Rh2AG569700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0014240
Physical Location & Seq
Forward (+)
80023493 .. 80025360
1868 bp
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UTR
Exon/CDS
Intron
Rh2AG569700.1

Sequence Viewer

Length: 456 bp
ATGAACAGAAGCCGTTGGATGAAAGAGAGGGCTGAGAACCTTACATTCTCCGTGTGCCCACCACAGAGGTTTCAATTGCAAAATTGTGTGAATGTTTTGAGAATGGCAACTCAGGAAACCGGAGAAGAAAATCAGCAAACTGCGAGTTCCCAAGCTGTTGGTTTCATCGGAGCGGTGGAAGCAAAGTATAGGCAAATCAAAGAACATGCAGAGACCTACCCTTATGTGTGGGCTTCCTACAGTGTTGTATATGGTGGTTTGGCCCTCTGGACTACCTACAGATGGAGAAAGCTTCGAAAGACTGAGGATCGAGTACGAGCCCTTCAGGAGAGATTACGCAAGCATTATGCAGCTGAAGAGCGTGCAAGTGCAACCGTAAGTTCAAGCACAAGTCGAAGCCCTGCCACCCCAGTTCAAAAGGTCCCTCCACCATCTGCTGACAAAACCCCTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

17.31

Weight (kDa)

9.9

Isoelectric Point (pI)

