Rmu_sc0000101.1_g000002

RNA splicing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000101.1
OG0002800
Physical Location & Seq
Forward (+)
13740 .. 16196
2457 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000101.1_g000002.1.cds

Sequence Viewer

Length: 813 bp
atggcttctgctttggccacttcctttgcttccgaatttctccctcgcgccccacccaaaggtctccctttgctttgtcccacagtcgcacatgtgtctgtagctgtgagagtcggagatagcaggccgttatccgctgtggcggcggcgaagagtaattccaatcctcctccgacgacgagaagccctaacaaaaggagtaaagcagcagaagaagaagaagccgttgaagaagtggaagaggatctaccctggattcaagagaaggccttggacctggtggatttcaccggctctgtcacgcaggccattcctggacccagagttggcaccagctccctcccttggattttggctcttcctctcgcttatgccggtctcaattttgttatcgccgttgtcaagaccgtcaaaaagttctcttcccctcgacataaacgcaagaaactggtcaataaaaatgctatgctatgcaaatcaatagacgaaatgtttcagaatggcttcgaccaaatcacgcctgatgccctgaaacaactcgtgcaaaatacaggttttggcatggaggagattttgcgcaagtacatctgttatactttgaatgaaaagccattcaacccagacatggtttccaatttaattcagctcaagaaagcttctttgttcgatgattctcaggtggctgaaattctaaatgaaatttcaagaagaattgtgcgagacaaaggtgctactaataagcctcaagaactagatgatgcagttcttaggagattggttagttttgttttcttctctctttcactttgctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

270

Amino Acids

29.71

Weight (kDa)

8.82

Isoelectric Point (pI)

