Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0014240

Physical Location & Seq

Genomic Coordinates Forward (+)

73149153 .. 73150676

Gene Structure 1524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG551600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGAACAGCAGCCGTTGGATGAATGAGAGGGCTGAGGTTAAACCCTTTTTAATACGACATCTTGGGTTCTTCTCCGTGTGCCCACCACAGAGGTTTCAATTGCAAAATTGTGTGAATGTTTTGAGAATGGCAACTCAGGAAACCGGAGAAGAAAATCAGCAAACTGCGAGTTCCCAAGCTGTTGGTTTCATCGGAGCGGTGGAAGCAAAGTTTAGGCAAATCAAAGAACATGCAGAGACCTACCCTTATGTGTGGGCTTCCTACAGTGTTGTATATGGTGGTTTGGCCCTCTGGACTACCTACAGATGGAGAAAGCTTCGAAAGACTGAGGATCGAGTACGAGCCCTTCAGGAGAGATTACGCAAGCATTATGCAGCTGAAGAGCGTGCAAGTGCAACCGTAAGCTCAAGCACAAGTCGAAGCCCTGCCACCCCAGTTCAAAAGCTTTATGAAAATTTTGCTATCAGTTTGAAGTTGAACACAGATTGCTTGGTACATCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

19.26

Weight (kDa)

9.63

Isoelectric Point (pI)

