Rw1G002360

RNA splicing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0002800
Physical Location & Seq
Forward (+)
4231078 .. 4234836
3759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G002360.1

Sequence Viewer

Length: 984 bp
ATGGCTTCTGCTTTGGCCACTTCCTTTGCTTCCCAATTGCTCCCTCGCGCCCCGCCTAAAGGTCTCCCTTTGCTTCGTCCCACAGTCGCACCTGTGTCTGTAGCTGTGAGAGTCCGAGCTAGCAGGCCGTTATTCCCTGTGGCGGCGGCGAAGAGTAATTCCAATCCTCAGCCGACGACGAGGAGCCCTAACAAAAGCAGTAAAGCAGCAGAAGAAGAAGAAGCCAAGGCCTTGGACCTGGTGGAGTTCACCAGCTCTGTCACGCAGGCCATTCCTGGACCCAGAGTTGGCACCAGCTCCCTCCCTTGGATTTTGGCTCTTCCTCTCGCTTATGCCGGTCTCAATTTTGTCATCGCCGTTGTCAAGACCGTCAAAAAGTTCTCTTCCCCTCGACATAAACACAAGAAACTGGTCAATAAAAATGCTATGTTATGCAAATCAATAGACGAAATGTTTCAGAATGGCTCCGACCAAATCACGCATGATGCCCTGAAACAACTAGTGCAAAATGTTTTGGCATGGAGGAGTTTTTTGTGCAAGTACATCCGTTATACTTTGAATGAAAAGCCATTCAACTCAGACATGGTTTCCAATTTAATTCAGCTCAGGAAAGCTTCTTTGTTCGATGATTCTCAGGTGGCTAAAATTCTAAATGAAATTTCAAGAAGAATTGTGCGAGACAAAGGCCCAGTTGTAATGGATATGGCAGGTTATACTGAACAGGGTTTCAAAAGAAAATTAGCCGTTCAAGCCATATATGGAAAGGTGTTCTATCTGTCAGAGGTCATCAGAACAGAGTTCTGCACTAGATTATTCTTTGCATTGTCTGCAGGACAAATGGGAAACTTAATTTGGTTCACACAACACAAATCTCTTCTTAGCAAAGAAGGGGACAACCTGTTCCCCAATTGCTCTTGGACAAGAGTATTGGTTGCCCATTCTTACTGGTGCCAACACCAGGCTTGTCCTAAGGATCACAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

327

Amino Acids

36.49

Weight (kDa)

9.92

Isoelectric Point (pI)

