Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028601.1

Orthogroup ID

OG0014240

Physical Location & Seq

Genomic Coordinates Forward (+)

984 .. 2330

Gene Structure 1347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028601.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

atgtcgtttctcatttttcgggtgttaaacccttcgtttgctcttcttctgatctttgcaatctctgtaaggttcttctccgtgtgcccaccacagaggtttcaattgcaaaattgtgtgaatgttttgagaatggcaactcaggaaaccggagaagaaaatcagcaaactgcgagttcccaagctgttggtttcatcggaggggtggaagcaaagtataggcaaatcaaagaacatgcagagacctacccttatgtgtgggcttcctacagtgttgtatatggtggtttggccctctggactacctacagatggagaaagcttcgaaagactgaggatcgagtacgagcccttcaggagagattacgcaagcattatgcagctgaagagcgtgcaagtgcaaccgtaagctcaagcacaagtcgaagccctgccaccccagttcaaaaggtccctccaccatctgctgacaaaacccctaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

161

Amino Acids

18.29

Weight (kDa)

9.95

Isoelectric Point (pI)

55.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09270 AT5G09270
fragaria_vesca	FvH4_6g45500
malus_domestica	MD09G1082400.v1.1 MD10G1003300.v1.1
prunus_persica	Prupe.3G241300_v2.0.a1
pyrus_communis	pycom09g00890 pycom10g00270
rosa_chinensis	RchiOBHm_Chr2g0163441
rosa_laevigata	RLG00000021393
rosa_multiflora	Rmu_sc0028601.1_g000002 Rmu_ssc0000231.1_g000002
rosa_roxburghii	Rroxscaffold_2G00087330
rosa_rugosa	Rorug02G0502700
rosa_samantha	Rh2AG569700 Rh2CG551600
rosa_wichuraiana	Rw2G047150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	345
AcuI	CTGAAG	2 cut(s)	338, 405
AfaI	GTAC	1 cut(s)	345
AfiI	CCNNNNNNNGG	1 cut(s)	312
AgsI	TTSAA	2 cut(s)	104, 446
AluBI	AGCT	4 cut(s)	185, 322, 383, 411
AluI	AGCT	4 cut(s)	185, 322, 383, 411
Alw26I	GTCTC	1 cut(s)	236
AlwI	GGATC	1 cut(s)	345
AoxI	GGCC	1 cut(s)	291
ApeKI	GCWGC	1 cut(s)	380
AspS9I	GGNCC	2 cut(s)	292, 451
AsuII	TTCGAA	1 cut(s)	325
AvaII	GGWCC	1 cut(s)	451
BaeGI	GKGCMC	1 cut(s)	89
BanII	GRGCYC	1 cut(s)	352
BarI	GAAGNNNNNNTAC	2 cut(s)	336, 368
BbvI	GCAGC	1 cut(s)	392
BccI	CCATC	2 cut(s)	306, 469
BcoDI	GTCTC	1 cut(s)	236
BfmI	CTRYAG	2 cut(s)	268, 307
BisI	GCNGC	1 cut(s)	381
BlsI	GCNGC	1 cut(s)	382
Bme18I	GGWCC	1 cut(s)	451
BmgT120I	GGNCC	2 cut(s)	292, 451
BmiI	GGNNCC	1 cut(s)	453
BmrI	ACTGGG	1 cut(s)	434
BmuI	ACTGGG	1 cut(s)	434
Bpu14I	TTCGAA	1 cut(s)	325
BpuEI	CTTGAG	1 cut(s)	397
BsaI	GGTCTC	1 cut(s)	236
BsaWI	WCCGGW	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	1 cut(s)	312
Bse1I	ACTGG	1 cut(s)	440
BseLI	CCNNNNNNNGG	1 cut(s)	312
BseMII	CTCAG	2 cut(s)	155, 324
BseNI	ACTGG	1 cut(s)	440
BseSI	GKGCMC	1 cut(s)	89
BseXI	GCAGC	1 cut(s)	392
BshFI	GGCC	1 cut(s)	293
BsiSI	CCGG	1 cut(s)	150
BslFI	GGGAC	1 cut(s)	437
BslI	CCNNNNNNNGG	1 cut(s)	312
BsmAI	GTCTC	1 cut(s)	236
BsmFI	GGGAC	1 cut(s)	437
BsnI	GGCC	1 cut(s)	293
Bso31I	GGTCTC	1 cut(s)	236
Bsp119I	TTCGAA	1 cut(s)	325
Bsp1286I	GDGCHC	2 cut(s)	89, 352
Bsp143I	GATC	2 cut(s)	51, 337
BspANI	GGCC	1 cut(s)	293
BspCNI	CTCAG	2 cut(s)	154, 325
BspLI	GGNNCC	1 cut(s)	453
BspPI	GGATC	1 cut(s)	345
BspQI	GCTCTTC	2 cut(s)	48, 381
BspT104I	TTCGAA	1 cut(s)	325
BspTNI	GGTCTC	1 cut(s)	236
BsrI	ACTGG	1 cut(s)	440
BssMI	GATC	2 cut(s)	51, 337
Bst4CI	ACNGT	2 cut(s)	272, 406
Bst6I	CTCTTC	2 cut(s)	48, 381
