Rh6AG123500

RNA splicing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0002800
Physical Location & Seq
Forward (+)
18403111 .. 18407446
4336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG123500.1

Sequence Viewer

Length: 456 bp
ATGTTTCAGAATGGCTCTGACCAAATCAAGCCTGATGCCCTGAAACAACTCGTGCAAAATACAGGTTTTGGCATGGAGGAGATATTGCCCAAGTACATCCATTATACTTTGAATGAAAAGCCATTCAACCCAGACATGGTTTCCAATTTAATTCAGCTCAGAAAAGCTTCTTTGTTCGATGATTCTCAGGTGGCTGAAATTCTAAATGAAATTTCAAGAAGAATTGTGCGAGACAAAGGCCTAGTTGTAATGGATATGGCAGGTTATACTGAACGGGGTTTCAAAAGAAAATTAGCCATTCAAGCCCTATATGGAAAGGTGTTCTACCTGTCAGAGGTAAGGGACCAAACAACCAAAATGACTTTGACCAACTGCCTGTATGGTTTATTTTTATGTTTTATTTTTCTTTTGTTGTTAGAAACTACCTTGATTCACATCATAAGAAAATATGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

17.54

Weight (kDa)

8.5

Isoelectric Point (pI)

37.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARMH5 PF22915 21 - 112 1.2e-37 Armadillo-like helical domain-containing protein 5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 251
AcsI RAATTY 2 cut(s) 198, 210
AfaI GTAC 1 cut(s) 95
AfiI CCNNNNNNNGG 2 cut(s) 136, 334
AgsI TTSAA 5 cut(s) 112, 127, 216, 283, 302
AluBI AGCT 2 cut(s) 157, 167
AluI AGCT 2 cut(s) 157, 167
Alw26I GTCTC 1 cut(s) 225
AoxI GGCC 1 cut(s) 238
ApoI RAATTY 2 cut(s) 198, 210
Asp700I GAANNNNTTC 1 cut(s) 166
AspS9I GGNCC 1 cut(s) 343
AvaII GGWCC 1 cut(s) 343
BauI CACGAG 1 cut(s) 50
BcoDI GTCTC 1 cut(s) 225
BfaI CTAG 2 cut(s) 242, 454
BfuAI ACCTGC 1 cut(s) 251
Bme18I GGWCC 1 cut(s) 343
BmgT120I GGNCC 1 cut(s) 343
BmiI GGNNCC 1 cut(s) 344
BmsI GCATC 1 cut(s) 25
BsaBI GATNNNNATC 1 cut(s) 434
Bsc4I CCNNNNNNNGG 2 cut(s) 136, 334
Bse8I GATNNNNATC 1 cut(s) 434
BseGI GGATG 1 cut(s) 96
BseJI GATNNNNATC 1 cut(s) 434
BseLI CCNNNNNNNGG 2 cut(s) 136, 334
BseMII CTCAG 2 cut(s) 172, 200
BseRI GAGGAG 1 cut(s) 92
BshFI GGCC 1 cut(s) 240
BslFI GGGAC 1 cut(s) 356
BslI CCNNNNNNNGG 2 cut(s) 136, 334
BsmAI GTCTC 1 cut(s) 225
BsmFI GGGAC 1 cut(s) 356
BsnI GGCC 1 cut(s) 240
BspANI GGCC 1 cut(s) 240
BspCNI CTCAG 2 cut(s) 171, 199
BspLI GGNNCC 1 cut(s) 344
BspMI ACCTGC 1 cut(s) 251
BssSI CACGAG 1 cut(s) 50
Bst2BI CACGAG 1 cut(s) 50
BstDEI CTNAG 2 cut(s) 158, 186
BstENI CCTNNNNNAGG 1 cut(s) 332
