Rh6BG118500

RNA splicing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0002800
Physical Location & Seq
Forward (+)
18296859 .. 18298750
1892 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG118500.1

Sequence Viewer

Length: 579 bp
ATGTTTCAGAATGGCTCCGACCAAATCACTCCTGATGCCCTGAAACAACTCGTGCAAAATACAGGTTTTGGCATGGAGGAGGTTTTGCGCAAGTACATCCATTATACTTTGAATGAAAAGCCATTCAACCCAGACATGGTTTCCAATTTAATTCAGCTCAGAAAAGCTTCTTTGTTCGATGATTCTCAGGTGGCTGAAATTCTAAATGAAATTTCAAGAAGAATTGTGCGAGACAAAGGCCGAGTTGTAATGGATATGGCAGGTTATACTGAACGGGGTTTCAAAAGAAAATTAGCCATTCAAGCCCTATATGGAAAGGTGTTCTATCTGTCAGAGGTTATGGCATTGATGATAACTGTGACATATCTATTATTGATGGCCATTGTTAATTACCTGCTTGGTTGTCTAGGCCTCACCTTGGACTTATTTGATATGCATATAAACAAGGCTCTCTACACATTCAGTGGAACATGTGTGTGGCAGCTTGTGGGAGATTTGGCTTTCTGTTTTTTTTTTTATGTGGGTTCTGTGTGGTTTTCCATTTCGACTGTGTTTTGTGGAATTAGATATGAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

22.04

Weight (kDa)

7.62

Isoelectric Point (pI)

