Rh6CG116600

RNA splicing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0002800
Physical Location & Seq
Forward (+)
13432764 .. 13435210
2447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG116600.1

Sequence Viewer

Length: 675 bp
ATGTTTCAGAATGGCTCCGACCAAATCACTCCTGATGCCCTGAAACAACTCGTGCAAAATACAGGTTTTGGCATGGAGGAGGTTTTGCGCAAGTACATCCATTATACTTTGAATGAAAAGCCATTCAACCCAGACATGGTTTCCAATTTAATTCAGCTCAGAAAAGCTTCTTTGTTCGATGATTCTCAGGTGGCTGAAATTCTAAATGAAATTTCAAGAAGAATTGTGCGAGACAAAGGCCGAGTTGTAATGGATATGGCAGGTTATACTGAACGGGGTTTCAAAAGAAAATTAGCCATTCAAGCCCTATATGGAAAGGTGTTCTATCTGTCAGAGGTTATGGCATTGATGATAACTATTTCTGCACTAGACTATGTCATCCACGTCTGTCGTAGTCTAGGCCTCACCTTGGACTTATTTGATATGCATATAAACAAGGCTCTCTACACATTCAGTGGAACATGTGTGTGGCAGCTTGTGGGAGATTTGGCTTTCTGTTTTTTTTTTTATATTTCACTTGCTGCTGCTGTAAGGTCTGTGTCTTCTCTTTTGGTCTGTATAATTGGTCTGCTACTTTTGCTTCCATTTTCTCAATGTGCAATAAATTGGGCCTTCTTTGTGTGTGTGTATATATATATATATATATATTTTTTTTGGGTGGTGATTAAGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

224

Amino Acids

25.72

Weight (kDa)

8.17

Isoelectric Point (pI)