63.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09270 AT5G09270
fragaria_vesca FvH4_6g45500
malus_domestica MD09G1082400.v1.1 MD10G1003300.v1.1
prunus_persica Prupe.3G241300_v2.0.a1
pyrus_communis pycom09g00890 pycom10g00270
rosa_chinensis RchiOBHm_Chr2g0163441
rosa_laevigata RLG00000021393
rosa_multiflora Rmu_sc0028601.1_g000002 Rmu_ssc0000231.1_g000002
rosa_roxburghii Rroxscaffold_2G00087330
rosa_rugosa Rorug02G0502700
rosa_samantha Rh2AG569700 Rh2CG551600
rosa_wichuraiana Rw2G047150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 173
AciI CCGC 1 cut(s) 173
AclWI GGATC 1 cut(s) 315
AcuI CTGAAG 2 cut(s) 308, 375
AfaI GTAC 1 cut(s) 315
AfiI CCNNNNNNNGG 1 cut(s) 282
AgsI TTSAA 3 cut(s) 74, 384, 416
AluBI AGCT 3 cut(s) 155, 292, 353
AluI AGCT 3 cut(s) 155, 292, 353
Alw26I GTCTC 1 cut(s) 206
AlwI GGATC 1 cut(s) 315
AoxI GGCC 1 cut(s) 261
ApeKI GCWGC 1 cut(s) 350
AspS9I GGNCC 2 cut(s) 262, 421
AsuII TTCGAA 1 cut(s) 295
AvaII GGWCC 1 cut(s) 421
BaeGI GKGCMC 1 cut(s) 59
BanII GRGCYC 1 cut(s) 322
BarI GAAGNNNNNNTAC 2 cut(s) 306, 338
BbvI GCAGC 1 cut(s) 362
BccI CCATC 2 cut(s) 276, 439
BcoDI GTCTC 1 cut(s) 206
BfmI CTRYAG 2 cut(s) 238, 277
BisI GCNGC 1 cut(s) 351
BlsI GCNGC 1 cut(s) 352
Bme18I GGWCC 1 cut(s) 421
BmgT120I GGNCC 2 cut(s) 262, 421
BmiI GGNNCC 1 cut(s) 423
BmrI ACTGGG 1 cut(s) 404
BmuI ACTGGG 1 cut(s) 404
Bpu14I TTCGAA 1 cut(s) 295
BsaI GGTCTC 1 cut(s) 206
BsaWI WCCGGW 1 cut(s) 119
Bsc4I CCNNNNNNNGG 1 cut(s) 282
Bse1I ACTGG 1 cut(s) 410
BseGI GGATG 1 cut(s) 24
BseLI CCNNNNNNNGG 1 cut(s) 282
BseMII CTCAG 3 cut(s) 24, 125, 294
BseNI ACTGG 1 cut(s) 410
BseSI GKGCMC 1 cut(s) 59
BseXI GCAGC 1 cut(s) 362
BshFI GGCC 1 cut(s) 263
BsiSI CCGG 1 cut(s) 120
BslFI GGGAC 1 cut(s) 407
BslI CCNNNNNNNGG 1 cut(s) 282
BsmAI GTCTC 1 cut(s) 206
BsmFI GGGAC 1 cut(s) 407
BsnI GGCC 1 cut(s) 263
Bso31I GGTCTC 1 cut(s) 206
Bsp119I TTCGAA 1 cut(s) 295
Bsp1286I GDGCHC 2 cut(s) 59, 322
Bsp143I GATC 1 cut(s) 307
BspACI CCGC 1 cut(s) 173
BspANI GGCC 1 cut(s) 263
BspCNI CTCAG 3 cut(s) 25, 124, 295
BspLI GGNNCC 1 cut(s) 423
BspPI GGATC 1 cut(s) 315
BspQI GCTCTTC 1 cut(s) 351
BspT104I TTCGAA 1 cut(s) 295
BspTNI GGTCTC 1 cut(s) 206
BsrBI CCGCTC 1 cut(s) 173
BsrI ACTGG 1 cut(s) 410
BssMI GATC 1 cut(s) 307
Bst4CI ACNGT 2 cut(s) 242, 376
Bst6I CTCTTC 1 cut(s) 351
BstBI TTCGAA 1 cut(s) 295
BstC8I GCNNGC 2 cut(s) 341, 363
BstDEI CTNAG 3 cut(s) 33, 111, 303
BstF5I GGATG 1 cut(s) 24
BstKTI GATC 1 cut(s) 310
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 1 cut(s) 307
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstNSI RCATGY 1 cut(s) 209
BstSFI CTRYAG 2 cut(s) 238, 277
BstSLI GKGCMC 1 cut(s) 59
BstV1I GCAGC 1 cut(s) 362
BstXI CCANNNNNNTGG 1 cut(s) 158
BsuRI GGCC 1 cut(s) 263
BtsCI GGATG 1 cut(s) 24
BtsIMutI CAGTG 1 cut(s) 247
Cac8I GCNNGC 2 cut(s) 341, 363
Cfr13I GGNCC 2 cut(s) 262, 421
Csp6I GTAC 1 cut(s) 314
CviAII CATG 1 cut(s) 206
CviJI RGCY 9 cut(s) 12, 32, 155, 233, 263, 292, 320, 353, 399
CviKI_1 RGCY 9 cut(s) 12, 32, 155, 233, 263, 292, 320, 353, 399
CviQI GTAC 1 cut(s) 314
DdeI CTNAG 3 cut(s) 33, 111, 303
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
Eam1104I CTCTTC 1 cut(s) 351
EarI CTCTTC 1 cut(s) 351
Eco24I GRGCYC 1 cut(s) 322
Eco31I GGTCTC 1 cut(s) 206
Eco47I GGWCC 1 cut(s) 421
Eco57I CTGAAG 2 cut(s) 308, 375
EcoO109I RGGNCCY 1 cut(s) 421
EcoT38I GRGCYC 1 cut(s) 322
FaeI CATG 1 cut(s) 209
FaiI YATR 6 cut(s) 189, 207, 225, 250, 252, 348
FaqI GGGAC 1 cut(s) 407
FatI CATG 1 cut(s) 205
Fnu4HI GCNGC 1 cut(s) 351
FokI GGATG 1 cut(s) 31
FriOI GRGCYC 1 cut(s) 322
Fsp4HI GCNGC 1 cut(s) 351
GluI GCNGC 1 cut(s) 351
HaeIII GGCC 1 cut(s) 263
HapII CCGG 1 cut(s) 120
Hin1II CATG 1 cut(s) 209
HindIII AAGCTT 1 cut(s) 290
HpaII CCGG 1 cut(s) 120
Hpy188I TCNGA 1 cut(s) 170
Hpy188III TCNNGA 3 cut(s) 113, 268, 326
HpyAV CCTTC 1 cut(s) 332
HpyCH4III ACNGT 2 cut(s) 242, 376
HpyCH4V TGCA 5 cut(s) 79, 209, 350, 365, 371
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
HpyF3I CTNAG 3 cut(s) 33, 111, 303
Hsp92II CATG 1 cut(s) 209
Kzo9I GATC 1 cut(s) 307
LguI GCTCTTC 1 cut(s) 351
LmnI GCTCC 1 cut(s) 170
LpnPI CCDG 6 cut(s) 98, 133, 253, 311, 414, 423
Lsp1109I GCAGC 1 cut(s) 362
MalI GATC 1 cut(s) 309
MbiI CCGCTC 1 cut(s) 173
MboI GATC 1 cut(s) 307
MboII GAAGA 2 cut(s) 137, 368
MfeI CAATTG 1 cut(s) 74
MhlI GDGCHC 2 cut(s) 59, 322
MluCI AATT 2 cut(s) 74, 82
MnlI CCTC 5 cut(s) 21, 60, 275, 298, 435
MspA1I CMGCKG 1 cut(s) 353
MspI CCGG 1 cut(s) 120
MunI CAATTG 1 cut(s) 74
MwoI GCNNNNNNNGC 1 cut(s) 179
NdeII GATC 1 cut(s) 307
NlaIII CATG 1 cut(s) 209
NlaIV GGNNCC 1 cut(s) 423
NspI RCATGY 1 cut(s) 209
NspV TTCGAA 1 cut(s) 295
PciSI GCTCTTC 1 cut(s) 351
PkrI GCNGC 1 cut(s) 352
PpuMI RGGWCCY 1 cut(s) 421
Psp5II RGGWCCY 1 cut(s) 421
PspN4I GGNNCC 1 cut(s) 423
PspPI GGNCC 2 cut(s) 262, 421
PspPPI RGGWCCY 1 cut(s) 421
PvuII CAGCTG 1 cut(s) 353
RsaI GTAC 1 cut(s) 315
RsaNI GTAC 1 cut(s) 314
SapI GCTCTTC 1 cut(s) 351
SatI GCNGC 1 cut(s) 351
Sau3AI GATC 1 cut(s) 307
Sau96I GGNCC 2 cut(s) 262, 421
SduI GDGCHC 2 cut(s) 59, 322
SetI ASST 8 cut(s) 42, 71, 157, 218, 278, 294, 355, 423
SfcI CTRYAG 2 cut(s) 238, 277
SfuI TTCGAA 1 cut(s) 295
SinI GGWCC 1 cut(s) 421
Sse9I AATT 2 cut(s) 74, 82
SsiI CCGC 1 cut(s) 173
TaaI ACNGT 2 cut(s) 242, 376
TaqI TCGA 3 cut(s) 295, 310, 394
TasI AATT 2 cut(s) 74, 82
TscAI CASTG 1 cut(s) 247
TseI GCWGC 1 cut(s) 350
TspDTI ATGAA 3 cut(s) 17, 35, 154
TspGWI ACGGA 1 cut(s) 40
TspRI CASTG 1 cut(s) 247
VpaK11BI GGWCC 1 cut(s) 421
XceI RCATGY 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.