32.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARMH5 PF22915 21 - 112 4.4e-39 Armadillo-like helical domain-containing protein 5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 89
Acc36I ACCTGC 2 cut(s) 251, 402
AcoI YGGCCR 1 cut(s) 378
AcsI RAATTY 2 cut(s) 198, 210
AfaI GTAC 1 cut(s) 95
AfiI CCNNNNNNNGG 2 cut(s) 136, 418
AflIII ACRYGT 1 cut(s) 470
AgsI TTSAA 5 cut(s) 112, 127, 216, 283, 302
AluBI AGCT 3 cut(s) 157, 167, 484
AluI AGCT 3 cut(s) 157, 167, 484
Alw26I GTCTC 1 cut(s) 225
AoxI GGCC 3 cut(s) 238, 378, 409
ApeKI GCWGC 1 cut(s) 481
ApoI RAATTY 2 cut(s) 198, 210
Asp700I GAANNNNTTC 1 cut(s) 166
AspLEI GCGC 1 cut(s) 90
AsuHPI GGTGA 1 cut(s) 406
BalI TGGCCA 1 cut(s) 380
BauI CACGAG 1 cut(s) 50
BbvI GCAGC 1 cut(s) 493
BccI CCATC 1 cut(s) 370
BcoDI GTCTC 1 cut(s) 225
BfaI CTAG 1 cut(s) 407
BfuAI ACCTGC 2 cut(s) 251, 402
BisI GCNGC 1 cut(s) 482
BlsI GCNGC 1 cut(s) 483
BmiI GGNNCC 1 cut(s) 16
BmsI GCATC 1 cut(s) 25
BsaJI CCNNGG 1 cut(s) 417
Bsc4I CCNNNNNNNGG 2 cut(s) 136, 418
BseDI CCNNGG 1 cut(s) 417
BseGI GGATG 1 cut(s) 96
BseLI CCNNNNNNNGG 2 cut(s) 136, 418
BseMII CTCAG 2 cut(s) 172, 200
BseRI GAGGAG 1 cut(s) 92
BseXI GCAGC 1 cut(s) 493
BshFI GGCC 3 cut(s) 240, 380, 411
BslI CCNNNNNNNGG 2 cut(s) 136, 418
BsmAI GTCTC 1 cut(s) 225
BsnI GGCC 3 cut(s) 240, 380, 411
BspANI GGCC 3 cut(s) 240, 380, 411
BspCNI CTCAG 2 cut(s) 171, 199
BspLI GGNNCC 1 cut(s) 16
BspMI ACCTGC 2 cut(s) 251, 402
BssECI CCNNGG 1 cut(s) 417
BssSI CACGAG 1 cut(s) 50
BssT1I CCWWGG 1 cut(s) 417
Bst2BI CACGAG 1 cut(s) 50
Bst4CI ACNGT 2 cut(s) 358, 550
BstDEI CTNAG 2 cut(s) 158, 186
BstF5I GGATG 1 cut(s) 96
BstHHI GCGC 1 cut(s) 90
BstMAI GTCTC 1 cut(s) 225
BstMWI GCNNNNNNNGC 1 cut(s) 302
BstNSI RCATGY 1 cut(s) 474
BstV1I GCAGC 1 cut(s) 493
BsuRI GGCC 3 cut(s) 240, 380, 411
BtsCI GGATG 1 cut(s) 96
BtsIMutI CAGTG 1 cut(s) 469
BveI ACCTGC 2 cut(s) 251, 402
CfoI GCGC 1 cut(s) 90
Csp6I GTAC 1 cut(s) 94
CviAII CATG 3 cut(s) 73, 136, 471
CviQI GTAC 1 cut(s) 94
DdeI CTNAG 2 cut(s) 158, 186
EaeI YGGCCR 1 cut(s) 378
Eco130I CCWWGG 1 cut(s) 417
Eco147I AGGCCT 1 cut(s) 411
EcoT14I CCWWGG 1 cut(s) 417
EcoT22I ATGCAT 1 cut(s) 438
ErhI CCWWGG 1 cut(s) 417
FaeI CATG 3 cut(s) 76, 139, 474
FatI CATG 3 cut(s) 72, 135, 470
Fnu4HI GCNGC 1 cut(s) 482
FokI GGATG 1 cut(s) 83
Fsp4HI GCNGC 1 cut(s) 482
FspBI CTAG 1 cut(s) 407
FspI TGCGCA 1 cut(s) 89
GlaI GCGC 1 cut(s) 89
GluI GCNGC 1 cut(s) 482
HaeIII GGCC 3 cut(s) 240, 380, 411
HhaI GCGC 1 cut(s) 90
Hin1II CATG 3 cut(s) 76, 139, 474
Hin6I GCGC 1 cut(s) 88
HinP1I GCGC 1 cut(s) 88
HindIII AAGCTT 1 cut(s) 165
HinfI GANTC 1 cut(s) 182
HphI GGTGA 1 cut(s) 406
Hpy188I TCNGA 4 cut(s) 9, 19, 161, 334
Hpy188III TCNNGA 2 cut(s) 32, 216
HpyCH4III ACNGT 2 cut(s) 358, 550
HpyCH4V TGCA 2 cut(s) 55, 436
HpyF10VI GCNNNNNNNGC 1 cut(s) 302
HpyF3I CTNAG 2 cut(s) 158, 186
Hsp92II CATG 3 cut(s) 76, 139, 474
HspAI GCGC 1 cut(s) 88
LmnI GCTCC 1 cut(s) 20
LpnPI CCDG 7 cut(s) 45, 48, 53, 144, 173, 246, 407
Lsp1109I GCAGC 1 cut(s) 493
LweI GCATC 1 cut(s) 25
MaeI CTAG 1 cut(s) 407
MaeIII GTNAC 1 cut(s) 358
MboII GAAGA 1 cut(s) 231
MlsI TGGCCA 1 cut(s) 380
MluCI AATT 8 cut(s) 145, 150, 198, 210, 222, 290, 388, 561
MluNI TGGCCA 1 cut(s) 380
MmeI TCCRAC 1 cut(s) 42
MnlI CCTC 4 cut(s) 70, 73, 328, 422
Mox20I TGGCCA 1 cut(s) 380
Mph1103I ATGCAT 1 cut(s) 438
MroXI GAANNNNTTC 1 cut(s) 166
MscI TGGCCA 1 cut(s) 380
MseI TTAA 2 cut(s) 149, 387
MslI CAYNNNNRTG 1 cut(s) 475
Msp20I TGGCCA 1 cut(s) 380
MwoI GCNNNNNNNGC 1 cut(s) 302
NlaIII CATG 3 cut(s) 76, 139, 474
NlaIV GGNNCC 1 cut(s) 16
NmeAIII GCCGAG 1 cut(s) 266
NmuCI GTSAC 1 cut(s) 358
NsbI TGCGCA 1 cut(s) 89
NsiI ATGCAT 1 cut(s) 438
NspI RCATGY 1 cut(s) 474
PceI AGGCCT 1 cut(s) 411
PciI ACATGT 1 cut(s) 470
PdmI GAANNNNTTC 1 cut(s) 166
PfeI GAWTC 1 cut(s) 182
PkrI GCNGC 1 cut(s) 483
PscI ACATGT 1 cut(s) 470
PspN4I GGNNCC 1 cut(s) 16
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
RseI CAYNNNNRTG 1 cut(s) 475
SaqAI TTAA 2 cut(s) 149, 387
SatI GCNGC 1 cut(s) 482
SfaNI GCATC 1 cut(s) 25
SmiMI CAYNNNNRTG 1 cut(s) 475
Sse9I AATT 8 cut(s) 145, 150, 198, 210, 222, 290, 388, 561
SseBI AGGCCT 1 cut(s) 411
SspMI CTAG 1 cut(s) 407
StuI AGGCCT 1 cut(s) 411
StyI CCWWGG 1 cut(s) 417
TaaI ACNGT 2 cut(s) 358, 550
TaqI TCGA 2 cut(s) 177, 545
TasI AATT 8 cut(s) 145, 150, 198, 210, 222, 290, 388, 561
TatI WGTACW 1 cut(s) 93
TfiI GAWTC 1 cut(s) 182
Tru1I TTAA 2 cut(s) 149, 387
Tru9I TTAA 2 cut(s) 149, 387
TscAI CASTG 1 cut(s) 469
TseFI GTSAC 1 cut(s) 358
TseI GCWGC 1 cut(s) 481
Tsp45I GTSAC 1 cut(s) 358
TspDTI ATGAA 2 cut(s) 129, 222
TspRI CASTG 1 cut(s) 469
XapI RAATTY 2 cut(s) 198, 210
XceI RCATGY 1 cut(s) 474
XmnI GAANNNNTTC 1 cut(s) 166
XspI CTAG 1 cut(s) 407
Zsp2I ATGCAT 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.