AT5G09270

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
2878826 .. 2880881
2056 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G09270.2

Sequence Viewer

Length: 336 bp
ATGGCGACAGAGCATAGCGGTTTAGAAGATCAGGAGAGCCAACCAAGCCAAGTGGCTCCTGGTTTTGTAGGAGCAATTGAAGAACAATACAAAAAACTCAGAGATCACGCTGAAGCTTATCCATATGTTTGGGGTTCTTATACTGTTGTCTATGGTGGTCTTTTCCTTTGGACAGCTTATAGATGGAGGAAACTTAGGAGAACTGAAGATCGAGTTCGTGGTCTTCAGACAAAACTTCGGAAACTCGTCGAAAATGAACAAGCAGCAGTAACAGCTTCTAAATCTGCTCAATCAGTGGACAAGTCTTCTTCAATTCCCGACAAGAAAACGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.59

Weight (kDa)

9.19

Isoelectric Point (pI)

52.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09270 AT5G09270
fragaria_vesca FvH4_6g45500
malus_domestica MD09G1082400.v1.1 MD10G1003300.v1.1
prunus_persica Prupe.3G241300_v2.0.a1
pyrus_communis pycom09g00890 pycom10g00270
rosa_chinensis RchiOBHm_Chr2g0163441
rosa_laevigata RLG00000021393
rosa_multiflora Rmu_sc0028601.1_g000002 Rmu_ssc0000231.1_g000002
rosa_roxburghii Rroxscaffold_2G00087330
rosa_rugosa Rorug02G0502700
rosa_samantha Rh2AG569700 Rh2CG551600
rosa_wichuraiana Rw2G047150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 18
AcuI CTGAAG 3 cut(s) 132, 209, 225
AgsI TTSAA 2 cut(s) 80, 312
AjnI CCWGG 1 cut(s) 58
AluBI AGCT 3 cut(s) 116, 176, 275
AluI AGCT 3 cut(s) 116, 176, 275
ApeKI GCWGC 1 cut(s) 263
BbsI GAAGAC 2 cut(s) 215, 297
BbvI GCAGC 1 cut(s) 275
BccI CCATC 1 cut(s) 177
BciT130I CCWGG 1 cut(s) 60
BisI GCNGC 1 cut(s) 264
BlsI GCNGC 1 cut(s) 265
Bme1390I CCNGG 1 cut(s) 60
BmiI GGNNCC 1 cut(s) 57
BmrFI CCNGG 1 cut(s) 60
BpiI GAAGAC 2 cut(s) 215, 297
BseBI CCWGG 1 cut(s) 60
BseMII CTCAG 1 cut(s) 112
BseXI GCAGC 1 cut(s) 275
Bsp143I GATC 3 cut(s) 28, 103, 208
BspACI CCGC 1 cut(s) 18
BspCNI CTCAG 1 cut(s) 111
BspLI GGNNCC 1 cut(s) 57
BssMI GATC 3 cut(s) 28, 103, 208
Bst2UI CCWGG 1 cut(s) 60
Bst4CI ACNGT 1 cut(s) 145
BstDEI CTNAG 2 cut(s) 98, 194
BstKTI GATC 3 cut(s) 31, 106, 211
BstMBI GATC 3 cut(s) 28, 103, 208
BstMWI GCNNNNNNNGC 2 cut(s) 45, 272
BstNI CCWGG 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 58
BstV1I GCAGC 1 cut(s) 275
BstV2I GAAGAC 2 cut(s) 215, 297
BstXI CCANNNNNNTGG 1 cut(s) 129
BtsIMutI CAGTG 1 cut(s) 300
CspCI CAANNNNNGTGG 2 cut(s) 33, 68
CviJI RGCY 6 cut(s) 39, 48, 56, 116, 176, 275
CviKI_1 RGCY 6 cut(s) 39, 48, 56, 116, 176, 275
DdeI CTNAG 2 cut(s) 98, 194
DpnI GATC 3 cut(s) 30, 105, 210
DpnII GATC 3 cut(s) 28, 103, 208
Eco57I CTGAAG 3 cut(s) 132, 209, 225
EcoRII CCWGG 1 cut(s) 58
FaiI YATR 6 cut(s) 15, 124, 126, 141, 153, 180
FauNDI CATATG 1 cut(s) 124
Fnu4HI GCNGC 1 cut(s) 264
Fsp4HI GCNGC 1 cut(s) 264
GluI GCNGC 1 cut(s) 264
HindIII AAGCTT 1 cut(s) 114
Hpy166II GTNNAC 1 cut(s) 298
Hpy188I TCNGA 3 cut(s) 101, 228, 240
Hpy188III TCNNGA 2 cut(s) 32, 317
Hpy8I GTNNAC 1 cut(s) 298
Hpy99I CGWCG 1 cut(s) 251
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4IV ACGT 1 cut(s) 329
HpyF10VI GCNNNNNNNGC 2 cut(s) 45, 272
HpyF3I CTNAG 2 cut(s) 98, 194
HpySE526I ACGT 1 cut(s) 329
Kzo9I GATC 3 cut(s) 28, 103, 208
LmnI GCTCC 2 cut(s) 61, 71
LpnPI CCDG 3 cut(s) 17, 45, 72
Lsp1109I GCAGC 1 cut(s) 275
MaeII ACGT 1 cut(s) 329
MaeIII GTNAC 1 cut(s) 268
MalI GATC 3 cut(s) 30, 105, 210
MboI GATC 3 cut(s) 28, 103, 208
MboII GAAGA 6 cut(s) 38, 92, 215, 218, 297, 300
MfeI CAATTG 1 cut(s) 75
MluCI AATT 2 cut(s) 75, 312
MnlI CCTC 1 cut(s) 180
MseI TTAA 1 cut(s) 334
MspR9I CCNGG 1 cut(s) 60
MunI CAATTG 1 cut(s) 75
MvaI CCWGG 1 cut(s) 60
MwoI GCNNNNNNNGC 2 cut(s) 45, 272
NdeI CATATG 1 cut(s) 124
NdeII GATC 3 cut(s) 28, 103, 208
NlaIV GGNNCC 1 cut(s) 57
PkrI GCNGC 1 cut(s) 265
Psp6I CCWGG 1 cut(s) 58
PspGI CCWGG 1 cut(s) 58
PspN4I GGNNCC 1 cut(s) 57
SaqAI TTAA 1 cut(s) 334
SatI GCNGC 1 cut(s) 264
Sau3AI GATC 3 cut(s) 28, 103, 208
ScrFI CCNGG 1 cut(s) 60
SetI ASST 4 cut(s) 118, 178, 277, 332
Sse9I AATT 2 cut(s) 75, 312
SsiI CCGC 1 cut(s) 18
StyD4I CCNGG 1 cut(s) 58
TaaI ACNGT 1 cut(s) 145
TaiI ACGT 1 cut(s) 332
TaqI TCGA 2 cut(s) 211, 249
TasI AATT 2 cut(s) 75, 312
Tru1I TTAA 1 cut(s) 334
Tru9I TTAA 1 cut(s) 334
TscAI CASTG 1 cut(s) 300
TseI GCWGC 1 cut(s) 263
TspDTI ATGAA 1 cut(s) 270
TspRI CASTG 1 cut(s) 300
XcmI CCANNNNNNNNNTGG 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.