Rh6DG105200

RNA splicing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0002800
Physical Location & Seq
Forward (+)
13351565 .. 13354663
3099 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG105200.1

Sequence Viewer

Length: 570 bp
ATGTTTCAGAATGGCTCCGACCAAATCACTCCTGATGCCCTGAAACAACTCGTGCAAAATACAGGTTTTGGCATGGAGGAGGTTTTGCGCAAGTACATCCATTATACTTTGAATGAAAAGCCATTCAACCCAGACATGGTTTCCAATTTAATTCAGCTCAGAAAAGCTTCTTTGTTCGATGATTCTCAGGTGGCTGAAATTCTAAATGAAATTTCAAGAAGAATTGTGCGAGACAAAGGCCGAGTTGTAATGGATATGGCAGGTTATACTGAACGGGGTTTCAAAAGAAAATTAGCCATTCAAGCCCTATATGGAAAGGTGTTCTATCTGTCAGAGGTTATGGCATTGATGATAACTGTGACATATCTATTATTGATGGCCATTGTTAATTACCTGCTTGGTTGTCTAGGCCTCACCTTGGACTTATTTGATATGCATATAAACAAGGCTCTCTACACATTCAGTGGAACATATTTTTGGGAACTGTTTTTGCAAAGTGAAATTATTTCACCACTGCTAAGGACAAATGGGAAACTTAATTTGGTTCACACAGCACAAATCTCTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

21.65

Weight (kDa)

7.81

Isoelectric Point (pI)