49.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 578
AccB1I GGYRCC 1 cut(s) 329
AccII CGCG 1 cut(s) 48
AciI CCGC 3 cut(s) 135, 143, 146
AclWI GGATC 1 cut(s) 252
AcoI YGGCCR 1 cut(s) 15
AcsI RAATTY 3 cut(s) 35, 687, 699
AfaI GTAC 1 cut(s) 584
AfiI CCNNNNNNNGG 4 cut(s) 59, 326, 345, 625
AflIII ACRYGT 1 cut(s) 91
AgsI TTSAA 5 cut(s) 230, 260, 601, 616, 705
AjnI CCWGG 3 cut(s) 251, 276, 313
AluBI AGCT 4 cut(s) 104, 336, 646, 656
AluI AGCT 4 cut(s) 104, 336, 646, 656
Alw26I GTCTC 3 cut(s) 68, 383, 714
AlwI GGATC 1 cut(s) 252
AoxI GGCC 4 cut(s) 15, 125, 267, 306
ApeKI GCWGC 1 cut(s) 206
ApoI RAATTY 3 cut(s) 35, 687, 699
Asp700I GAANNNNTTC 2 cut(s) 492, 503
AspLEI GCGC 2 cut(s) 50, 579
AspS9I GGNCC 2 cut(s) 274, 317
AsuHPI GGTGA 1 cut(s) 280
AvaII GGWCC 2 cut(s) 274, 317
BalI TGGCCA 1 cut(s) 17
BanI GGYRCC 1 cut(s) 329
BarI GAAGNNNNNNTAC 2 cut(s) 231, 263
BauI CACGAG 1 cut(s) 539
BbvI GCAGC 1 cut(s) 218
BceAI ACGGC 3 cut(s) 112, 209, 380
BciT130I CCWGG 3 cut(s) 253, 278, 315
BcoDI GTCTC 3 cut(s) 68, 383, 714
BfaI CTAG 1 cut(s) 752
BfmI CTRYAG 1 cut(s) 99
BisI GCNGC 3 cut(s) 144, 147, 207
BlsI GCNGC 3 cut(s) 145, 148, 208
Bme1390I CCNGG 3 cut(s) 253, 278, 315
Bme18I GGWCC 2 cut(s) 274, 317
BmgT120I GGNCC 2 cut(s) 274, 317
BmiI GGNNCC 2 cut(s) 319, 331
BmrFI CCNGG 3 cut(s) 253, 278, 315
BmsI GCATC 2 cut(s) 514, 748
BpuEI CTTGAG 2 cut(s) 632, 729
BsaI GGTCTC 2 cut(s) 68, 383
BsaJI CCNNGG 3 cut(s) 251, 270, 344
Bsc4I CCNNNNNNNGG 4 cut(s) 59, 326, 345, 625
Bse118I RCCGGY 2 cut(s) 290, 374
Bse1I ACTGG 1 cut(s) 453
BseBI CCWGG 3 cut(s) 253, 278, 315
BseDI CCNNGG 3 cut(s) 251, 270, 344
BseLI CCNNNNNNNGG 4 cut(s) 59, 326, 345, 625
BseMII CTCAG 1 cut(s) 689
BseNI ACTGG 1 cut(s) 453
BseRI GAGGAG 2 cut(s) 159, 581
BseXI GCAGC 1 cut(s) 218
Bsh1236I CGCG 1 cut(s) 48
BshFI GGCC 4 cut(s) 17, 127, 269, 308
BshNI GGYRCC 1 cut(s) 329
BsiSI CCGG 2 cut(s) 291, 375
BslFI GGGAC 1 cut(s) 63
BslI CCNNNNNNNGG 4 cut(s) 59, 326, 345, 625
BsmAI GTCTC 3 cut(s) 68, 383, 714
BsmFI GGGAC 1 cut(s) 63
BsnI GGCC 4 cut(s) 17, 127, 269, 308
Bso31I GGTCTC 2 cut(s) 68, 383
Bsp143I GATC 1 cut(s) 244
BspACI CCGC 3 cut(s) 135, 143, 146
BspANI GGCC 4 cut(s) 17, 127, 269, 308
BspCNI CTCAG 1 cut(s) 688
BspFNI CGCG 1 cut(s) 48
BspLI GGNNCC 2 cut(s) 319, 331
BspPI GGATC 1 cut(s) 252
BspQI GCTCTTC 1 cut(s) 363
BspT107I GGYRCC 1 cut(s) 329
BspTNI GGTCTC 2 cut(s) 68, 383
BsrFI RCCGGY 2 cut(s) 290, 374
BsrI ACTGG 1 cut(s) 453
BssAI RCCGGY 2 cut(s) 290, 374
BssECI CCNNGG 3 cut(s) 251, 270, 344
BssMI GATC 1 cut(s) 244
BssSI CACGAG 1 cut(s) 539