34.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARMH5 PF22915 21 - 112 6.4e-39 Armadillo-like helical domain-containing protein 5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 89
Acc36I ACCTGC 1 cut(s) 251
AcsI RAATTY 2 cut(s) 198, 210
AfaI GTAC 1 cut(s) 95
AfiI CCNNNNNNNGG 2 cut(s) 136, 409
AflIII ACRYGT 1 cut(s) 461
AgsI TTSAA 5 cut(s) 112, 127, 216, 283, 302
AjiI CACGTC 1 cut(s) 385
AluBI AGCT 3 cut(s) 157, 167, 475
AluI AGCT 3 cut(s) 157, 167, 475
Alw26I GTCTC 1 cut(s) 225
AoxI GGCC 3 cut(s) 238, 400, 609
ApeKI GCWGC 3 cut(s) 472, 521, 524
ApoI RAATTY 2 cut(s) 198, 210
Asp700I GAANNNNTTC 1 cut(s) 166
AspLEI GCGC 1 cut(s) 90
AspS9I GGNCC 1 cut(s) 609
AsuHPI GGTGA 2 cut(s) 397, 673
BauI CACGAG 1 cut(s) 50
BbsI GAAGAC 1 cut(s) 534
BbvI GCAGC 3 cut(s) 484, 508, 511
BcoDI GTCTC 1 cut(s) 225
BfaI CTAG 2 cut(s) 368, 398
BfuAI ACCTGC 1 cut(s) 251
BglII AGATCT 1 cut(s) 669
BisI GCNGC 3 cut(s) 473, 522, 525
BlsI GCNGC 3 cut(s) 474, 523, 526
BmgBI CACGTC 1 cut(s) 385
BmgT120I GGNCC 1 cut(s) 609
BmiI GGNNCC 1 cut(s) 16
BmsI GCATC 1 cut(s) 25
BpiI GAAGAC 1 cut(s) 534
BsaBI GATNNNNATC 1 cut(s) 668
BsaJI CCNNGG 1 cut(s) 408
Bsc4I CCNNNNNNNGG 2 cut(s) 136, 409
Bse8I GATNNNNATC 1 cut(s) 668
BseDI CCNNGG 1 cut(s) 408
BseGI GGATG 2 cut(s) 96, 378
BseJI GATNNNNATC 1 cut(s) 668
BseLI CCNNNNNNNGG 2 cut(s) 136, 409
BseMII CTCAG 2 cut(s) 172, 200
BseRI GAGGAG 1 cut(s) 92
BseXI GCAGC 3 cut(s) 484, 508, 511
BsgI GTGCAG 1 cut(s) 348
BshFI GGCC 3 cut(s) 240, 402, 611
BslI CCNNNNNNNGG 2 cut(s) 136, 409
BsmAI GTCTC 1 cut(s) 225
BsnI GGCC 3 cut(s) 240, 402, 611
Bsp143I GATC 1 cut(s) 669
BspANI GGCC 3 cut(s) 240, 402, 611
BspCNI CTCAG 2 cut(s) 171, 199
BspLI GGNNCC 1 cut(s) 16
BspMI ACCTGC 1 cut(s) 251
BssECI CCNNGG 1 cut(s) 408
BssMI GATC 1 cut(s) 669
BssSI CACGAG 1 cut(s) 50
BssT1I CCWWGG 1 cut(s) 408
Bst2BI CACGAG 1 cut(s) 50
BstDEI CTNAG 2 cut(s) 158, 186
BstF5I GGATG 2 cut(s) 96, 378
BstHHI GCGC 1 cut(s) 90
BstKTI GATC 1 cut(s) 672
BstMAI GTCTC 1 cut(s) 225
BstMBI GATC 1 cut(s) 669
BstMWI GCNNNNNNNGC 2 cut(s) 302, 577
BstNSI RCATGY 1 cut(s) 465
BstV1I GCAGC 3 cut(s) 484, 508, 511
BstV2I GAAGAC 1 cut(s) 534
BstX2I RGATCY 1 cut(s) 669
BstYI RGATCY 1 cut(s) 669
BsuRI GGCC 3 cut(s) 240, 402, 611
BtrI CACGTC 1 cut(s) 385
BtsCI GGATG 2 cut(s) 96, 378
BtsIMutI CAGTG 1 cut(s) 460
BveI ACCTGC 1 cut(s) 251
CfoI GCGC 1 cut(s) 90
Cfr13I GGNCC 1 cut(s) 609
Csp6I GTAC 1 cut(s) 94
CviAII CATG 3 cut(s) 73, 136, 462
CviQI GTAC 1 cut(s) 94
DdeI CTNAG 2 cut(s) 158, 186
DpnI GATC 1 cut(s) 671
DpnII GATC 1 cut(s) 669
Eco130I CCWWGG 1 cut(s) 408
Eco147I AGGCCT 1 cut(s) 402
EcoT14I CCWWGG 1 cut(s) 408
EcoT22I ATGCAT 1 cut(s) 429
ErhI CCWWGG 1 cut(s) 408
FaeI CATG 3 cut(s) 76, 139, 465
FatI CATG 3 cut(s) 72, 135, 461