42.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARMH5 PF22915 177 - 261 4.1e-34 Armadillo-like helical domain-containing protein 5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 698
AccB1I GGYRCC 2 cut(s) 290, 948
AccII CGCG 1 cut(s) 48
AciI CCGC 3 cut(s) 53, 143, 146
AclWI GGATC 1 cut(s) 981
AcoI YGGCCR 1 cut(s) 15
AcsI RAATTY 2 cut(s) 645, 657
AfaI GTAC 1 cut(s) 542
AfiI CCNNNNNNNGG 5 cut(s) 59, 142, 287, 306, 958
AgsI TTSAA 5 cut(s) 559, 574, 663, 730, 749
AhlI ACTAGT 1 cut(s) 499
AjnI CCWGG 3 cut(s) 237, 274, 957
AjuI GAANNNNNNNTTGG 2 cut(s) 835, 867
AloI GAACNNNNNNTCC 2 cut(s) 884, 916
AluBI AGCT 6 cut(s) 104, 119, 255, 297, 604, 614
AluI AGCT 6 cut(s) 104, 119, 255, 297, 604, 614
Alw26I GTCTC 3 cut(s) 68, 344, 672
AlwI GGATC 1 cut(s) 981
AoxI GGCC 5 cut(s) 15, 125, 228, 267, 685
ApeKI GCWGC 1 cut(s) 206
ApoI RAATTY 2 cut(s) 645, 657
Asp700I GAANNNNTTC 1 cut(s) 453
AspLEI GCGC 1 cut(s) 50
AspS9I GGNCC 3 cut(s) 235, 278, 686
AsuHPI GGTGA 1 cut(s) 241
AsuNHI GCTAGC 1 cut(s) 119
AvaII GGWCC 2 cut(s) 235, 278
AxyI CCTNAGG 1 cut(s) 969
BalI TGGCCA 1 cut(s) 17
BanI GGYRCC 2 cut(s) 290, 948
BanII GRGCYC 1 cut(s) 188
BbvCI CCTCAGC 1 cut(s) 168
BbvI GCAGC 1 cut(s) 218
BceAI ACGGC 3 cut(s) 112, 341, 728
BciT130I CCWGG 3 cut(s) 239, 276, 959
BcoDI GTCTC 3 cut(s) 68, 344, 672
BcuI ACTAGT 1 cut(s) 499
BfaI CTAG 3 cut(s) 120, 500, 807
BfmI CTRYAG 2 cut(s) 99, 828
BfuAI ACCTGC 1 cut(s) 698
BisI GCNGC 3 cut(s) 144, 147, 207
BlsI GCNGC 3 cut(s) 145, 148, 208
Bme1390I CCNGG 3 cut(s) 239, 276, 959
Bme18I GGWCC 2 cut(s) 235, 278
BmgT120I GGNCC 3 cut(s) 235, 278, 686
BmiI GGNNCC 5 cut(s) 185, 280, 292, 466, 950
BmrFI CCNGG 3 cut(s) 239, 276, 959
BmrI ACTGGG 1 cut(s) 683
BmsI GCATC 1 cut(s) 475
BmtI GCTAGC 1 cut(s) 123
BmuI ACTGGG 1 cut(s) 683
Bpu10I CCTNAGC 2 cut(s) 168, 605
BsaI GGTCTC 2 cut(s) 68, 344
BsaJI CCNNGG 3 cut(s) 225, 231, 305
Bsc4I CCNNNNNNNGG 5 cut(s) 59, 142, 287, 306, 958
Bse118I RCCGGY 1 cut(s) 335
Bse1I ACTGG 3 cut(s) 414, 689, 950
Bse21I CCTNAGG 1 cut(s) 969
BseBI CCWGG 3 cut(s) 239, 276, 959
BseDI CCNNGG 3 cut(s) 225, 231, 305
BseGI GGATG 1 cut(s) 543
BseLI CCNNNNNNNGG 5 cut(s) 59, 142, 287, 306, 958
BseMII CTCAG 4 cut(s) 182, 591, 619, 647
BseNI ACTGG 3 cut(s) 414, 689, 950
BseRI GAGGAG 2 cut(s) 196, 538
BseXI GCAGC 1 cut(s) 218
BsgI GTGCAG 1 cut(s) 787
Bsh1236I CGCG 1 cut(s) 48
BshFI GGCC 5 cut(s) 17, 127, 230, 269, 687
BshNI GGYRCC 2 cut(s) 290, 948
BsiSI CCGG 1 cut(s) 336
BslFI GGGAC 2 cut(s) 63, 905
BslI CCNNNNNNNGG 5 cut(s) 59, 142, 287, 306, 958
BsmAI GTCTC 3 cut(s) 68, 344, 672
BsmFI GGGAC 2 cut(s) 63, 905
BsnI GGCC 5 cut(s) 17, 127, 230, 269, 687
Bso31I GGTCTC 2 cut(s) 68, 344
Bsp1286I GDGCHC 1 cut(s) 188
Bsp143I GATC 1 cut(s) 973
BspACI CCGC 3 cut(s) 53, 143, 146
BspANI GGCC 5 cut(s) 17, 127, 230, 269, 687