BssT1I CCWWGG 2 cut(s) 270, 344
Bst2BI CACGAG 1 cut(s) 539
Bst2UI CCWGG 3 cut(s) 253, 278, 315
Bst4CI ACNGT 2 cut(s) 85, 409
Bst6I CTCTTC 4 cut(s) 146, 234, 363, 427
BstC8I GCNNGC 2 cut(s) 125, 306
BstDEI CTNAG 2 cut(s) 675, 767
BstFNI CGCG 1 cut(s) 48
BstHHI GCGC 2 cut(s) 50, 579
BstKTI GATC 1 cut(s) 247
BstMAI GTCTC 3 cut(s) 68, 383, 714
BstMBI GATC 1 cut(s) 244
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstNI CCWGG 3 cut(s) 253, 278, 315
BstNSI RCATGY 1 cut(s) 95
BstSCI CCNGG 3 cut(s) 251, 276, 313
BstSFI CTRYAG 1 cut(s) 99
BstUI CGCG 1 cut(s) 48
BstV1I GCAGC 1 cut(s) 218
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
BsuRI GGCC 4 cut(s) 17, 127, 269, 308
Cac8I GCNNGC 2 cut(s) 125, 306
CfoI GCGC 2 cut(s) 50, 579
Cfr10I RCCGGY 2 cut(s) 290, 374
Cfr13I GGNCC 2 cut(s) 274, 317
CsiI ACCWGGT 1 cut(s) 276
Csp6I GTAC 1 cut(s) 583
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CviAII CATG 3 cut(s) 92, 562, 625
CviQI GTAC 1 cut(s) 583
DdeI CTNAG 2 cut(s) 675, 767
DpnI GATC 1 cut(s) 246
DpnII GATC 1 cut(s) 244
EaeI YGGCCR 1 cut(s) 15
Eam1104I CTCTTC 4 cut(s) 146, 234, 363, 427
EarI CTCTTC 4 cut(s) 146, 234, 363, 427
Eco130I CCWWGG 2 cut(s) 270, 344
Eco147I AGGCCT 1 cut(s) 269
Eco31I GGTCTC 2 cut(s) 68, 383
Eco47I GGWCC 2 cut(s) 274, 317
EcoRII CCWGG 3 cut(s) 251, 276, 313
EcoT14I CCWWGG 2 cut(s) 270, 344
ErhI CCWWGG 2 cut(s) 270, 344
FaeI CATG 3 cut(s) 95, 565, 628
FaiI YATR 8 cut(s) 93, 372, 435, 467, 472, 563, 594, 626
FaqI GGGAC 1 cut(s) 63
FatI CATG 3 cut(s) 91, 561, 624
Fnu4HI GCNGC 3 cut(s) 144, 147, 207
Fsp4HI GCNGC 3 cut(s) 144, 147, 207
FspBI CTAG 1 cut(s) 752
FspI TGCGCA 1 cut(s) 578
GlaI GCGC 2 cut(s) 49, 578
GluI GCNGC 3 cut(s) 144, 147, 207
HaeIII GGCC 4 cut(s) 17, 127, 269, 308
HapII CCGG 2 cut(s) 291, 375
HhaI GCGC 2 cut(s) 50, 579
Hin1II CATG 3 cut(s) 95, 565, 628
Hin6I GCGC 2 cut(s) 48, 577
HinP1I GCGC 2 cut(s) 48, 577
HindIII AAGCTT 1 cut(s) 654
HinfI GANTC 3 cut(s) 111, 256, 671
HpaII CCGG 2 cut(s) 291, 375
HphI GGTGA 1 cut(s) 280
Hpy188I TCNGA 4 cut(s) 34, 116, 174, 498
Hpy188III TCNNGA 5 cut(s) 260, 403, 649, 705, 746
Hpy99I CGWCG 2 cut(s) 178, 181
HpyAV CCTTC 1 cut(s) 259
HpyCH4III ACNGT 2 cut(s) 85, 409
HpyCH4V TGCA 3 cut(s) 474, 544, 761
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
HpyF3I CTNAG 2 cut(s) 675, 767
Hsp92II CATG 3 cut(s) 95, 565, 628
HspAI GCGC 2 cut(s) 48, 577
Kzo9I GATC 1 cut(s) 244
LguI GCTCTTC 1 cut(s) 363
LmnI GCTCC 1 cut(s) 341
Lsp1109I GCAGC 1 cut(s) 218
LweI GCATC 2 cut(s) 514, 748
MabI ACCWGGT 1 cut(s) 276