53.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09270 AT5G09270
fragaria_vesca	FvH4_6g45500
malus_domestica	MD09G1082400.v1.1 MD10G1003300.v1.1
prunus_persica	Prupe.3G241300_v2.0.a1
pyrus_communis	pycom09g00890 pycom10g00270
rosa_chinensis	RchiOBHm_Chr2g0163441
rosa_laevigata	RLG00000021393
rosa_multiflora	Rmu_sc0028601.1_g000002 Rmu_ssc0000231.1_g000002
rosa_roxburghii	Rroxscaffold_2G00087330
rosa_rugosa	Rorug02G0502700
rosa_samantha	Rh2AG569700 Rh2CG551600
rosa_wichuraiana	Rw2G047150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	197
AciI	CCGC	1 cut(s)	197
AclWI	GGATC	1 cut(s)	339
AcsI	RAATTY	1 cut(s)	454
AcuI	CTGAAG	2 cut(s)	332, 399
AfaI	GTAC	2 cut(s)	339, 495
AfiI	CCNNNNNNNGG	1 cut(s)	306
AgsI	TTSAA	4 cut(s)	98, 440, 472, 478
AluBI	AGCT	5 cut(s)	179, 316, 377, 405, 445
AluI	AGCT	5 cut(s)	179, 316, 377, 405, 445
Alw26I	GTCTC	1 cut(s)	230
AlwI	GGATC	1 cut(s)	339
AoxI	GGCC	1 cut(s)	285
ApeKI	GCWGC	2 cut(s)	9, 374
ApoI	RAATTY	1 cut(s)	454
AspS9I	GGNCC	1 cut(s)	286
AsuII	TTCGAA	1 cut(s)	319
BaeGI	GKGCMC	1 cut(s)	83
BaeI	ACNNNNGTAYC	1 cut(s)	485
BanII	GRGCYC	1 cut(s)	346
BarI	GAAGNNNNNNTAC	2 cut(s)	330, 362
BbvCI	CCTCAGC	1 cut(s)	33
BbvI	GCAGC	2 cut(s)	21, 386
BccI	CCATC	1 cut(s)	300
BcoDI	GTCTC	1 cut(s)	230
BfmI	CTRYAG	3 cut(s)	262, 301, 500
BisI	GCNGC	2 cut(s)	10, 375
BlsI	GCNGC	2 cut(s)	11, 376
BmgT120I	GGNCC	1 cut(s)	286
BmrI	ACTGGG	1 cut(s)	428
BmuI	ACTGGG	1 cut(s)	428
Bpu10I	CCTNAGC	1 cut(s)	33
Bpu14I	TTCGAA	1 cut(s)	319
BpuEI	CTTGAG	1 cut(s)	391
BsaI	GGTCTC	1 cut(s)	230
BsaWI	WCCGGW	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	1 cut(s)	306
Bse1I	ACTGG	1 cut(s)	434
BseGI	GGATG	1 cut(s)	24
BseLI	CCNNNNNNNGG	1 cut(s)	306
BseMII	CTCAG	3 cut(s)	24, 149, 318
BseNI	ACTGG	1 cut(s)	434
BseSI	GKGCMC	1 cut(s)	83
BseXI	GCAGC	2 cut(s)	21, 386
BshFI	GGCC	1 cut(s)	287
BsiSI	CCGG	1 cut(s)	144
BslI	CCNNNNNNNGG	1 cut(s)	306
BsmAI	GTCTC	1 cut(s)	230
BsnI	GGCC	1 cut(s)	287
Bso31I	GGTCTC	1 cut(s)	230
Bsp119I	TTCGAA	1 cut(s)	319
Bsp1286I	GDGCHC	2 cut(s)	83, 346
Bsp143I	GATC	1 cut(s)	331
BspACI	CCGC	1 cut(s)	197
BspANI	GGCC	1 cut(s)	287
BspCNI	CTCAG	3 cut(s)	25, 148, 319
BspPI	GGATC	1 cut(s)	339
BspQI	GCTCTTC	1 cut(s)	375
BspT104I	TTCGAA	1 cut(s)	319
BspTNI	GGTCTC	1 cut(s)	230
BsrBI	CCGCTC	1 cut(s)	197
BsrI	ACTGG	1 cut(s)	434
BssMI	GATC	1 cut(s)	331
Bst4CI	ACNGT	2 cut(s)	266, 400
Bst6I	CTCTTC	1 cut(s)	375
BstBI	TTCGAA	1 cut(s)	319
BstC8I	GCNNGC	2 cut(s)	365, 387
BstDEI	CTNAG	3 cut(s)	33, 135, 327
BstF5I	GGATG	1 cut(s)	24
BstKTI	GATC	1 cut(s)	334
BstMAI	GTCTC	1 cut(s)	230
BstMBI	GATC	1 cut(s)	331
BstMWI	GCNNNNNNNGC	1 cut(s)	203
BstNSI	RCATGY	1 cut(s)	233
BstSFI	CTRYAG	3 cut(s)	262, 301, 500
BstSLI	GKGCMC	1 cut(s)	83
BstV1I	GCAGC	2 cut(s)	21, 386