BstF5I GGATG 1 cut(s) 96
BstMAI GTCTC 1 cut(s) 225
BstMWI GCNNNNNNNGC 1 cut(s) 302
BsuRI GGCC 1 cut(s) 240
BtsCI GGATG 1 cut(s) 96
BveI ACCTGC 1 cut(s) 251
Cfr13I GGNCC 1 cut(s) 343
Csp6I GTAC 1 cut(s) 94
CviAII CATG 2 cut(s) 73, 136
CviJI RGCY 9 cut(s) 15, 31, 121, 157, 167, 194, 240, 296, 305
CviKI_1 RGCY 9 cut(s) 15, 31, 121, 157, 167, 194, 240, 296, 305
CviQI GTAC 1 cut(s) 94
DdeI CTNAG 2 cut(s) 158, 186
Eco147I AGGCCT 1 cut(s) 240
Eco47I GGWCC 1 cut(s) 343
EcoNI CCTNNNNNAGG 1 cut(s) 332
FaeI CATG 2 cut(s) 76, 139
FaqI GGGAC 1 cut(s) 356
FatI CATG 2 cut(s) 72, 135
FokI GGATG 1 cut(s) 83
FspBI CTAG 2 cut(s) 242, 454
HaeIII GGCC 1 cut(s) 240
Hin1II CATG 2 cut(s) 76, 139
HindIII AAGCTT 1 cut(s) 165
HinfI GANTC 2 cut(s) 182, 430
Hpy188I TCNGA 4 cut(s) 9, 19, 161, 334
Hpy188III TCNNGA 1 cut(s) 216
HpyCH4V TGCA 1 cut(s) 55
HpyF10VI GCNNNNNNNGC 1 cut(s) 302
HpyF3I CTNAG 2 cut(s) 158, 186
Hsp92II CATG 2 cut(s) 76, 139
LpnPI CCDG 8 cut(s) 45, 48, 53, 144, 173, 246, 341, 389
LweI GCATC 1 cut(s) 25
MaeI CTAG 2 cut(s) 242, 454
MboII GAAGA 1 cut(s) 231
MluCI AATT 6 cut(s) 145, 150, 198, 210, 222, 290
MnlI CCTC 2 cut(s) 70, 328
MroXI GAANNNNTTC 1 cut(s) 166
MseI TTAA 1 cut(s) 149
MwoI GCNNNNNNNGC 1 cut(s) 302
NlaIII CATG 2 cut(s) 76, 139
NlaIV GGNNCC 1 cut(s) 344
PceI AGGCCT 1 cut(s) 240
PdmI GAANNNNTTC 1 cut(s) 166
PfeI GAWTC 2 cut(s) 182, 430
PspN4I GGNNCC 1 cut(s) 344
PspPI GGNCC 1 cut(s) 343
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
SaqAI TTAA 1 cut(s) 149
Sau96I GGNCC 1 cut(s) 343
SetI ASST 9 cut(s) 67, 159, 169, 192, 265, 321, 330, 339, 428
SfaNI GCATC 1 cut(s) 25
SinI GGWCC 1 cut(s) 343
Sse9I AATT 6 cut(s) 145, 150, 198, 210, 222, 290
SseBI AGGCCT 1 cut(s) 240
SspMI CTAG 2 cut(s) 242, 454
StuI AGGCCT 1 cut(s) 240
TaqI TCGA 1 cut(s) 177
TasI AATT 6 cut(s) 145, 150, 198, 210, 222, 290
TatI WGTACW 1 cut(s) 93
TfiI GAWTC 2 cut(s) 182, 430
Tru1I TTAA 1 cut(s) 149
Tru9I TTAA 1 cut(s) 149
TspDTI ATGAA 2 cut(s) 129, 222
VpaK11BI GGWCC 1 cut(s) 343
XagI CCTNNNNNAGG 1 cut(s) 332
XapI RAATTY 2 cut(s) 198, 210
XmnI GAANNNNTTC 1 cut(s) 166
XspI CTAG 2 cut(s) 242, 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.