AT5G09876

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
3079887 .. 3080435
549 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G09876.1

Sequence Viewer

Length: 318 bp
ATGGAGAAGATCCAATCAACGAAGAACGAGAGTAATAAACGGAGGAGACGAGAAGAGATGATAACGGAGATAGAGATGGAGGCTGCTCAACAGTTGATGCATCTAAGCGATGAAGAGAAAAATATGGATATCATCAAGAAGAAGAAGACAATCGAAGAAATATTCGGTAAAGATGATAGTCATGATCAAGATCAATGCACGGAAGAAATGGTGATGTTGAGAGTAATATCATCATTGAAGAAGGAGAAGAAGAAGAAGTATAGGACCATTGAGAGCATTTACATGGCAACGAGACCTATCAGGGTCGTGATTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

12.65

Weight (kDa)

8.99

Isoelectric Point (pI)

91.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0017936)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09876
fragaria_vesca FvH4_1g23900
prunus_persica Prupe.6G161200_v2.0.a1
pyrus_communis pycom01g03560
rosa_laevigata RLG00000018498
rosa_roxburghii Rroxscaffold_2G00124000
rosa_rugosa Rorug02G0224600
rosa_samantha Rh2AG282200 Rh2BG293500 Rh2DG288400 Rh2DG307500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 4
AgsI TTSAA 1 cut(s) 238
Alw26I GTCTC 2 cut(s) 40, 286
AlwI GGATC 1 cut(s) 4
ApeKI GCWGC 1 cut(s) 83
AspS9I GGNCC 1 cut(s) 264
AsuHPI GGTGA 1 cut(s) 223
AvaII GGWCC 1 cut(s) 264
BbsI GAAGAC 1 cut(s) 152
BbvI GCAGC 1 cut(s) 70
BccI CCATC 1 cut(s) 70
BclI TGATCA 1 cut(s) 184
BcoDI GTCTC 2 cut(s) 40, 286
BisI GCNGC 1 cut(s) 84
BlsI GCNGC 1 cut(s) 85
Bme18I GGWCC 1 cut(s) 264
BmgT120I GGNCC 1 cut(s) 264
BmsI GCATC 2 cut(s) 87, 109
BpiI GAAGAC 1 cut(s) 152
BsaBI GATNNNNATC 1 cut(s) 189
BsaI GGTCTC 1 cut(s) 286
Bse8I GATNNNNATC 1 cut(s) 189
BseJI GATNNNNATC 1 cut(s) 189
BseRI GAGGAG 1 cut(s) 58
BseXI GCAGC 1 cut(s) 70
BsmAI GTCTC 2 cut(s) 40, 286
BsmBI CGTCTC 1 cut(s) 40
Bso31I GGTCTC 1 cut(s) 286
Bsp143I GATC 3 cut(s) 9, 184, 190
BspHI TCATGA 1 cut(s) 181
BspPI GGATC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 286
BssMI GATC 3 cut(s) 9, 184, 190
Bst4CI ACNGT 1 cut(s) 93
Bst6I CTCTTC 2 cut(s) 48, 108
BstDEI CTNAG 1 cut(s) 104
BstKTI GATC 3 cut(s) 12, 187, 193
BstMAI GTCTC 2 cut(s) 40, 286
BstMBI GATC 3 cut(s) 9, 184, 190
BstV1I GCAGC 1 cut(s) 70
BstV2I GAAGAC 1 cut(s) 152
BstX2I RGATCY 1 cut(s) 9
BstYI RGATCY 1 cut(s) 9
BtgZI GCGATG 1 cut(s) 123
CciI TCATGA 1 cut(s) 181
Cfr13I GGNCC 1 cut(s) 264
CviAII CATG 2 cut(s) 182, 283
CviJI RGCY 1 cut(s) 83
CviKI_1 RGCY 1 cut(s) 83
DdeI CTNAG 1 cut(s) 104
DpnI GATC 3 cut(s) 11, 186, 192
DpnII GATC 3 cut(s) 9, 184, 190
Eam1104I CTCTTC 2 cut(s) 48, 108
EarI CTCTTC 2 cut(s) 48, 108
Eco31I GGTCTC 1 cut(s) 286
Eco32I GATATC 1 cut(s) 130
Eco47I GGWCC 1 cut(s) 264
EcoRV GATATC 1 cut(s) 130
EcoT22I ATGCAT 1 cut(s) 102
Esp3I CGTCTC 1 cut(s) 40
FaeI CATG 2 cut(s) 185, 286
FaiI YATR 4 cut(s) 125, 183, 261, 284
FatI CATG 2 cut(s) 181, 282
FbaI TGATCA 1 cut(s) 184
Fnu4HI GCNGC 1 cut(s) 84
Fsp4HI GCNGC 1 cut(s) 84
GluI GCNGC 1 cut(s) 84
Hin1II CATG 2 cut(s) 185, 286
HphI GGTGA 1 cut(s) 223
Hpy188III TCNNGA 4 cut(s) 136, 182, 188, 307
HpyAV CCTTC 1 cut(s) 235
HpyCH4III ACNGT 1 cut(s) 93
HpyCH4V TGCA 2 cut(s) 100, 198
HpyF3I CTNAG 1 cut(s) 104
Hsp92II CATG 2 cut(s) 185, 286
Ksp22I TGATCA 1 cut(s) 184
Kzo9I GATC 3 cut(s) 9, 184, 190
LpnPI CCDG 1 cut(s) 286
Lsp1109I GCAGC 1 cut(s) 70
LweI GCATC 2 cut(s) 87, 109
MalI GATC 3 cut(s) 11, 186, 192
MboI GATC 3 cut(s) 9, 184, 190
MflI RGATCY 1 cut(s) 9
MnlI CCTC 2 cut(s) 36, 73
Mph1103I ATGCAT 1 cut(s) 102
MslI CAYNNNNRTG 1 cut(s) 281
NdeII GATC 3 cut(s) 9, 184, 190
NlaIII CATG 2 cut(s) 185, 286
NsiI ATGCAT 1 cut(s) 102
PagI TCATGA 1 cut(s) 181
PcsI WCGNNNNNNNCGW 1 cut(s) 46
PkrI GCNGC 1 cut(s) 85
PspPI GGNCC 1 cut(s) 264
PsuI RGATCY 1 cut(s) 9
RseI CAYNNNNRTG 1 cut(s) 281
SatI GCNGC 1 cut(s) 84
Sau3AI GATC 3 cut(s) 9, 184, 190
Sau96I GGNCC 1 cut(s) 264
SetI ASST 1 cut(s) 298
SfaNI GCATC 2 cut(s) 87, 109
SgeI CNNG 9 cut(s) 40, 62, 148, 194, 200, 211, 295, 303, 313
SinI GGWCC 1 cut(s) 264
SmiMI CAYNNNNRTG 1 cut(s) 281
SspI AATATT 1 cut(s) 162
TaaI ACNGT 1 cut(s) 93
TaqI TCGA 1 cut(s) 153
TseI GCWGC 1 cut(s) 83
TspDTI ATGAA 1 cut(s) 126
TspGWI ACGGA 3 cut(s) 55, 80, 215
VpaK11BI GGWCC 1 cut(s) 264
Zsp2I ATGCAT 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.