BstBI	TTCGAA	1 cut(s)	325
BstC8I	GCNNGC	2 cut(s)	371, 393
BstDEI	CTNAG	2 cut(s)	141, 333
BstKTI	GATC	2 cut(s)	54, 340
BstMAI	GTCTC	1 cut(s)	236
BstMBI	GATC	2 cut(s)	51, 337
BstNSI	RCATGY	1 cut(s)	239
BstSFI	CTRYAG	2 cut(s)	268, 307
BstSLI	GKGCMC	1 cut(s)	89
BstV1I	GCAGC	1 cut(s)	392
BstXI	CCANNNNNNTGG	1 cut(s)	188
BsuRI	GGCC	1 cut(s)	293
BtsIMutI	CAGTG	1 cut(s)	277
Cac8I	GCNNGC	2 cut(s)	371, 393
Cfr13I	GGNCC	2 cut(s)	292, 451
Csp6I	GTAC	1 cut(s)	344
CviAII	CATG	1 cut(s)	236
CviJI	RGCY	8 cut(s)	185, 263, 293, 322, 350, 383, 411, 429
CviKI_1	RGCY	8 cut(s)	185, 263, 293, 322, 350, 383, 411, 429
CviQI	GTAC	1 cut(s)	344
DdeI	CTNAG	2 cut(s)	141, 333
DpnI	GATC	2 cut(s)	53, 339
DpnII	GATC	2 cut(s)	51, 337
Eam1104I	CTCTTC	2 cut(s)	48, 381
EarI	CTCTTC	2 cut(s)	48, 381
Eco24I	GRGCYC	1 cut(s)	352
Eco31I	GGTCTC	1 cut(s)	236
Eco47I	GGWCC	1 cut(s)	451
Eco57I	CTGAAG	2 cut(s)	338, 405
EcoO109I	RGGNCCY	1 cut(s)	451
EcoT38I	GRGCYC	1 cut(s)	352
FaeI	CATG	1 cut(s)	239
FaiI	YATR	6 cut(s)	219, 237, 255, 280, 282, 378
FaqI	GGGAC	1 cut(s)	437
FatI	CATG	1 cut(s)	235
Fnu4HI	GCNGC	1 cut(s)	381
FriOI	GRGCYC	1 cut(s)	352
Fsp4HI	GCNGC	1 cut(s)	381
GluI	GCNGC	1 cut(s)	381
HaeIII	GGCC	1 cut(s)	293
HapII	CCGG	1 cut(s)	150
Hin1II	CATG	1 cut(s)	239
HindIII	AAGCTT	1 cut(s)	320
HpaII	CCGG	1 cut(s)	150
Hpy188I	TCNGA	2 cut(s)	51, 200
Hpy188III	TCNNGA	3 cut(s)	143, 298, 356
HpyAV	CCTTC	2 cut(s)	42, 362
HpyCH4III	ACNGT	2 cut(s)	272, 406
HpyCH4V	TGCA	6 cut(s)	59, 109, 239, 380, 395, 401
HpyF3I	CTNAG	2 cut(s)	141, 333
Hsp92II	CATG	1 cut(s)	239
Kzo9I	GATC	2 cut(s)	51, 337
LguI	GCTCTTC	2 cut(s)	48, 381
LpnPI	CCDG	6 cut(s)	128, 163, 283, 341, 444, 453
Lsp1109I	GCAGC	1 cut(s)	392
MalI	GATC	2 cut(s)	53, 339
MboI	GATC	2 cut(s)	51, 337
MboII	GAAGA	5 cut(s)	35, 38, 67, 167, 398
MfeI	CAATTG	1 cut(s)	104
MhlI	GDGCHC	2 cut(s)	89, 352
MluCI	AATT	2 cut(s)	104, 112
MnlI	CCTC	5 cut(s)	90, 194, 305, 328, 465
MseI	TTAA	1 cut(s)	26
MspA1I	CMGCKG	1 cut(s)	383
MspI	CCGG	1 cut(s)	150
MunI	CAATTG	1 cut(s)	104
NdeII	GATC	2 cut(s)	51, 337
NlaIII	CATG	1 cut(s)	239
NlaIV	GGNNCC	1 cut(s)	453
NspI	RCATGY	1 cut(s)	239
NspV	TTCGAA	1 cut(s)	325
PciSI	GCTCTTC	2 cut(s)	48, 381
PkrI	GCNGC	1 cut(s)	382
PpuMI	RGGWCCY	1 cut(s)	451
Psp5II	RGGWCCY	1 cut(s)	451
PspN4I	GGNNCC	1 cut(s)	453
PspPI	GGNCC	2 cut(s)	292, 451
PspPPI	RGGWCCY	1 cut(s)	451
PvuII	CAGCTG	1 cut(s)	383
RsaI	GTAC	1 cut(s)	345
RsaNI	GTAC	1 cut(s)	344
SapI	GCTCTTC	2 cut(s)	48, 381
SaqAI	TTAA	1 cut(s)	26
SatI	GCNGC	1 cut(s)	381
Sau3AI	GATC	2 cut(s)	51, 337
Sau96I	GGNCC	2 cut(s)	292, 451
SduI	GDGCHC	2 cut(s)	89, 352
SetI	ASST	9 cut(s)	74, 101, 187, 248, 308, 324, 385, 413, 453
SfcI	CTRYAG	2 cut(s)	268, 307
SfuI	TTCGAA	1 cut(s)	325
SinI	GGWCC	1 cut(s)	451
SmlI	CTYRAG	1 cut(s)	412
SmoI	CTYRAG	1 cut(s)	412
Sse9I	AATT	2 cut(s)	104, 112
TaaI	ACNGT	2 cut(s)	272, 406
TaqI	TCGA	3 cut(s)	325, 340, 424
TasI	AATT	2 cut(s)	104, 112
Tru1I	TTAA	1 cut(s)	26
Tru9I	TTAA	1 cut(s)	26
TscAI	CASTG	1 cut(s)	277
TseI	GCWGC	1 cut(s)	380
TspDTI	ATGAA	1 cut(s)	184
TspGWI	ACGGA	1 cut(s)	70
TspRI	CASTG	1 cut(s)	277
VpaK11BI	GGWCC	1 cut(s)	451
XceI	RCATGY	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.