MaeI CTAG 1 cut(s) 752
MaeIII GTNAC 1 cut(s) 298
MalI GATC 1 cut(s) 246
MboI GATC 1 cut(s) 244
MflI RGATCY 1 cut(s) 244
MlsI TGGCCA 1 cut(s) 17
MluCI AATT 8 cut(s) 35, 157, 382, 634, 639, 687, 699, 711
MluNI TGGCCA 1 cut(s) 17
MlyI GAGTC 1 cut(s) 120
MmeI TCCRAC 2 cut(s) 94, 197
MnlI CCTC 9 cut(s) 54, 177, 180, 235, 350, 372, 438, 559, 753
Mox20I TGGCCA 1 cut(s) 17
MroXI GAANNNNTTC 2 cut(s) 492, 503
MscI TGGCCA 1 cut(s) 17
MseI TTAA 1 cut(s) 638
Msp20I TGGCCA 1 cut(s) 17
MspA1I CMGCKG 1 cut(s) 137
MspI CCGG 2 cut(s) 291, 375
MspR9I CCNGG 3 cut(s) 253, 278, 315
MvaI CCWGG 3 cut(s) 253, 278, 315
MvnI CGCG 1 cut(s) 48
MwoI GCNNNNNNNGC 1 cut(s) 143
NdeII GATC 1 cut(s) 244
NlaIII CATG 3 cut(s) 95, 565, 628
NlaIV GGNNCC 2 cut(s) 319, 331
NmuCI GTSAC 1 cut(s) 298
NsbI TGCGCA 1 cut(s) 578
NspI RCATGY 1 cut(s) 95
PceI AGGCCT 1 cut(s) 269
PciI ACATGT 1 cut(s) 91
PciSI GCTCTTC 1 cut(s) 363
PdmI GAANNNNTTC 2 cut(s) 492, 503
PfeI GAWTC 2 cut(s) 256, 671
PfoI TCCNGGA 1 cut(s) 313
PkrI GCNGC 3 cut(s) 145, 148, 208
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
PscI ACATGT 1 cut(s) 91
Psp6I CCWGG 3 cut(s) 251, 276, 313
PspGI CCWGG 3 cut(s) 251, 276, 313
PspN4I GGNNCC 2 cut(s) 319, 331
PspPI GGNCC 2 cut(s) 274, 317
PsuI RGATCY 1 cut(s) 244
RsaI GTAC 1 cut(s) 584
RsaNI GTAC 1 cut(s) 583
SapI GCTCTTC 1 cut(s) 363
SaqAI TTAA 1 cut(s) 638
SatI GCNGC 3 cut(s) 144, 147, 207
Sau3AI GATC 1 cut(s) 244
Sau96I GGNCC 2 cut(s) 274, 317
SchI GAGTC 1 cut(s) 120
ScrFI CCNGG 3 cut(s) 253, 278, 315
SetI ASST 9 cut(s) 64, 106, 279, 338, 556, 648, 658, 681, 730
SexAI ACCWGGT 1 cut(s) 276
SfaNI GCATC 2 cut(s) 514, 748
SfcI CTRYAG 1 cut(s) 99
SinI GGWCC 2 cut(s) 274, 317
SmlI CTYRAG 2 cut(s) 647, 744
SmoI CTYRAG 2 cut(s) 647, 744
Sse9I AATT 8 cut(s) 35, 157, 382, 634, 639, 687, 699, 711
SseBI AGGCCT 1 cut(s) 269
SsiI CCGC 3 cut(s) 135, 143, 146
SspMI CTAG 1 cut(s) 752
StuI AGGCCT 1 cut(s) 269
StyD4I CCNGG 3 cut(s) 251, 276, 313
StyI CCWWGG 2 cut(s) 270, 344
TaaI ACNGT 2 cut(s) 85, 409
TaqI TCGA 3 cut(s) 430, 507, 666
TasI AATT 8 cut(s) 35, 157, 382, 634, 639, 687, 699, 711
TatI WGTACW 1 cut(s) 582
TauI GCSGC 2 cut(s) 146, 149
TfiI GAWTC 2 cut(s) 256, 671
Tru1I TTAA 1 cut(s) 638
Tru9I TTAA 1 cut(s) 638
TseFI GTSAC 1 cut(s) 298
TseI GCWGC 1 cut(s) 206
Tsp45I GTSAC 1 cut(s) 298
TspDTI ATGAA 2 cut(s) 618, 711
VpaK11BI GGWCC 2 cut(s) 274, 317
XapI RAATTY 3 cut(s) 35, 687, 699
XceI RCATGY 1 cut(s) 95
XmnI GAANNNNTTC 2 cut(s) 492, 503
XspI CTAG 1 cut(s) 752
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.