41.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARMH5 PF22915 21 - 112 4.3e-39 Armadillo-like helical domain-containing protein 5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 89
Acc36I ACCTGC 2 cut(s) 251, 402
AcoI YGGCCR 1 cut(s) 378
AcsI RAATTY 2 cut(s) 198, 210
AfaI GTAC 1 cut(s) 95
AfiI CCNNNNNNNGG 2 cut(s) 136, 418
AgsI TTSAA 5 cut(s) 112, 127, 216, 283, 302
AjuI GAANNNNNNNTTGG 4 cut(s) 460, 492, 524, 556
AluBI AGCT 2 cut(s) 157, 167
AluI AGCT 2 cut(s) 157, 167
Alw26I GTCTC 1 cut(s) 225
AoxI GGCC 3 cut(s) 238, 378, 409
ApoI RAATTY 2 cut(s) 198, 210
Asp700I GAANNNNTTC 1 cut(s) 166
AspLEI GCGC 1 cut(s) 90
AsuHPI GGTGA 2 cut(s) 406, 501
BalI TGGCCA 1 cut(s) 380
BauI CACGAG 1 cut(s) 50
BccI CCATC 1 cut(s) 370
BcoDI GTCTC 1 cut(s) 225
BfaI CTAG 1 cut(s) 407
BfuAI ACCTGC 2 cut(s) 251, 402
BmiI GGNNCC 1 cut(s) 16
BmsI GCATC 1 cut(s) 25
Bpu10I CCTNAGC 1 cut(s) 518
BsaJI CCNNGG 1 cut(s) 417
Bsc4I CCNNNNNNNGG 2 cut(s) 136, 418
BseDI CCNNGG 1 cut(s) 417
BseGI GGATG 1 cut(s) 96
BseLI CCNNNNNNNGG 2 cut(s) 136, 418
BseMII CTCAG 2 cut(s) 172, 200
BseRI GAGGAG 1 cut(s) 92
BshFI GGCC 3 cut(s) 240, 380, 411
BslI CCNNNNNNNGG 2 cut(s) 136, 418
BsmAI GTCTC 1 cut(s) 225
BsnI GGCC 3 cut(s) 240, 380, 411
BspANI GGCC 3 cut(s) 240, 380, 411
BspCNI CTCAG 2 cut(s) 171, 199
BspLI GGNNCC 1 cut(s) 16
BspMI ACCTGC 2 cut(s) 251, 402
BssECI CCNNGG 1 cut(s) 417
BssSI CACGAG 1 cut(s) 50
BssT1I CCWWGG 1 cut(s) 417
Bst2BI CACGAG 1 cut(s) 50
Bst4CI ACNGT 2 cut(s) 358, 486
BstDEI CTNAG 4 cut(s) 158, 186, 518, 567
BstF5I GGATG 1 cut(s) 96
BstHHI GCGC 1 cut(s) 90
BstMAI GTCTC 1 cut(s) 225
BstMWI GCNNNNNNNGC 1 cut(s) 302
BsuRI GGCC 3 cut(s) 240, 380, 411
BtsCI GGATG 1 cut(s) 96
BtsI GCAGTG 1 cut(s) 512
BtsIMutI CAGTG 2 cut(s) 469, 512
BveI ACCTGC 2 cut(s) 251, 402
CfoI GCGC 1 cut(s) 90
Csp6I GTAC 1 cut(s) 94
CviAII CATG 2 cut(s) 73, 136
CviQI GTAC 1 cut(s) 94
DdeI CTNAG 4 cut(s) 158, 186, 518, 567
EaeI YGGCCR 1 cut(s) 378
Eco130I CCWWGG 1 cut(s) 417
Eco147I AGGCCT 1 cut(s) 411
EcoT14I CCWWGG 1 cut(s) 417
EcoT22I ATGCAT 1 cut(s) 438
ErhI CCWWGG 1 cut(s) 417
FaeI CATG 2 cut(s) 76, 139
FatI CATG 2 cut(s) 72, 135
FokI GGATG 1 cut(s) 83
FspBI CTAG 1 cut(s) 407
FspI TGCGCA 1 cut(s) 89
GlaI GCGC 1 cut(s) 89
HaeIII GGCC 3 cut(s) 240, 380, 411
HhaI GCGC 1 cut(s) 90
Hin1II CATG 2 cut(s) 76, 139
Hin6I GCGC 1 cut(s) 88
HinP1I GCGC 1 cut(s) 88
HindIII AAGCTT 1 cut(s) 165
HinfI GANTC 1 cut(s) 182
HphI GGTGA 2 cut(s) 406, 501
Hpy166II GTNNAC 1 cut(s) 547
Hpy188I TCNGA 4 cut(s) 9, 19, 161, 334
Hpy188III TCNNGA 2 cut(s) 32, 216
Hpy8I GTNNAC 1 cut(s) 547
HpyCH4III ACNGT 2 cut(s) 358, 486
HpyCH4V TGCA 3 cut(s) 55, 436, 493
HpyF10VI GCNNNNNNNGC 1 cut(s) 302
HpyF3I CTNAG 4 cut(s) 158, 186, 518, 567
Hsp92II CATG 2 cut(s) 76, 139
HspAI GCGC 1 cut(s) 88
LmnI GCTCC 1 cut(s) 20
LpnPI CCDG 7 cut(s) 45, 48, 53, 144, 173, 246, 407
LweI GCATC 1 cut(s) 25
MaeI CTAG 1 cut(s) 407
MaeIII GTNAC 1 cut(s) 358
MboII GAAGA 2 cut(s) 231, 555
MlsI TGGCCA 1 cut(s) 380
MluCI AATT 9 cut(s) 145, 150, 198, 210, 222, 290, 388, 501, 538
MluNI TGGCCA 1 cut(s) 380
MmeI TCCRAC 1 cut(s) 42
MnlI CCTC 4 cut(s) 70, 73, 328, 422
Mox20I TGGCCA 1 cut(s) 380
Mph1103I ATGCAT 1 cut(s) 438
MroXI GAANNNNTTC 1 cut(s) 166
MscI TGGCCA 1 cut(s) 380
MseI TTAA 3 cut(s) 149, 387, 537
Msp20I TGGCCA 1 cut(s) 380
MwoI GCNNNNNNNGC 1 cut(s) 302
NlaIII CATG 2 cut(s) 76, 139
NlaIV GGNNCC 1 cut(s) 16
NmeAIII GCCGAG 1 cut(s) 266
NmuCI GTSAC 1 cut(s) 358
NsbI TGCGCA 1 cut(s) 89
NsiI ATGCAT 1 cut(s) 438
PceI AGGCCT 1 cut(s) 411
PdmI GAANNNNTTC 1 cut(s) 166
PfeI GAWTC 1 cut(s) 182
PspN4I GGNNCC 1 cut(s) 16
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
SaqAI TTAA 3 cut(s) 149, 387, 537
SfaNI GCATC 1 cut(s) 25
Sse9I AATT 9 cut(s) 145, 150, 198, 210, 222, 290, 388, 501, 538
SseBI AGGCCT 1 cut(s) 411
SspMI CTAG 1 cut(s) 407
StuI AGGCCT 1 cut(s) 411
StyI CCWWGG 1 cut(s) 417
TaaI ACNGT 2 cut(s) 358, 486
TaqI TCGA 1 cut(s) 177
TasI AATT 9 cut(s) 145, 150, 198, 210, 222, 290, 388, 501, 538
TatI WGTACW 1 cut(s) 93
TfiI GAWTC 1 cut(s) 182
Tru1I TTAA 3 cut(s) 149, 387, 537
Tru9I TTAA 3 cut(s) 149, 387, 537
TscAI CASTG 2 cut(s) 469, 519
TseFI GTSAC 1 cut(s) 358
Tsp45I GTSAC 1 cut(s) 358
TspDTI ATGAA 2 cut(s) 129, 222
TspRI CASTG 2 cut(s) 469, 519
XapI RAATTY 2 cut(s) 198, 210
XmnI GAANNNNTTC 1 cut(s) 166
XspI CTAG 1 cut(s) 407
Zsp2I ATGCAT 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.