BspCNI CTCAG 4 cut(s) 181, 590, 618, 646
BspFNI CGCG 1 cut(s) 48
BspLI GGNNCC 5 cut(s) 185, 280, 292, 466, 950
BspMAI CTGCAG 1 cut(s) 832
BspMI ACCTGC 1 cut(s) 698
BspOI GCTAGC 1 cut(s) 123
BspPI GGATC 1 cut(s) 981
BspQI GCTCTTC 1 cut(s) 324
BspT107I GGYRCC 2 cut(s) 290, 948
BspTNI GGTCTC 2 cut(s) 68, 344
BsrFI RCCGGY 1 cut(s) 335
BsrI ACTGG 3 cut(s) 414, 689, 950
BssAI RCCGGY 1 cut(s) 335
BssECI CCNNGG 3 cut(s) 225, 231, 305
BssMI GATC 1 cut(s) 973
BssT1I CCWWGG 3 cut(s) 225, 231, 305
Bst2UI CCWGG 3 cut(s) 239, 276, 959
Bst4CI ACNGT 2 cut(s) 85, 370
Bst6I CTCTTC 4 cut(s) 146, 324, 388, 879
BstAPI GCANNNNNTGC 1 cut(s) 827
BstC8I GCNNGC 3 cut(s) 121, 125, 267
BstDEI CTNAG 6 cut(s) 168, 577, 605, 633, 878, 969
BstF5I GGATG 1 cut(s) 543
BstFNI CGCG 1 cut(s) 48
BstHHI GCGC 1 cut(s) 50
BstKTI GATC 1 cut(s) 976
BstMAI GTCTC 3 cut(s) 68, 344, 672
BstMBI GATC 1 cut(s) 973
BstMWI GCNNNNNNNGC 2 cut(s) 749, 827
BstNI CCWGG 3 cut(s) 239, 276, 959
BstSCI CCNGG 3 cut(s) 237, 274, 957
BstSFI CTRYAG 2 cut(s) 99, 828
BstUI CGCG 1 cut(s) 48
BstV1I GCAGC 1 cut(s) 218
BstXI CCANNNNNNTGG 1 cut(s) 232
Bsu36I CCTNAGG 1 cut(s) 969
BsuRI GGCC 5 cut(s) 17, 127, 230, 269, 687
BtgZI GCGATG 1 cut(s) 337
BtsCI GGATG 1 cut(s) 543
BveI ACCTGC 1 cut(s) 698
Cac8I GCNNGC 3 cut(s) 121, 125, 267
CfoI GCGC 1 cut(s) 50
Cfr10I RCCGGY 1 cut(s) 335
Cfr13I GGNCC 3 cut(s) 235, 278, 686
CsiI ACCWGGT 1 cut(s) 237
Csp6I GTAC 1 cut(s) 541
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CviAII CATG 3 cut(s) 482, 519, 583
CviQI GTAC 1 cut(s) 541
DdeI CTNAG 6 cut(s) 168, 577, 605, 633, 878, 969
DpnI GATC 1 cut(s) 975
DpnII GATC 1 cut(s) 973
EaeI YGGCCR 1 cut(s) 15
Eam1104I CTCTTC 4 cut(s) 146, 324, 388, 879
EarI CTCTTC 4 cut(s) 146, 324, 388, 879
Eco130I CCWWGG 3 cut(s) 225, 231, 305
Eco147I AGGCCT 1 cut(s) 230
Eco24I GRGCYC 1 cut(s) 188
Eco31I GGTCTC 2 cut(s) 68, 344
Eco47I GGWCC 2 cut(s) 235, 278
Eco81I CCTNAGG 1 cut(s) 969
EcoRII CCWGG 3 cut(s) 237, 274, 957
EcoT14I CCWWGG 3 cut(s) 225, 231, 305
EcoT38I GRGCYC 1 cut(s) 188
ErhI CCWWGG 3 cut(s) 225, 231, 305
FaeI CATG 3 cut(s) 485, 522, 586
FaqI GGGAC 2 cut(s) 63, 905
FatI CATG 3 cut(s) 481, 518, 582
FauI CCCGC 1 cut(s) 60
Fnu4HI GCNGC 3 cut(s) 144, 147, 207
FokI GGATG 1 cut(s) 530
FriOI GRGCYC 1 cut(s) 188
Fsp4HI GCNGC 3 cut(s) 144, 147, 207
FspBI CTAG 3 cut(s) 120, 500, 807
GlaI GCGC 1 cut(s) 49
GluI GCNGC 3 cut(s) 144, 147, 207
HaeIII GGCC 5 cut(s) 17, 127, 230, 269, 687
HapII CCGG 1 cut(s) 336
HhaI GCGC 1 cut(s) 50
Hin1II CATG 3 cut(s) 485, 522, 586
Hin6I GCGC 1 cut(s) 48
HinP1I GCGC 1 cut(s) 48
HindIII AAGCTT 1 cut(s) 612
HinfI GANTC 2 cut(s) 111, 629
HpaII CCGG 1 cut(s) 336
HphI GGTGA 1 cut(s) 241
Hpy166II GTNNAC 2 cut(s) 249, 858
Hpy188I TCNGA 6 cut(s) 116, 459, 469, 580, 781, 791
Hpy188III TCNNGA 3 cut(s) 364, 607, 663
Hpy8I GTNNAC 2 cut(s) 249, 858
