII CATG 1 cut(s) 281
NlaIV GGNNCC 2 cut(s) 43, 55
NmuCI GTSAC 1 cut(s) 22
NsiI ATGCAT 1 cut(s) 283
NspI RCATGY 1 cut(s) 281
PciSI GCTCTTC 1 cut(s) 87
PdmI GAANNNNTTC 2 cut(s) 216, 227
PfoI TCCNGGA 1 cut(s) 37
Psp6I CCWGG 1 cut(s) 37
PspGI CCWGG 1 cut(s) 37
PspN4I GGNNCC 2 cut(s) 43, 55
PspPI GGNCC 2 cut(s) 41, 335
RsaI GTAC 1 cut(s) 276
RsaNI GTAC 1 cut(s) 275
SapI GCTCTTC 1 cut(s) 87
Sau96I GGNCC 2 cut(s) 41, 335
ScrFI CCNGG 1 cut(s) 39
SetI ASST 1 cut(s) 62
SfaNI GCATC 1 cut(s) 238
SinI GGWCC 2 cut(s) 41, 335
Sse9I AATT 1 cut(s) 106
StyD4I CCNGG 1 cut(s) 37
StyI CCWWGG 2 cut(s) 68, 338
TaaI ACNGT 1 cut(s) 133
TaqI TCGA 2 cut(s) 154, 231
TasI AATT 1 cut(s) 106
TatI WGTACW 1 cut(s) 274
TscAI CASTG 1 cut(s) 334
TseFI GTSAC 1 cut(s) 22
Tsp45I GTSAC 1 cut(s) 22
TspRI CASTG 1 cut(s) 334
VpaK11BI GGWCC 2 cut(s) 41, 335
XceI RCATGY 1 cut(s) 281
XmnI GAANNNNTTC 2 cut(s) 216, 227
Zsp2I ATGCAT 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.