BstXI	CCANNNNNNTGG	1 cut(s)	182
BsuRI	GGCC	1 cut(s)	287
BtsCI	GGATG	1 cut(s)	24
BtsIMutI	CAGTG	1 cut(s)	271
Cac8I	GCNNGC	2 cut(s)	365, 387
Cfr13I	GGNCC	1 cut(s)	286
Csp6I	GTAC	2 cut(s)	338, 494
CviAII	CATG	1 cut(s)	230
CviQI	GTAC	2 cut(s)	338, 494
DdeI	CTNAG	3 cut(s)	33, 135, 327
DpnI	GATC	1 cut(s)	333
DpnII	GATC	1 cut(s)	331
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
Eco24I	GRGCYC	1 cut(s)	346
Eco31I	GGTCTC	1 cut(s)	230
Eco57I	CTGAAG	2 cut(s)	332, 399
EcoT38I	GRGCYC	1 cut(s)	346
FaeI	CATG	1 cut(s)	233
FaiI	YATR	6 cut(s)	231, 249, 274, 276, 372, 450
FatI	CATG	1 cut(s)	229
Fnu4HI	GCNGC	2 cut(s)	10, 375
FokI	GGATG	1 cut(s)	31
FriOI	GRGCYC	1 cut(s)	346
Fsp4HI	GCNGC	2 cut(s)	10, 375
GluI	GCNGC	2 cut(s)	10, 375
HaeIII	GGCC	1 cut(s)	287
HapII	CCGG	1 cut(s)	144
Hin1II	CATG	1 cut(s)	233
HindIII	AAGCTT	2 cut(s)	314, 443
HpaII	CCGG	1 cut(s)	144
Hpy188I	TCNGA	1 cut(s)	194
Hpy188III	TCNNGA	3 cut(s)	137, 292, 350
HpyAV	CCTTC	1 cut(s)	356
HpyCH4III	ACNGT	2 cut(s)	266, 400
HpyCH4V	TGCA	5 cut(s)	103, 233, 374, 389, 395
HpyF10VI	GCNNNNNNNGC	1 cut(s)	203
HpyF3I	CTNAG	3 cut(s)	33, 135, 327
Hsp92II	CATG	1 cut(s)	233
Kzo9I	GATC	1 cut(s)	331
LguI	GCTCTTC	1 cut(s)	375
LmnI	GCTCC	1 cut(s)	194
LpnPI	CCDG	6 cut(s)	122, 157, 277, 335, 438, 447
Lsp1109I	GCAGC	2 cut(s)	21, 386
MalI	GATC	1 cut(s)	333
MbiI	CCGCTC	1 cut(s)	197
MboI	GATC	1 cut(s)	331
MboII	GAAGA	3 cut(s)	61, 161, 392
MfeI	CAATTG	1 cut(s)	98
MhlI	GDGCHC	2 cut(s)	83, 346
MluCI	AATT	3 cut(s)	98, 106, 454
MnlI	CCTC	5 cut(s)	21, 28, 84, 299, 322
MseI	TTAA	2 cut(s)	39, 50
MspA1I	CMGCKG	1 cut(s)	377
MspI	CCGG	1 cut(s)	144
MunI	CAATTG	1 cut(s)	98
MwoI	GCNNNNNNNGC	1 cut(s)	203
NdeII	GATC	1 cut(s)	331
NlaIII	CATG	1 cut(s)	233
NspI	RCATGY	1 cut(s)	233
NspV	TTCGAA	1 cut(s)	319
PciSI	GCTCTTC	1 cut(s)	375
PkrI	GCNGC	2 cut(s)	11, 376
PspPI	GGNCC	1 cut(s)	286
PvuII	CAGCTG	1 cut(s)	377
RsaI	GTAC	2 cut(s)	339, 495
RsaNI	GTAC	2 cut(s)	338, 494
SapI	GCTCTTC	1 cut(s)	375
SaqAI	TTAA	2 cut(s)	39, 50
SatI	GCNGC	2 cut(s)	10, 375
Sau3AI	GATC	1 cut(s)	331
Sau96I	GGNCC	1 cut(s)	286
SduI	GDGCHC	2 cut(s)	83, 346
SetI	ASST	9 cut(s)	39, 95, 181, 242, 302, 318, 379, 407, 447
SfcI	CTRYAG	3 cut(s)	262, 301, 500
SfuI	TTCGAA	1 cut(s)	319
SmlI	CTYRAG	1 cut(s)	406
SmoI	CTYRAG	1 cut(s)	406
Sse9I	AATT	3 cut(s)	98, 106, 454
SsiI	CCGC	1 cut(s)	197
TaaI	ACNGT	2 cut(s)	266, 400
TaqI	TCGA	3 cut(s)	319, 334, 418
TasI	AATT	3 cut(s)	98, 106, 454
Tru1I	TTAA	2 cut(s)	39, 50
Tru9I	TTAA	2 cut(s)	39, 50
TscAI	CASTG	1 cut(s)	271
TseI	GCWGC	2 cut(s)	9, 374
TspDTI	ATGAA	4 cut(s)	17, 35, 178, 465
TspGWI	ACGGA	1 cut(s)	64
TspRI	CASTG	1 cut(s)	271
XapI	RAATTY	1 cut(s)	454
XceI	RCATGY	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.