Hpy99I CGWCG 2 cut(s) 178, 181
HpyAV CCTTC 1 cut(s) 881
HpyCH4III ACNGT 2 cut(s) 85, 370
HpyCH4V TGCA 6 cut(s) 435, 505, 537, 804, 821, 830
HpyF10VI GCNNNNNNNGC 2 cut(s) 749, 827
HpyF3I CTNAG 6 cut(s) 168, 577, 605, 633, 878, 969
Hsp92II CATG 3 cut(s) 485, 522, 586
HspAI GCGC 1 cut(s) 48
Kzo9I GATC 1 cut(s) 973
LguI GCTCTTC 1 cut(s) 324
LmnI GCTCC 4 cut(s) 45, 183, 302, 470
Lsp1109I GCAGC 1 cut(s) 218
LweI GCATC 1 cut(s) 475
MabI ACCWGGT 1 cut(s) 237
MaeI CTAG 3 cut(s) 120, 500, 807
MaeIII GTNAC 1 cut(s) 259
MalI GATC 1 cut(s) 975
MboI GATC 1 cut(s) 973
MboII GAAGA 8 cut(s) 163, 224, 227, 230, 311, 375, 678, 866
MfeI CAATTG 2 cut(s) 35, 907
MhlI GDGCHC 1 cut(s) 188
MlsI TGGCCA 1 cut(s) 17
MluNI TGGCCA 1 cut(s) 17
MlyI GAGTC 1 cut(s) 120
MmeI TCCRAC 1 cut(s) 492
MnlI CCTC 8 cut(s) 54, 174, 177, 311, 333, 399, 516, 775
Mox20I TGGCCA 1 cut(s) 17
MroXI GAANNNNTTC 1 cut(s) 453
MscI TGGCCA 1 cut(s) 17
MseI TTAA 2 cut(s) 596, 848
Msp20I TGGCCA 1 cut(s) 17
MspI CCGG 1 cut(s) 336
MspR9I CCNGG 3 cut(s) 239, 276, 959
MunI CAATTG 2 cut(s) 35, 907
MvaI CCWGG 3 cut(s) 239, 276, 959
MvnI CGCG 1 cut(s) 48
MwoI GCNNNNNNNGC 2 cut(s) 749, 827
NdeII GATC 1 cut(s) 973
NheI GCTAGC 1 cut(s) 119
NlaIII CATG 3 cut(s) 485, 522, 586
NlaIV GGNNCC 5 cut(s) 185, 280, 292, 466, 950
NmuCI GTSAC 1 cut(s) 259
PceI AGGCCT 1 cut(s) 230
PciSI GCTCTTC 1 cut(s) 324
PdmI GAANNNNTTC 1 cut(s) 453
PfeI GAWTC 1 cut(s) 629
PfoI TCCNGGA 1 cut(s) 274
PkrI GCNGC 3 cut(s) 145, 148, 208
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
Psp6I CCWGG 3 cut(s) 237, 274, 957
PspGI CCWGG 3 cut(s) 237, 274, 957
PspN4I GGNNCC 5 cut(s) 185, 280, 292, 466, 950
PspPI GGNCC 3 cut(s) 235, 278, 686
PstI CTGCAG 1 cut(s) 832
RsaI GTAC 1 cut(s) 542
RsaNI GTAC 1 cut(s) 541
SapI GCTCTTC 1 cut(s) 324
SaqAI TTAA 2 cut(s) 596, 848
SatI GCNGC 3 cut(s) 144, 147, 207
Sau3AI GATC 1 cut(s) 973
Sau96I GGNCC 3 cut(s) 235, 278, 686
SchI GAGTC 1 cut(s) 120
ScrFI CCNGG 3 cut(s) 239, 276, 959
SduI GDGCHC 1 cut(s) 188
SexAI ACCWGGT 1 cut(s) 237
SfaNI GCATC 1 cut(s) 475
SfcI CTRYAG 2 cut(s) 99, 828
SinI GGWCC 2 cut(s) 235, 278
SpeI ACTAGT 1 cut(s) 499
SseBI AGGCCT 1 cut(s) 230
SsiI CCGC 3 cut(s) 53, 143, 146
SspMI CTAG 3 cut(s) 120, 500, 807
StuI AGGCCT 1 cut(s) 230
StyD4I CCNGG 3 cut(s) 237, 274, 957
StyI CCWWGG 3 cut(s) 225, 231, 305
TaaI ACNGT 2 cut(s) 85, 370
TaqI TCGA 2 cut(s) 391, 624
TatI WGTACW 1 cut(s) 540
TauI GCSGC 2 cut(s) 146, 149
TfiI GAWTC 1 cut(s) 629
Tru1I TTAA 2 cut(s) 596, 848
Tru9I TTAA 2 cut(s) 596, 848
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 1 cut(s) 206
Tsp45I GTSAC 1 cut(s) 259
TspDTI ATGAA 2 cut(s) 576, 669
TspGWI ACGGA 1 cut(s) 536
VpaK11BI GGWCC 2 cut(s) 235, 278
XapI RAATTY 2 cut(s) 645, 657
XmnI GAANNNNTTC 1 cut(s) 453
XspI CTAG 3 cut(s) 120, 500, 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.