Fnu4HI GCNGC 3 cut(s) 473, 522, 525
FokI GGATG 2 cut(s) 83, 365
Fsp4HI GCNGC 3 cut(s) 473, 522, 525
FspBI CTAG 2 cut(s) 368, 398
FspI TGCGCA 1 cut(s) 89
GlaI GCGC 1 cut(s) 89
GluI GCNGC 3 cut(s) 473, 522, 525
HaeIII GGCC 3 cut(s) 240, 402, 611
HhaI GCGC 1 cut(s) 90
Hin1II CATG 3 cut(s) 76, 139, 465
Hin6I GCGC 1 cut(s) 88
HinP1I GCGC 1 cut(s) 88
HindIII AAGCTT 1 cut(s) 165
HinfI GANTC 1 cut(s) 182
HphI GGTGA 2 cut(s) 397, 673
Hpy188I TCNGA 5 cut(s) 9, 19, 161, 334, 674
Hpy188III TCNNGA 2 cut(s) 32, 216
HpyAV CCTTC 1 cut(s) 622
HpyCH4IV ACGT 1 cut(s) 384
HpyCH4V TGCA 4 cut(s) 55, 365, 427, 599
HpyF10VI GCNNNNNNNGC 2 cut(s) 302, 577
HpyF3I CTNAG 2 cut(s) 158, 186
HpySE526I ACGT 1 cut(s) 384
Hsp92II CATG 3 cut(s) 76, 139, 465
HspAI GCGC 1 cut(s) 88
Kzo9I GATC 1 cut(s) 669
LmnI GCTCC 1 cut(s) 20
LpnPI CCDG 6 cut(s) 45, 48, 53, 144, 173, 246
Lsp1109I GCAGC 3 cut(s) 484, 508, 511
LweI GCATC 1 cut(s) 25
MaeI CTAG 2 cut(s) 368, 398
MaeII ACGT 1 cut(s) 384
MalI GATC 1 cut(s) 671
MboI GATC 1 cut(s) 669
MboII GAAGA 2 cut(s) 231, 534
MflI RGATCY 1 cut(s) 669
MluCI AATT 8 cut(s) 145, 150, 198, 210, 222, 290, 561, 604
MmeI TCCRAC 1 cut(s) 42
MnlI CCTC 4 cut(s) 70, 73, 328, 413
Mph1103I ATGCAT 1 cut(s) 429
MroXI GAANNNNTTC 1 cut(s) 166
MseI TTAA 2 cut(s) 149, 666
MslI CAYNNNNRTG 1 cut(s) 466
MwoI GCNNNNNNNGC 2 cut(s) 302, 577
NdeII GATC 1 cut(s) 669
NlaIII CATG 3 cut(s) 76, 139, 465
NlaIV GGNNCC 1 cut(s) 16
NmeAIII GCCGAG 1 cut(s) 266
NsbI TGCGCA 1 cut(s) 89
NsiI ATGCAT 1 cut(s) 429
NspI RCATGY 1 cut(s) 465
PceI AGGCCT 1 cut(s) 402
PciI ACATGT 1 cut(s) 461
PdmI GAANNNNTTC 1 cut(s) 166
PfeI GAWTC 1 cut(s) 182
PflFI GACNNNGTC 1 cut(s) 374
PkrI GCNGC 3 cut(s) 474, 523, 526
PscI ACATGT 1 cut(s) 461
PspN4I GGNNCC 1 cut(s) 16
PspPI GGNCC 1 cut(s) 609
PsuI RGATCY 1 cut(s) 669
PsyI GACNNNGTC 1 cut(s) 374
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
RseI CAYNNNNRTG 1 cut(s) 466
SaqAI TTAA 2 cut(s) 149, 666
SatI GCNGC 3 cut(s) 473, 522, 525
Sau3AI GATC 1 cut(s) 669
Sau96I GGNCC 1 cut(s) 609
SfaNI GCATC 1 cut(s) 25
SmiMI CAYNNNNRTG 1 cut(s) 466
Sse9I AATT 8 cut(s) 145, 150, 198, 210, 222, 290, 561, 604
SseBI AGGCCT 1 cut(s) 402
SspMI CTAG 2 cut(s) 368, 398
StuI AGGCCT 1 cut(s) 402
StyI CCWWGG 1 cut(s) 408
TaiI ACGT 1 cut(s) 387
TaqI TCGA 1 cut(s) 177
TasI AATT 8 cut(s) 145, 150, 198, 210, 222, 290, 561, 604
TatI WGTACW 1 cut(s) 93
TfiI GAWTC 1 cut(s) 182
Tru1I TTAA 2 cut(s) 149, 666
Tru9I TTAA 2 cut(s) 149, 666
TscAI CASTG 1 cut(s) 460
TseI GCWGC 3 cut(s) 472, 521, 524
TspDTI ATGAA 2 cut(s) 129, 222
TspRI CASTG 1 cut(s) 460
Tth111I GACNNNGTC 1 cut(s) 374
XapI RAATTY 2 cut(s) 198, 210
XceI RCATGY 1 cut(s) 465
XmnI GAANNNNTTC 1 cut(s) 166
XspI CTAG 2 cut(s) 368, 398
Zsp2I ATGCAT 1 cut(s) 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.